Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 3.5e-98 361.7 189 100.0
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 7.0e-91 337.4 180 97.2
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 3.5e-90 335.1 180 95.6
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 3.5e-90 335.1 180 95.6
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 2.1e-87 325.9 180 93.3
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 1.2e-82 310.1 176 89.2
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 1.0e-81 307.0 180 86.1
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 1.2e-79 300.1 180 83.9
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 6.1e-79 297.7 173 87.3
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 8.0e-79 297.4 172 87.2
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.2e-77 293.5 172 86.0
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 7.0e-75 284.3 171 82.5
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 7.5e-69 264.2 168 79.2
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 4.9e-68 261.5 176 76.1
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 3.5e-66 255.4 176 71.6
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.7e-65 253.1 175 73.1
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 3.3e-64 248.8 174 71.8
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 9.5e-64 247.3 173 72.3
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.6e-63 246.5 176 72.2
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 3.6e-63 245.4 169 74.6
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 3.6e-63 245.4 170 73.5
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 1.8e-62 243.0 181 70.7
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 2.3e-62 242.7 174 70.1
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 3.1e-62 242.3 169 72.8
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 5.2e-62 241.5 170 70.0
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 6.8e-62 241.1 170 73.5
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 6.8e-62 241.1 176 68.8
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 6.8e-62 241.1 170 70.6
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.2e-61 240.4 177 71.8
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.2e-61 240.4 173 68.8
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.5e-61 240.0 176 69.3
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 2.0e-61 239.6 175 70.3
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 2.6e-61 239.2 176 69.9
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 2.6e-61 239.2 174 70.1
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 2.6e-61 239.2 176 69.9
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 3.4e-61 238.8 181 69.6
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 3.4e-61 238.8 181 69.6
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 3.4e-61 238.8 170 70.0
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 4.4e-61 238.4 177 69.5
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 4.4e-61 238.4 176 69.3
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 4.4e-61 238.4 192 66.7
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 7.5e-61 237.7 181 70.2
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 7.5e-61 237.7 174 70.1
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 2.2e-60 236.1 179 68.7
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 3.7e-60 235.3 171 69.0
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 3.7e-60 235.3 181 69.1
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 4.9e-60 235.0 174 68.4
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 8.3e-60 234.2 179 66.5
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 2.4e-59 232.6 175 70.3
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 3.2e-59 232.3 177 67.8
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 3.2e-59 232.3 175 70.3
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 9.2e-59 230.7 175 69.1
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 1.2e-58 230.3 168 69.0
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.1e-58 229.6 174 67.2
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 2.7e-58 229.2 177 64.4
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.5e-58 228.8 174 67.2
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.5e-58 228.8 179 65.9
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 4.6e-58 228.4 176 65.9
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 4.6e-58 228.4 181 64.1
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 4.6e-58 228.4 180 65.6
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 6.0e-58 228.0 174 69.5
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 6.0e-58 228.0 177 65.0
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 7.8e-58 227.6 176 65.3
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 7.8e-58 227.6 175 68.6
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 7.8e-58 227.6 176 65.3
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 1.0e-57 227.3 175 67.4
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 2.3e-57 226.1 180 65.0
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 3.0e-57 225.7 175 65.7
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 5.1e-57 224.9 176 67.0
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 6.6e-57 224.6 181 64.1
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 8.6e-57 224.2 174 64.9
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 2.5e-56 222.6 177 65.5
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.5e-56 222.6 173 64.2
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 2.5e-56 222.6 177 63.8
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 3.3e-56 222.2 180 62.8
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 3.3e-56 222.2 177 62.7
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 4.3e-56 221.9 176 63.6
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 5.6e-56 221.5 180 62.8
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 7.3e-56 221.1 174 64.4
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 6.2e-55 218.0 169 65.7
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 1.1e-54 217.2 173 66.5
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 1.1e-54 217.2 180 63.3
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.4e-54 216.9 176 66.5
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 1.4e-54 216.9 180 62.8
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 8.9e-54 214.2 179 62.0
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 5.8e-53 211.5 176 60.8
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 7.5e-53 211.1 175 64.0
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 1.3e-52 210.3 177 61.6
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 1.3e-52 210.3 177 61.6
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.3e-52 210.3 156 67.9
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.7e-52 208.8 169 62.7
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 4.9e-52 208.4 156 67.9
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 4.9e-52 208.4 177 62.1
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 4.1e-51 205.3 172 65.7
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 4.1e-51 205.3 177 59.9
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 9.2e-51 204.1 159 66.0
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 2.5e-48 196.1 176 60.2
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.9e-44 182.6 143 65.0
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 4.2e-43 178.7 163 61.3
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.0e-41 174.1 205 48.3
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 5.1e-41 171.8 201 47.8
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 3.3e-40 169.1 152 58.6
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.6e-39 165.6 133 62.4
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 5.3e-38 161.8 113 75.2
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 5.8e-37 158.3 179 52.5
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 2.4e-35 152.9 202 45.5
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 4.6e-34 148.7 131 60.3
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 1.7e-33 146.7 199 42.7
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.1e-32 144.1 134 57.5
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.3e-31 140.6 172 47.7
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 6.2e-23 111.7 87 66.7
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 1.8e-22 110.2 87 66.7
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 5.8e-21 105.1 173 41.0
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 5.5e-19 98.6 258 31.0
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 5.5e-19 98.6 133 42.1
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 7.1e-19 98.2 90 61.1
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 3.9e-17 92.4 55 83.6
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 8.7e-17 91.3 179 36.9
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 3.1e-14 82.8 55 74.5
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 8.4e-12 74.7 63 55.6
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 2.1e-10 70.1 63 52.4
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 3.1e-06 56.2 50 56.0


User provided reference genes

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