Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 7.6e-132 473.8 230 100.0
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 2.0e-63 246.5 127 94.5
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 6.6e-59 231.5 118 95.8
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.0e-51 207.6 113 87.6
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.0e-51 207.6 113 87.6
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-51 207.2 144 72.9
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 5.0e-51 205.3 113 86.7
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 5.0e-51 205.3 113 86.7
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 6.6e-51 204.9 104 96.2
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 6.6e-51 204.9 113 86.7
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 2.3e-48 196.4 133 75.9
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 6.4e-46 188.3 110 81.8
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.1e-45 187.6 110 80.9
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 7.0e-45 184.9 94 95.7
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 9.2e-45 184.5 110 80.0
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.2e-44 184.1 113 77.9
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 4.7e-41 172.2 110 74.5
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.0e-39 166.8 110 71.8
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 3.4e-39 166.0 110 70.9
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 3.4e-39 166.0 113 70.8
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 3.2e-37 159.5 110 70.0
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 7.1e-37 158.3 110 69.1
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.6e-36 157.1 117 67.5
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 2.1e-36 156.8 110 68.2
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 2.1e-36 156.8 110 68.2
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 2.7e-36 156.4 110 68.2
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 2.7e-36 156.4 110 66.4
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 2.7e-36 156.4 110 68.2
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 4.6e-36 155.6 110 70.0
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.0e-35 154.5 123 65.0
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-34 151.0 110 66.4
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 2.5e-34 149.8 110 64.5
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 3.3e-34 149.4 110 63.6
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.2e-33 147.5 110 63.6
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.2e-33 147.5 110 63.6
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 8.9e-32 141.4 110 64.5
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.3e-30 137.5 129 59.7
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 2.9e-30 136.3 128 54.7
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 4.2e-29 132.5 77 84.4
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 7.1e-29 131.7 113 55.8
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.2e-28 131.0 129 53.5
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 1.2e-28 131.0 111 53.2
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 1.6e-28 130.6 125 53.6
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.6e-28 130.6 113 56.6
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 2.1e-28 130.2 118 52.5
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 2.1e-28 130.2 117 51.3
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 2.1e-28 130.2 122 52.5
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 3.5e-28 129.4 111 52.3
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 3.5e-28 129.4 126 49.2
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 4.6e-28 129.0 118 56.8
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 4.6e-28 129.0 110 56.4
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 4.6e-28 129.0 118 51.7
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 6.0e-28 128.6 111 52.3
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 7.8e-28 128.3 126 50.8
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 7.8e-28 128.3 129 51.2
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 1.0e-27 127.9 110 52.7
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.0e-27 127.9 110 54.5
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.0e-27 127.9 110 54.5
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 3.9e-27 125.9 124 49.2
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 3.9e-27 125.9 117 51.3
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 3.9e-27 125.9 111 53.2
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 5.1e-27 125.6 110 52.7
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 6.6e-27 125.2 110 52.7
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 8.7e-27 124.8 110 51.8
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.1e-26 124.4 117 53.8
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.1e-26 124.4 110 51.8
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.5e-26 124.0 110 51.8
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 2.5e-26 123.2 110 52.7
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 4.3e-26 122.5 110 52.7
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 7.3e-26 121.7 110 50.9
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 7.3e-26 121.7 110 52.7
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 9.6e-26 121.3 110 50.0
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 9.6e-26 121.3 111 49.5
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 9.6e-26 121.3 125 45.6
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 1.3e-25 120.9 111 51.4
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.3e-25 120.9 110 50.9
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.6e-25 120.6 117 49.6
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.1e-25 120.2 112 49.1
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.1e-25 120.2 112 49.1
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 2.8e-25 119.8 110 48.2
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 3.6e-25 119.4 126 44.4
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 3.6e-25 119.4 119 48.7
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 4.8e-25 119.0 110 50.9
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 4.8e-25 119.0 110 50.9
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 4.8e-25 119.0 110 48.2
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 6.2e-25 118.6 121 48.8
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 6.2e-25 118.6 111 50.5
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 8.1e-25 118.2 117 47.9
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 8.1e-25 118.2 117 51.3
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.1e-24 117.9 110 50.9
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.4e-24 117.5 123 47.2
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.8e-24 117.1 110 50.0
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.8e-24 117.1 110 50.0
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.8e-24 117.1 110 50.0
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.8e-24 117.1 111 48.6
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 4.0e-24 115.9 110 48.2
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 4.0e-24 115.9 110 48.2
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 4.0e-24 115.9 113 49.6
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 6.9e-24 115.2 117 46.2
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.2e-23 114.4 122 45.9
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.5e-23 114.0 117 48.7
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.6e-23 113.2 117 47.0
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 4.4e-23 112.5 117 47.9
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.4e-23 112.5 113 46.9
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 7.6e-23 111.7 113 46.9
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 9.9e-23 111.3 117 46.2
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 9.9e-23 111.3 113 45.1
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 1.7e-22 110.5 117 45.3
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 2.2e-22 110.2 117 46.2
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 2.9e-22 109.8 111 47.7
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 3.8e-22 109.4 111 46.8
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 6.4e-22 108.6 111 45.0
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 6.4e-22 108.6 111 46.8
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 8.4e-22 108.2 110 46.4
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.1e-21 107.8 113 42.5
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.1e-21 107.8 113 44.2
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 1.4e-21 107.5 111 47.7
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 1.4e-21 107.5 111 45.9
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.4e-21 107.5 113 44.2
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 1.9e-21 107.1 110 43.6
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 3.2e-21 106.3 121 45.5
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 3.2e-21 106.3 121 44.6
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 4.2e-21 105.9 110 45.5
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.2e-21 105.9 111 45.0
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 5.4e-21 105.5 110 43.6
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 5.4e-21 105.5 130 44.6
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 9.3e-21 104.8 110 45.5
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.2e-20 104.4 111 44.1
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.2e-20 104.4 111 45.0
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.6e-20 104.0 109 48.6
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.6e-20 104.0 110 41.8
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 2.7e-20 103.2 113 42.5
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.5e-20 102.8 110 42.7
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 3.5e-20 102.8 113 42.5
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 1.0e-19 101.3 110 41.8
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.0e-19 101.3 110 41.8
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.3e-19 100.9 110 45.5
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 3.0e-19 99.8 110 44.5
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 5.1e-19 99.0 111 42.3
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 5.1e-19 99.0 110 42.7
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.5e-18 97.4 111 43.2
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 3.3e-18 96.3 88 51.1
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 9.6e-18 94.7 125 43.2
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 6.2e-17 92.0 115 42.6
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.1e-16 89.7 118 39.8
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.0e-16 89.4 110 40.9
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 4.0e-16 89.4 109 42.2
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 5.3e-16 89.0 118 36.4
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.0e-15 87.0 154 35.7
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 2.6e-15 86.7 110 38.2
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.6e-15 86.7 118 39.0
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 4.5e-15 85.9 109 38.5
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 5.8e-15 85.5 63 66.7
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 9.9e-15 84.7 77 51.9
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 8.4e-14 81.6 111 39.6
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.1e-12 77.0 80 46.2
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.7e-12 76.6 95 41.1
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 7.9e-12 75.1 78 46.2
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 1.3e-11 74.3 111 36.9
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 5.1e-11 72.4 109 33.0
C07p15010 Brassica napus HOM05D000901 ORTHO05D103166 7.4e-10 68.6 45 73.3
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 2.8e-09 66.6 112 35.7
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 3.7e-09 66.2 110 39.1
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 2.6e-07 60.1 55 50.9
BolC3t18301H Brassica oleracea HOM05D060369 ORTHO05D039230 5.8e-07 58.9 40 70.0
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 1.7e-06 57.4 90 37.8
BcaC07g42528 Brassica carinata HOM05D037012 ORTHO05D039422 8.4e-06 55.1 63 50.8


User provided reference genes

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