Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 3.0e-84 315.1 154 100.0
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 2.6e-80 302.0 162 93.8
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.5e-75 286.2 162 89.5
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 5.4e-73 277.7 162 87.0
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 2.7e-72 275.4 156 89.1
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 1.8e-68 262.7 221 64.7
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 5.2e-68 261.2 221 65.2
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 5.2e-68 261.2 221 65.2
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 2.6e-67 258.8 221 64.3
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 2.6e-67 258.8 221 64.3
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 7.5e-67 257.3 221 65.2
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 7.5e-67 257.3 221 65.2
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 7.5e-67 257.3 221 65.2
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 7.5e-67 257.3 221 65.2
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 7.5e-67 257.3 221 65.2
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 9.8e-67 256.9 221 64.3
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 1.3e-66 256.5 221 63.8
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 1.7e-66 256.1 221 63.8
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 2.8e-66 255.4 221 63.8
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 4.9e-66 254.6 215 64.7
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 6.3e-66 254.2 221 64.7
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 1.1e-65 253.4 221 63.3
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 3.1e-65 251.9 221 63.3
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 2.7e-64 248.8 214 63.6
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 3.3e-62 241.9 215 60.0
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 5.5e-62 241.1 215 59.5
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 7.2e-62 240.7 221 58.8
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 9.5e-62 240.4 215 60.5
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 9.5e-62 240.4 215 59.5
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 1.2e-61 240.0 215 60.5
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 1.2e-61 240.0 215 60.0
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.2e-61 240.0 215 59.5
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.6e-61 239.6 223 58.3
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.6e-61 239.6 215 60.5
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.1e-61 239.2 221 58.4
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 2.8e-61 238.8 214 59.3
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 3.6e-61 238.4 215 59.1
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 4.7e-61 238.0 215 60.0
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 8.0e-61 237.3 221 58.4
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.0e-60 236.9 215 58.6
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.0e-60 236.9 221 57.9
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 1.0e-60 236.9 221 57.9
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.0e-60 236.9 215 58.6
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 1.4e-60 236.5 214 58.4
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 1.4e-60 236.5 215 60.0
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 1.4e-60 236.5 215 59.5
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.8e-60 236.1 214 59.3
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.8e-60 236.1 214 59.3
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 1.8e-60 236.1 214 59.3
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 1.8e-60 236.1 215 59.1
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 2.3e-60 235.7 214 59.3
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 2.3e-60 235.7 214 59.3
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 2.3e-60 235.7 215 58.1
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 3.0e-60 235.3 215 59.1
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.0e-60 235.3 215 58.6
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 3.0e-60 235.3 215 59.1
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 4.0e-60 235.0 215 58.6
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 4.0e-60 235.0 215 58.6
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 4.0e-60 235.0 215 59.1
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 4.0e-60 235.0 216 57.4
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 5.2e-60 234.6 214 58.4
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 5.2e-60 234.6 214 58.4
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 5.2e-60 234.6 215 58.6
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 5.2e-60 234.6 218 57.8
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 6.8e-60 234.2 215 57.7
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 8.9e-60 233.8 215 58.1
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 8.9e-60 233.8 211 58.8
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.9e-60 233.8 215 59.1
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.9e-60 233.8 215 59.1
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 8.9e-60 233.8 215 58.1
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 8.9e-60 233.8 214 58.4
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 8.9e-60 233.8 221 57.9
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.2e-59 233.4 215 58.6
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.2e-59 233.4 221 57.5
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 1.2e-59 233.4 215 57.7
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 1.2e-59 233.4 215 59.1
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.2e-59 233.4 215 59.1
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.5e-59 233.0 221 57.0
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.5e-59 233.0 212 58.5
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.5e-59 233.0 215 58.1
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.5e-59 233.0 215 57.7
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 1.5e-59 233.0 214 57.9
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 2.0e-59 232.6 216 57.4
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 2.6e-59 232.3 215 57.7
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 2.6e-59 232.3 215 57.2
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 2.6e-59 232.3 215 58.1
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 3.4e-59 231.9 215 58.6
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 3.4e-59 231.9 215 58.1
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 4.4e-59 231.5 215 58.1
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 4.4e-59 231.5 215 57.2
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 5.7e-59 231.1 215 57.7
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 7.5e-59 230.7 221 56.1
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 7.5e-59 230.7 215 57.7
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 7.5e-59 230.7 215 57.7
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 7.5e-59 230.7 215 57.2
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 9.8e-59 230.3 215 58.6
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 9.8e-59 230.3 215 57.7
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 9.8e-59 230.3 214 58.4
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 9.8e-59 230.3 215 57.2
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 9.8e-59 230.3 214 57.9
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 2.2e-58 229.2 215 57.2
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 2.2e-58 229.2 215 58.1
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.9e-58 228.8 221 56.1
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 2.9e-58 228.8 213 56.8
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 3.7e-58 228.4 216 56.9
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 3.7e-58 228.4 218 56.9
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 4.9e-58 228.0 213 57.7
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 4.9e-58 228.0 216 56.9
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 6.3e-58 227.6 215 57.2
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 8.3e-58 227.3 214 57.0
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 8.3e-58 227.3 215 56.3
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 1.1e-57 226.9 214 56.1
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 1.8e-57 226.1 213 57.7
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 2.4e-57 225.7 215 56.3
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 5.4e-57 224.6 119 89.9
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 7.0e-57 224.2 216 55.6
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 1.2e-56 223.4 216 54.6
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 2.0e-56 222.6 213 56.3
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.6e-56 221.5 212 57.1
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.5e-54 216.5 119 86.6
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 1.5e-54 216.5 119 84.9
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.5e-54 215.7 223 52.9
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 2.5e-54 215.7 212 54.2
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.3e-54 214.2 204 56.9
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 8.0e-53 210.7 212 53.8
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.8e-52 209.5 218 52.8
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.5e-51 204.1 124 79.0
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 4.9e-50 201.4 207 55.1
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 6.4e-50 201.1 215 51.6
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.1e-49 200.3 213 51.2
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.1e-49 200.3 202 54.5
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.0e-48 196.1 206 52.9
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 4.6e-48 194.9 147 71.4
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 2.5e-46 189.1 211 50.2
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 2.5e-46 189.1 207 50.7
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 8.1e-45 184.1 221 51.6
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.0e-43 179.5 207 49.8
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 3.4e-43 178.7 206 48.5
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.7e-37 158.3 93 81.7
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 1.4e-36 156.8 85 87.1
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.9e-34 149.1 113 60.2
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 2.8e-29 132.5 156 53.8
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 2.3e-23 112.8 120 46.7
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 4.3e-22 108.6 133 42.1
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 6.9e-20 101.3 51 100.0
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 6.9e-20 101.3 59 76.3
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 4.9e-18 95.1 58 79.3
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 1.2e-16 90.5 122 40.2
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 7.6e-11 71.2 126 35.7
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 1.1e-06 57.4 27 100.0


User provided reference genes

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