Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 0.0e+00 1129.4 617 100.0
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 6.8e-252 874.0 631 82.4
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 6.8e-252 874.0 631 82.4
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 8.6e-223 777.3 645 75.8
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 1.9e-222 776.2 645 75.7
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 4.2e-209 731.9 648 69.1
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 2.8e-205 719.2 645 68.1
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 2.4e-204 716.1 646 67.5
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 4.4e-203 711.8 645 65.7
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 7.6e-203 711.1 647 67.4
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.4e-201 706.8 645 66.7
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.4e-164 583.9 652 56.0
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.4e-161 573.9 655 54.0
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 1.2e-128 464.5 654 48.2
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 3.4e-126 456.4 645 48.5
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 3.2e-124 449.9 643 47.9
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 4.1e-124 449.5 643 47.7
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 9.2e-124 448.4 655 45.2
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 9.2e-124 448.4 646 46.0
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.2e-123 448.0 645 47.3
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.6e-123 446.0 644 47.2
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 3.9e-122 443.0 649 48.4
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 6.6e-122 442.2 649 45.5
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 9.5e-121 438.3 650 45.5
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.8e-120 436.8 677 43.9
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 3.6e-120 436.4 653 45.8
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 7.5e-118 428.7 654 46.3
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 3.9e-114 416.4 644 44.7
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 5.6e-113 412.5 659 44.6
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.3e-109 401.4 654 42.5
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 2.2e-109 400.6 674 41.8
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 2.2e-109 400.6 645 43.1
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.1e-108 398.3 660 43.5
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 1.1e-108 398.3 653 43.3
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 1.4e-108 397.9 658 43.9
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.4e-108 397.1 645 42.9
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 7.1e-108 395.6 658 43.3
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.6e-107 394.4 646 43.0
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.6e-107 394.4 648 42.1
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 7.8e-107 392.1 652 44.5
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 5.1e-106 389.4 660 41.8
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 6.6e-106 389.0 669 43.8
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 8.6e-106 388.7 642 42.1
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.5e-105 387.9 652 42.8
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 7.3e-105 385.6 646 42.9
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 6.2e-104 382.5 664 43.4
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 5.2e-103 379.4 630 41.6
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 4.4e-102 376.3 654 40.1
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 3.7e-101 373.2 652 42.5
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 8.4e-101 372.1 652 40.5
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 8.4e-101 372.1 660 43.9
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 5.4e-100 369.4 649 43.0
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.3e-98 364.8 664 39.5
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.7e-98 364.4 647 41.0
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 3.0e-98 363.6 646 39.9
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.3e-97 360.1 604 42.9
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 4.3e-97 359.8 655 44.6
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 1.6e-96 357.8 654 40.2
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 2.1e-96 357.5 644 41.3
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 2.1e-96 357.5 672 37.4
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 3.1e-95 353.6 714 39.1
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 5.2e-95 352.8 618 41.7
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.2e-94 351.7 652 41.4
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.5e-94 351.3 596 45.0
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 5.8e-94 349.4 748 36.2
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 9.9e-94 348.6 659 39.5
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 3.8e-93 346.7 646 40.7
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 1.4e-92 344.7 688 38.5
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 4.2e-92 343.2 646 42.6
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 5.4e-92 342.8 686 39.5
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 5.4e-92 342.8 748 36.2
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 7.1e-92 342.4 619 43.1
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.2e-91 341.7 575 42.6
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.1e-89 335.1 651 37.8
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 1.5e-89 334.7 663 39.4
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 4.3e-89 333.2 633 38.7
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 2.8e-88 330.5 707 37.3
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.8e-88 330.5 680 39.0
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 6.4e-85 319.3 654 37.6
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 1.2e-83 315.1 649 38.4
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 2.1e-83 314.3 383 50.9
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 3.5e-83 313.5 662 37.3
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 6.0e-83 312.8 649 38.2
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 7.9e-83 312.4 674 37.1
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.3e-80 305.1 709 35.0
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.3e-80 305.1 709 35.0
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 4.0e-79 300.1 545 40.9
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 4.0e-79 300.1 680 34.9
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.3e-77 295.0 647 36.2
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 3.8e-77 293.5 647 38.6
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.6e-75 288.1 633 35.2
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 3.5e-75 287.0 650 38.3
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 7.9e-75 285.8 409 47.4
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 7.9e-75 285.8 477 40.3
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 2.5e-73 280.8 659 37.2
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 2.8e-72 277.3 607 38.9
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 1.8e-71 274.6 643 37.0
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 2.4e-71 274.2 655 37.6
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 5.8e-70 269.6 644 34.9
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 5.0e-53 213.4 553 32.7
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.1e-52 212.2 595 31.8
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 2.5e-52 211.1 176 77.3
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 3.2e-52 210.7 557 33.2
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 5.1e-50 203.4 449 34.5
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 2.0e-46 191.4 185 69.2
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.3e-45 188.7 125 79.2
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.2e-44 184.1 242 48.8
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 4.7e-43 180.3 139 64.7
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 6.1e-43 179.9 383 36.0
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.2e-40 171.4 136 64.0
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 8.5e-37 159.5 511 28.6
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.4e-34 152.1 345 35.1
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.4e-33 147.1 113 64.6
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.5e-33 146.4 167 48.5
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.0e-29 136.0 118 57.6
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.0e-29 136.0 145 49.0
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 6.8e-26 123.2 97 64.9
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.0e-25 121.7 176 46.0
C03p60220 Brassica napus HOM05D055775 ORTHO05D041469 4.1e-23 114.0 169 62.7
BolC3t18284H Brassica oleracea HOM05D055775 ORTHO05D041469 4.1e-23 114.0 169 62.7
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 7.0e-23 113.2 72 77.8
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 9.1e-23 112.8 111 54.1
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.2e-22 112.5 82 63.4
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.3e-21 109.0 478 27.8
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 7.2e-20 103.2 504 23.6
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 3.6e-19 100.9 174 35.1
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 3.6e-19 100.9 156 42.9
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 5.7e-17 93.6 291 34.7
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 2.0e-14 85.1 87 51.7
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 7.7e-14 83.2 120 46.7
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 1.3e-13 82.4 66 72.7
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 5.0e-13 80.5 283 30.0
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 8.6e-13 79.7 113 39.8
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.4e-07 61.6 137 37.2


User provided reference genes

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