Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02817 Brassica carinata HOM05D004796 ORTHO05D016811 1.9e-19 98.2 51 100.0
C03p59950 Brassica napus HOM05D004796 ORTHO05D016811 7.6e-16 86.3 48 91.7
BcaB04g20026 Brassica carinata HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
BcaC04g23250 Brassica carinata HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
A09p09140 Brassica napus HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
C09p10650 Brassica napus HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
BolC9t53963H Brassica oleracea HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
BraA09t36565Z Brassica rapa HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
AUR62007967 Chenopodium quinoa HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 83.6
ECA234G3987 Erigeron canadensis HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
ECA240G3001 Erigeron canadensis HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
Thhalv10004176m.g Eutrema salsugineum HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
HanXRQChr14g0447651 Helianthus annuus HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
Lsat_1_v5_gn_2_81541 Lactuca sativa HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
Sp2g28820 Schrenkiella parvula HOM05D004796 ORTHO05D006527 9.9e-16 85.9 55 85.5
Aa31LG1G16340 Aethionema arabicum HOM05D004796 ORTHO05D006527 1.3e-15 85.5 55 83.6
BolC3t18259H Brassica oleracea HOM05D004796 ORTHO05D016811 1.3e-15 85.5 44 100.0
COL.COLO4_11645 Corchorus olitorius HOM05D004796 ORTHO05D006527 1.3e-15 85.5 55 83.6
Ah.03g139580 Amaranthus hybridus HOM05D004796 ORTHO05D006527 1.7e-15 85.1 55 83.6
EL10Ac6g14948 Beta vulgaris HOM05D004796 ORTHO05D006527 1.7e-15 85.1 55 83.6
CARHR279720 Cardamine hirsuta HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
DCAR_010778 Daucus carota HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
Duzib147G0087 Durio zibethinus HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
Duzib187G1710 Durio zibethinus HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
FvH4_1g18610 Fragaria vesca HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
FAN23G2833 Fragaria x ananassa HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
FAN26G2906 Fragaria x ananassa HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
FAN28G1552 Fragaria x ananassa HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
Gohir.A05G255700 Gossypium hirsutum HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
Gohir.A12G081500 Gossypium hirsutum HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
Gohir.D05G257400 Gossypium hirsutum HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
Gohir.D12G078300 Gossypium hirsutum HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
Gorai.008G087200 Gossypium raimondii HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
Gorai.009G268800 Gossypium raimondii HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
Lj2C425T5 Lonicera japonica HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
MD15G1303800 Malus domestica HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
RcHm_v2.0_Chr2g0109391 Rosa chinensis HOM05D004796 ORTHO05D006527 2.2e-15 84.7 55 83.6
AL8G43440 Arabidopsis lyrata HOM05D004796 ORTHO05D006527 2.9e-15 84.3 55 83.6
AT5G65720 Arabidopsis thaliana HOM05D004796 ORTHO05D006527 2.9e-15 84.3 55 83.6
Carub.0008s2662 Capsella rubella HOM05D004796 ORTHO05D006527 2.9e-15 84.3 55 83.6
Hma1.2p1_0424F.1_g150270 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 2.9e-15 84.3 55 81.8
ATR1120G045 Amborella trichopoda HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
MSTRG.23646 Avicennia marina HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
Cc07_g07590 Coffea canephora HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
Haze_03962 Corylus avellana HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 83.6
Potri.007G000600 Populus trichocarpa HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
Sabra07G0000600 Salix brachista HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
Sabra08G0002600 Salix brachista HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
SalBow3G1292 Salvia bowleyana HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
SalBow3G2368 Salvia bowleyana HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
SalBow3G3135 Salvia bowleyana HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
Sc07g0000270 Simmondsia chinensis HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
SGA_v2.0_scaffold121G33084 Striga asiatica HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
SGA_v2.0_scaffold269G46256 Striga asiatica HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
Thecc.01G079500 Theobroma cacao HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
TWI63G0151 Tripterygium wilfordii HOM05D004796 ORTHO05D006527 4.9e-15 83.6 55 81.8
arahy.Tifrunner.gnm1.ann1.P6WLKW Arachis hypogaea HOM05D004796 ORTHO05D006527 6.4e-15 83.2 55 81.8
arahy.Tifrunner.gnm1.ann1.R82CC3 Arachis hypogaea HOM05D004796 ORTHO05D006527 6.4e-15 83.2 55 81.8
Cpa.g.sc129.49 Carica papaya HOM05D004796 ORTHO05D006527 6.4e-15 83.2 55 81.8
FvH4_4g11530 Fragaria vesca HOM05D004796 ORTHO05D016811 6.4e-15 83.2 55 81.8
FAN04G2432 Fragaria x ananassa HOM05D004796 ORTHO05D016811 6.4e-15 83.2 55 81.8
Medtr5g014820 Medicago truncatula HOM05D004796 ORTHO05D006527 6.4e-15 83.2 55 81.8
TPR.G28859 Trifolium pratense HOM05D004796 ORTHO05D006527 6.4e-15 83.2 55 81.8
FAN11G3064 Fragaria x ananassa HOM05D004796 ORTHO05D016811 8.4e-15 82.8 55 81.8
Os09g0338400 Oryza sativa ssp. japonica HOM05D004796 ORTHO05D006527 8.4e-15 82.8 55 80.0
Actinidia36405 Actinidia chinensis HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
CSS0039666 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
CSS0047287 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
Cfa006794 Carpinus fangiana HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
HanXRQChr14g0461401 Helianthus annuus HOM05D004796 ORTHO05D006527 1.1e-14 82.4 54 79.6
Hma1.2p1_0477F.1_g160960 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
Hma1.2p1_1953F.1_g308840 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
MCO07G690 Micromonas commoda HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 76.4
Nn4g24745 Nelumbo nucifera HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
Nn5g30704 Nelumbo nucifera HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
Pp3c1_20380 Physcomitrium patens HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 80.0
Prupe.6G213300 Prunus persica HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
QL06p038221 Quercus lobata HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
THA.LOC104798404 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
THA.LOC104800063 Tarenaya hassleriana HOM05D004796 ORTHO05D016811 1.1e-14 82.4 55 81.8
HPP92_019516 Vanilla planifolia HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
GSVIVG01003606001 Vitis vinifera HOM05D004796 ORTHO05D006527 1.1e-14 82.4 55 81.8
Ciclev10025572m.g Citrus clementina HOM05D004796 ORTHO05D006527 1.4e-14 82.0 55 80.0
Dinv23067 Davidia involucrata HOM05D004796 ORTHO05D006527 1.4e-14 82.0 55 80.0
Eucgr.I00651 Eucalyptus grandis HOM05D004796 ORTHO05D006527 1.4e-14 82.0 55 80.0
Oeu014312.1 Olea europaea HOM05D004796 ORTHO05D006527 1.4e-14 82.0 55 80.0
PSO063G7095 Papaver somniferum HOM05D004796 ORTHO05D006527 1.4e-14 82.0 55 80.0
PSO782G2535 Papaver somniferum HOM05D004796 ORTHO05D006527 1.4e-14 82.0 55 80.0
Psat2g172800 Pisum sativum HOM05D004796 ORTHO05D006527 1.4e-14 82.0 55 80.0
PGR004G2229 Punica granatum HOM05D004796 ORTHO05D006527 1.4e-14 82.0 55 80.0
SMO172G0132 Selaginella moellendorffii HOM05D004796 ORTHO05D006527 1.4e-14 82.0 55 81.8
Atru.chr3.1085 Acer truncatum HOM05D004796 ORTHO05D006527 1.9e-14 81.6 55 78.2
Aa31LG11G11240 Aethionema arabicum HOM05D004796 ORTHO05D006527 2.4e-14 81.3 54 79.6
CANSAT01G0390 Cannabis sativa HOM05D004796 ORTHO05D006527 2.4e-14 81.3 55 81.8
CBR_g17075 Chara braunii HOM05D004796 ORTHO05D006527 2.4e-14 81.3 55 80.0
CBR_g17082 Chara braunii HOM05D004796 ORTHO05D006527 2.4e-14 81.3 55 80.0
ClCG01G017940 Citrullus lanatus HOM05D004796 ORTHO05D006527 2.4e-14 81.3 55 80.0
MELO3C007668.2 Cucumis melo HOM05D004796 ORTHO05D006527 2.4e-14 81.3 55 80.0
CsaV3_6G044470 Cucumis sativus L. HOM05D004796 ORTHO05D006527 2.4e-14 81.3 55 80.0
Pp3c2_20850 Physcomitrium patens HOM05D004796 ORTHO05D006527 2.4e-14 81.3 55 78.2
Sed0020912 Sechium edule HOM05D004796 ORTHO05D006527 2.4e-14 81.3 55 80.0
GSVIVG01008311001 Vitis vinifera HOM05D004796 ORTHO05D006527 2.4e-14 81.3 55 80.0
Aqoxy5G00233 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
CAN.G1061.4 Capsicum annuum HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 78.2
CiPaw.07G039300 Carya illinoinensis HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
Ca_24663_v3 Cicer arietinum L. HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
Glyma.01G197100 Glycine max HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
Glyma.11G044600 Glycine max HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
Lj2g0010705 Lotus japonicus HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
Lalb_Chr09g0323791 Lupinus albus HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
Lalb_Chr16g0379061 Lupinus albus HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
MBI11_g39360_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
Nitab4.5_0000396g0100 Nicotiana tabacum HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 78.2
Nitab4.5_0006325g0030 Nicotiana tabacum HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 78.2
PSO170G1369 Papaver somniferum HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
PSO210G2597 Papaver somniferum HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
Peaxi162Scf00096g01526 Petunia axillaris HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 78.2
Phvul.002G008200 Phaseolus vulgaris HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
PGSC0003DMG400030629 Solanum tuberosum HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 78.2
VMungo1215G0536 Vigna mungo HOM05D004796 ORTHO05D006527 3.2e-14 80.9 55 80.0
Aqoxy6G02400 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 4.2e-14 80.5 55 78.2
CAN.G529.24 Capsicum annuum HOM05D004796 ORTHO05D006527 4.2e-14 80.5 55 76.4
TAR628G0926 Trochodendron aralioides HOM05D004796 ORTHO05D006527 4.2e-14 80.5 55 78.2
Zm00001eb310290 Zea mays HOM05D004796 ORTHO05D006527 4.2e-14 80.5 55 76.4
CDE01G0270 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 7.1e-14 79.7 55 76.4
CDE02G1131 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 7.1e-14 79.7 55 76.4
Dinv26978 Davidia involucrata HOM05D004796 ORTHO05D016811 7.1e-14 79.7 55 80.0
Peaxi162Scf00854g00110 Petunia axillaris HOM05D004796 ORTHO05D006527 7.1e-14 79.7 55 78.2
Migut.H00312 Erythranthe guttata HOM05D004796 ORTHO05D006527 9.2e-14 79.3 55 76.4
Manes.12G119000 Manihot esculenta HOM05D004796 ORTHO05D006527 9.2e-14 79.3 55 78.2
PRCOL_00005106 Prasinoderma coloniale HOM05D004796 ORTHO05D006527 9.2e-14 79.3 55 74.5
SEGI_09827 Sequoiadendron giganteum HOM05D004796 ORTHO05D006527 9.2e-14 79.3 55 78.2
Solyc02g091900.4 Solanum lycopersicum HOM05D004796 ORTHO05D006527 9.2e-14 79.3 55 76.4
Sopen02g036470 Solanum pennellii HOM05D004796 ORTHO05D006527 9.2e-14 79.3 55 76.4
Mapoly0184s0007 Marchantia polymorpha HOM05D004796 ORTHO05D006527 1.2e-13 79.0 55 76.4
FvH4_3g39110 Fragaria vesca HOM05D004796 ORTHO05D016811 1.6e-13 78.6 54 79.6
Haze_27134 Corylus avellana HOM05D004796 ORTHO05D006527 1.3e-12 75.5 53 75.5
Cre02.g146250 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D006527 3.0e-12 74.3 55 67.3
HPP92_019568 Vanilla planifolia HOM05D004796 ORTHO05D016811 3.9e-12 73.9 55 76.4
TAR381G1547 Trochodendron aralioides HOM05D004796 ORTHO05D006527 4.3e-11 70.5 48 79.2
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 7.3e-11 69.7 41 78.0
Cfa026265 Carpinus fangiana HOM05D004796 ORTHO05D006527 4.8e-10 67.0 53 66.0
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 4.9e-07 57.0 43 79.1


User provided reference genes

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