Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.6e-55 219.2 110 100.0
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 1.0e-46 189.9 125 79.2
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 1.0e-46 189.9 125 79.2
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 1.0e-46 189.9 125 79.2
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 2.3e-46 188.7 131 76.3
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 5.2e-46 187.6 131 75.6
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 3.5e-42 174.9 131 71.8
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.3e-41 172.9 131 71.8
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 1.7e-41 172.6 131 70.2
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.1e-40 169.9 131 69.5
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 7.3e-40 167.2 131 67.2
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.6e-39 166.0 131 67.2
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 3.5e-34 148.3 131 61.8
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 4.7e-31 137.9 135 55.6
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.4e-30 136.3 135 54.8
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 2.3e-30 135.6 131 58.0
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 2.6e-29 132.1 131 55.0
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.9e-28 127.9 135 52.6
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 6.4e-28 127.5 135 51.9
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 1.4e-27 126.3 131 53.4
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.9e-27 125.9 135 51.9
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.4e-27 125.6 129 51.9
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 3.2e-27 125.2 128 53.9
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.1e-27 124.8 128 53.9
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 4.1e-27 124.8 131 51.9
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 4.1e-27 124.8 131 51.9
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 5.4e-27 124.4 131 55.0
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 9.2e-27 123.6 131 51.9
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.6e-26 121.3 134 51.5
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 4.6e-26 121.3 135 48.9
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 6.0e-26 120.9 134 50.0
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 6.0e-26 120.9 135 49.6
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 6.0e-26 120.9 134 50.7
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 6.0e-26 120.9 134 50.0
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 6.0e-26 120.9 134 50.7
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.0e-25 120.2 135 48.1
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 2.3e-25 119.0 132 54.5
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.0e-25 118.6 134 49.3
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 3.9e-25 118.2 134 50.7
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 8.6e-25 117.1 133 48.9
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.1e-24 116.7 134 49.3
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.1e-24 116.7 134 49.3
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.5e-24 116.3 129 50.4
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 1.9e-24 115.9 134 48.5
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.9e-24 115.9 133 48.1
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 7.3e-24 114.0 135 49.6
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 1.6e-23 112.8 135 46.7
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.1e-23 112.5 134 47.0
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 2.8e-23 112.1 137 45.3
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 4.7e-23 111.3 134 46.3
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 6.2e-23 110.9 129 49.6
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 8.1e-23 110.5 134 45.5
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 8.1e-23 110.5 135 48.1
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.1e-22 110.2 134 46.3
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.1e-22 110.2 134 46.3
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 1.1e-22 110.2 135 45.9
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.4e-22 109.8 134 44.8
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.8e-22 109.4 120 48.3
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 1.8e-22 109.4 128 49.2
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 2.4e-22 109.0 134 45.5
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 2.4e-22 109.0 137 44.5
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 3.1e-22 108.6 133 46.6
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 4.0e-22 108.2 133 48.1
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 4.0e-22 108.2 135 45.9
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 5.2e-22 107.8 128 49.2
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 6.8e-22 107.5 134 45.5
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 8.9e-22 107.1 134 44.8
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.5e-21 106.3 134 44.8
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 3.4e-21 105.1 134 45.5
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 4.4e-21 104.8 129 50.4
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 7.6e-21 104.0 64 78.1
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 2.2e-20 102.4 135 42.2
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 2.2e-20 102.4 135 42.2
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 3.8e-20 101.7 134 42.5
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 4.9e-20 101.3 135 40.7
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 4.9e-20 101.3 134 44.0
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 4.9e-20 101.3 132 41.7
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 4.9e-20 101.3 135 41.5
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.9e-19 99.4 137 41.6
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 2.1e-18 95.9 135 44.4
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 4.6e-18 94.7 132 40.9
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 6.0e-18 94.4 138 39.1
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 7.8e-18 94.0 138 39.1
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.0e-17 93.6 135 43.7
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.3e-17 93.2 134 42.5
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.3e-17 93.2 134 42.5
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 3.0e-17 92.0 137 39.4
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 5.1e-17 91.3 137 40.9
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 5.1e-17 91.3 135 38.5
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.5e-16 89.0 133 40.6
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 2.5e-16 89.0 132 40.2
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 4.3e-16 88.2 111 46.8
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 9.6e-16 87.0 137 42.3
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 9.6e-16 87.0 136 38.2
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 1.2e-15 86.7 136 41.9
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 2.1e-15 85.9 137 40.9
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 3.6e-15 85.1 133 38.3
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 4.7e-15 84.7 140 40.7
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 5.2e-14 81.3 137 37.2
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 6.9e-14 80.9 134 38.1
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 1.5e-13 79.7 131 37.4
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.5e-13 79.7 131 35.9
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 2.0e-13 79.3 123 39.0
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 2.6e-13 79.0 39 94.9
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 9.9e-13 77.0 132 37.9
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 3.8e-12 75.1 133 35.3
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 5.4e-11 71.2 113 32.7
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 3.5e-10 68.6 97 42.3
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.3e-07 60.1 45 62.2
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 4.8e-07 58.2 60 45.0
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 4.0e-06 55.1 26 96.2
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 6.9e-06 54.3 61 39.3


User provided reference genes

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