Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02745 Brassica carinata HOM05D006735 ORTHO05D009558 5.1e-99 364.4 179 100.0
C03p60980 Brassica napus HOM05D006735 ORTHO05D009558 5.1e-59 231.5 108 99.1
A07p02010 Brassica napus HOM05D006735 ORTHO05D009558 1.4e-45 186.8 108 77.8
BolC2t07818H Brassica oleracea HOM05D006735 ORTHO05D009558 2.5e-45 186.0 108 78.7
BcaC07g38146 Brassica carinata HOM05D006735 ORTHO05D009558 4.8e-41 171.8 108 67.6
BcaC04g20691 Brassica carinata HOM05D006735 ORTHO05D009558 4.1e-40 168.7 108 65.7
BcaC08g45821 Brassica carinata HOM05D006735 ORTHO05D009558 3.4e-39 165.6 108 66.7
BcaC03g15864 Brassica carinata HOM05D006735 ORTHO05D009558 1.0e-38 164.1 108 65.7
BcaC09g51566 Brassica carinata HOM05D006735 ORTHO05D009558 1.0e-38 164.1 108 65.7
BcaC09g48693 Brassica carinata HOM05D006735 ORTHO05D009558 1.7e-38 163.3 108 65.7
BcaC09g51945 Brassica carinata HOM05D006735 ORTHO05D009558 8.5e-38 161.0 108 63.9
A09p42550 Brassica napus HOM05D006735 ORTHO05D009558 7.2e-37 157.9 97 68.0
C05p19810 Brassica napus HOM05D006735 ORTHO05D009558 7.9e-36 154.5 103 65.0
A01p26730 Brassica napus HOM05D006735 ORTHO05D009558 1.0e-35 154.1 104 64.4
BcaC03g18043 Brassica carinata HOM05D006735 ORTHO05D009558 1.4e-35 153.7 108 63.9
A08p25200 Brassica napus HOM05D006735 ORTHO05D009558 1.4e-35 153.7 103 65.0
BolC2t09633H Brassica oleracea HOM05D006735 ORTHO05D009558 6.7e-35 151.4 103 64.1
C08p11240 Brassica napus HOM05D006735 ORTHO05D009558 8.8e-35 151.0 104 62.5
BcaB01g02897 Brassica carinata HOM05D006735 ORTHO05D009558 1.1e-34 150.6 108 62.0
BcaC01g03559 Brassica carinata HOM05D006735 ORTHO05D009558 1.1e-34 150.6 108 62.0
C01p49020 Brassica napus HOM05D006735 ORTHO05D009558 3.3e-34 149.1 100 65.0
C04p14090 Brassica napus HOM05D006735 ORTHO05D041910 1.4e-32 143.7 106 67.0
BcaC01g00870 Brassica carinata HOM05D006735 ORTHO05D009558 2.4e-32 142.9 108 59.3
AT2G19365 Arabidopsis thaliana HOM05D006735 ORTHO05D009558 3.9e-27 125.6 75 73.3
BcaC01g02272 Brassica carinata HOM05D006735 ORTHO05D009558 7.4e-26 121.3 107 54.2
C04p61000 Brassica napus HOM05D006735 ORTHO05D009558 1.8e-24 116.7 72 63.9
C09p40570 Brassica napus HOM05D006735 ORTHO05D009558 9.1e-24 114.4 72 63.9
BcaC08g43985 Brassica carinata HOM05D006735 ORTHO05D009558 2.6e-23 112.8 83 56.6
C09p40840 Brassica napus HOM05D006735 ORTHO05D009558 6.5e-22 108.2 72 63.9
BcaC05g27115 Brassica carinata HOM05D000034 ORTHO05D016699 2.5e-21 106.3 78 69.2
BolC3t17400H Brassica oleracea HOM05D006735 ORTHO05D009558 5.5e-21 105.1 100 52.0
BolC3t18997H Brassica oleracea HOM05D006735 ORTHO05D009558 2.0e-18 96.7 94 51.1
C04p69020 Brassica napus HOM05D000034 ORTHO05D000037 3.4e-18 95.9 75 64.0
BcaB05g22061 Brassica carinata HOM05D000034 ORTHO05D016699 7.5e-18 94.7 78 61.5
BcaC01g06241 Brassica carinata HOM05D000034 ORTHO05D000037 7.5e-18 94.7 78 61.5
BcaB04g16973 Brassica carinata HOM05D006735 ORTHO05D009558 1.7e-17 93.6 77 54.5
BcaB05g24182 Brassica carinata HOM05D000034 ORTHO05D016699 2.8e-17 92.8 78 60.3
BcaB05g23950 Brassica carinata HOM05D000034 ORTHO05D000037 8.3e-17 91.3 78 59.0
BcaC08g43145 Brassica carinata HOM05D000034 ORTHO05D000037 1.4e-16 90.5 77 58.4
BolC2t07759H Brassica oleracea HOM05D006735 ORTHO05D009558 2.4e-16 89.7 104 42.3
A07p01920 Brassica napus HOM05D006735 ORTHO05D009558 4.1e-16 89.0 98 41.8
BolC5t31791H Brassica oleracea HOM05D006735 ORTHO05D009558 1.6e-15 87.0 93 41.9
BraA09t36761Z Brassica rapa HOM05D006735 ORTHO05D009558 1.6e-15 87.0 93 41.9
BcaC04g23169 Brassica carinata HOM05D000034 ORTHO05D016699 2.7e-15 86.3 77 55.8
C05p42930 Brassica napus HOM05D006735 ORTHO05D009558 3.5e-15 85.9 104 37.5
C06p27010 Brassica napus HOM05D006735 ORTHO05D009558 3.5e-15 85.9 99 40.4
BolC5t33020H Brassica oleracea HOM05D006735 ORTHO05D009558 3.5e-15 85.9 104 37.5
BraA10t43706Z Brassica rapa HOM05D006735 ORTHO05D009558 4.5e-15 85.5 93 41.9
A05p40380 Brassica napus HOM05D006735 ORTHO05D009558 5.9e-15 85.1 93 40.9
C07p37620 Brassica napus HOM05D006735 ORTHO05D010262 5.9e-15 85.1 99 38.4
BcaC03g15863 Brassica carinata HOM05D000034 ORTHO05D016699 7.7e-15 84.7 66 62.1
BcaC04g20692 Brassica carinata HOM05D000034 ORTHO05D016699 7.7e-15 84.7 66 62.1
BolC3t19829H Brassica oleracea HOM05D006735 ORTHO05D009558 1.0e-14 84.3 99 39.4
BraA02t07687Z Brassica rapa HOM05D006735 ORTHO05D009558 1.3e-14 84.0 95 40.0
CARHR286360 Cardamine hirsuta HOM05D006735 ORTHO05D009558 3.8e-14 82.4 43 76.7
BolC7t41471H Brassica oleracea HOM05D006735 ORTHO05D009558 5.0e-14 82.0 99 37.4
BcaC02g11757 Brassica carinata HOM05D000034 ORTHO05D016699 6.5e-14 81.6 76 53.9
BcaC04g18966 Brassica carinata HOM05D006735 ORTHO05D009558 6.5e-14 81.6 100 40.0
BcaC09g51946 Brassica carinata HOM05D000034 ORTHO05D016699 6.5e-14 81.6 66 60.6
C08p03780 Brassica napus HOM05D006735 ORTHO05D009558 2.5e-13 79.7 99 36.4
C07p10210 Brassica napus HOM05D006735 ORTHO05D009558 3.2e-13 79.3 99 36.4
BcaC02g08079 Brassica carinata HOM05D006735 ORTHO05D009558 4.2e-13 79.0 95 41.1
BcaC05g25828 Brassica carinata HOM05D000034 ORTHO05D000037 1.2e-12 77.4 79 50.6
BolC9t53784H Brassica oleracea HOM05D010326 ORTHO05D012728 2.3e-11 73.2 99 36.4
BcaC01g02992 Brassica carinata HOM05D006735 ORTHO05D009558 6.8e-11 71.6 73 42.5
C07p50820 Brassica napus HOM05D010326 ORTHO05D012728 8.8e-11 71.2 99 35.4
BolC4t22522H Brassica oleracea HOM05D006735 ORTHO05D009558 4.9e-09 65.5 76 38.2
BolC8t50679H Brassica oleracea HOM05D006735 ORTHO05D009558 8.3e-09 64.7 73 38.4
Carub.0011s0008 Capsella rubella HOM05D010326 ORTHO05D012728 8.3e-09 64.7 99 32.3
C06p06110 Brassica napus HOM05D001371 ORTHO05D001319 1.4e-08 63.9 58 53.4
BraA05t19380Z Brassica rapa HOM05D012682 ORTHO05D014126 1.8e-08 63.5 95 33.7
C06p13580 Brassica napus HOM05D000034 ORTHO05D000037 2.4e-08 63.2 93 36.6
BraA10t42960Z Brassica rapa HOM05D006735 ORTHO05D009558 2.4e-08 63.2 73 37.0
BolC8t49602H Brassica oleracea HOM05D006735 ORTHO05D009558 3.1e-08 62.8 73 38.4
BolC9t55302H Brassica oleracea HOM05D006735 ORTHO05D009558 4.1e-08 62.4 67 40.3
BcaC04g22485 Brassica carinata HOM05D010326 ORTHO05D012728 5.4e-08 62.0 82 36.6
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.2e-07 60.8 101 30.7
BraA05t22472Z Brassica rapa HOM05D006735 ORTHO05D009558 1.6e-07 60.5 83 37.3
BcaB04g16972 Brassica carinata HOM05D000034 ORTHO05D000037 2.0e-07 60.1 98 34.7
BolC4t23000H Brassica oleracea HOM05D006735 ORTHO05D041910 3.5e-07 59.3 58 53.4
CSS0045263 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 3.5e-07 59.3 98 33.7
BcaC01g01276 Brassica carinata HOM05D000034 ORTHO05D000037 1.0e-06 57.8 103 41.7
CiPaw.15G017800 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.7e-06 57.0 101 28.7
THA.LOC104818562 Tarenaya hassleriana HOM05D010326 ORTHO05D000285 2.3e-06 56.6 94 31.9
THA.LOC104827195 Tarenaya hassleriana HOM05D006735 ORTHO05D009558 2.9e-06 56.2 104 26.0
CSS0014704 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.0e-06 55.5 95 33.7
CSS0024057 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.0e-06 55.5 95 33.7
CiPaw.04G117800 Carya illinoinensis HOM05D000876 ORTHO05D000285 5.0e-06 55.5 97 30.9
AL5G17530 Arabidopsis lyrata HOM05D008982 ORTHO05D011553 6.6e-06 55.1 109 29.4
A06p37980 Brassica napus HOM05D012682 ORTHO05D014126 6.6e-06 55.1 95 30.5
BolC3t21439H Brassica oleracea HOM05D000034 ORTHO05D016699 8.6e-06 54.7 76 50.0
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 8.6e-06 54.7 92 33.7
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 8.6e-06 54.7 92 33.7
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 8.6e-06 54.7 92 33.7


User provided reference genes

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