Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02689 Brassica carinata HOM05D003631 ORTHO05D004219 1.2e-67 259.6 124 100.0
BcaC01g03273 Brassica carinata HOM05D003631 ORTHO05D004219 1.5e-33 146.4 111 69.4
A03p43790 Brassica napus HOM05D003631 ORTHO05D004219 1.5e-33 146.4 111 69.4
C03p54110 Brassica napus HOM05D003631 ORTHO05D004219 1.5e-33 146.4 111 69.4
BraA03t13514Z Brassica rapa HOM05D003631 ORTHO05D004219 1.5e-33 146.4 111 69.4
Sp3g22360 Schrenkiella parvula HOM05D003631 ORTHO05D004219 2.6e-33 145.6 111 68.5
BcaB06g26661 Brassica carinata HOM05D003631 ORTHO05D004219 3.3e-33 145.2 111 68.5
A07p07710 Brassica napus HOM05D003631 ORTHO05D004219 3.3e-33 145.2 111 68.5
C07p11590 Brassica napus HOM05D003631 ORTHO05D004219 3.3e-33 145.2 111 68.5
BolC7t41632H Brassica oleracea HOM05D003631 ORTHO05D004219 3.3e-33 145.2 111 68.5
BraA07t28564Z Brassica rapa HOM05D003631 ORTHO05D004219 3.3e-33 145.2 111 68.5
BcaC06g35727 Brassica carinata HOM05D003631 ORTHO05D004219 7.4e-33 144.1 111 67.6
Carub.0003s2496 Capsella rubella HOM05D003631 ORTHO05D004219 2.2e-32 142.5 111 66.7
AL3G40110 Arabidopsis lyrata HOM05D003631 ORTHO05D004219 3.7e-32 141.7 111 66.7
Thhalv10002655m.g Eutrema salsugineum HOM05D003631 ORTHO05D004219 4.8e-32 141.4 111 66.7
BcaB03g14575 Brassica carinata HOM05D003631 ORTHO05D004219 1.4e-31 139.8 99 74.7
CARHR100800 Cardamine hirsuta HOM05D003631 ORTHO05D004219 3.5e-30 135.2 111 63.1
Aa31sc29G40 Aethionema arabicum HOM05D003631 ORTHO05D004219 1.9e-28 129.4 118 60.2
AT3G24570 Arabidopsis thaliana HOM05D003631 ORTHO05D004219 2.5e-28 129.0 121 59.5
THA.LOC104804593 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 7.2e-28 127.5 111 59.5
THA.LOC104821638 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 6.1e-27 124.4 111 58.6
Prupe.7G232500 Prunus persica HOM05D003631 ORTHO05D004219 2.3e-26 122.5 111 58.6
MD02G1045400 Malus domestica HOM05D003631 ORTHO05D004219 9.7e-25 117.1 111 55.9
TAR636G2591 Trochodendron aralioides HOM05D003631 ORTHO05D004219 1.3e-24 116.7 110 53.6
TAR624G0826 Trochodendron aralioides HOM05D003631 ORTHO05D004219 2.2e-24 115.9 110 52.7
Eucgr.C03819 Eucalyptus grandis HOM05D003631 ORTHO05D004219 8.2e-24 114.0 111 53.2
Gorai.010G072100 Gossypium raimondii HOM05D003631 ORTHO05D004219 8.2e-24 114.0 110 51.8
RcHm_v2.0_Chr2g0090261 Rosa chinensis HOM05D003631 ORTHO05D004219 8.2e-24 114.0 110 53.6
Ciclev10009440m.g Citrus clementina HOM05D003631 ORTHO05D004219 1.1e-23 113.6 109 53.2
Hma1.2p1_1151F.1_g262060 Hydrangea macrophylla HOM05D003631 ORTHO05D004219 1.1e-23 113.6 110 51.8
FAN23G2002 Fragaria x ananassa HOM05D003631 ORTHO05D004219 1.4e-23 113.2 110 53.6
Potri.018G081600 Populus trichocarpa HOM05D003631 ORTHO05D004219 1.4e-23 113.2 111 51.4
Sabra18G0068700 Salix brachista HOM05D003631 ORTHO05D004219 1.8e-23 112.8 110 50.9
Dinv36643 Davidia involucrata HOM05D003631 ORTHO05D004219 2.4e-23 112.5 97 56.7
FAN26G2044 Fragaria x ananassa HOM05D003631 ORTHO05D004219 3.1e-23 112.1 110 52.7
Manes.16G114800 Manihot esculenta HOM05D003631 ORTHO05D004219 5.3e-23 111.3 110 50.9
Atru.chr7.1365 Acer truncatum HOM05D003631 ORTHO05D004219 7.0e-23 110.9 110 51.8
Nitab4.5_0001567g0050 Nicotiana tabacum HOM05D003631 ORTHO05D004219 7.0e-23 110.9 110 50.0
CAN.G309.79 Capsicum annuum HOM05D003631 ORTHO05D004219 9.1e-23 110.5 110 50.0
Nitab4.5_0000664g0300 Nicotiana tabacum HOM05D003631 ORTHO05D004219 9.1e-23 110.5 110 50.0
CANSAT56G0429 Cannabis sativa HOM05D003631 ORTHO05D004219 1.2e-22 110.2 111 51.4
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 1.2e-22 110.2 113 50.4
CDE05G3059 Ceratophyllum demersum HOM05D003631 ORTHO05D004219 1.2e-22 110.2 113 49.6
FvH4_1g04560 Fragaria vesca HOM05D003631 ORTHO05D004219 1.2e-22 110.2 110 52.7
FAN19G0016 Fragaria x ananassa HOM05D003631 ORTHO05D004219 1.2e-22 110.2 110 52.7
Cpa.g.sc23.96 Carica papaya HOM05D003631 ORTHO05D004219 2.0e-22 109.4 111 52.3
Cc06_g09780 Coffea canephora HOM05D003631 ORTHO05D004219 2.0e-22 109.4 110 50.0
Duzib150G1599 Durio zibethinus HOM05D003631 ORTHO05D004219 2.0e-22 109.4 110 50.0
Lsat_1_v5_gn_1_49860 Lactuca sativa HOM05D003631 ORTHO05D004219 2.0e-22 109.4 110 50.0
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 2.7e-22 109.0 110 49.1
Oeu014652.1 Olea europaea HOM05D003631 ORTHO05D004219 2.7e-22 109.0 110 50.0
Oeu014653.1 Olea europaea HOM05D003631 ORTHO05D004219 2.7e-22 109.0 110 50.0
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 3.5e-22 108.6 110 48.2
GSVIVG01015380001 Vitis vinifera HOM05D003631 ORTHO05D004219 3.5e-22 108.6 111 50.5
CANSAT56G1660 Cannabis sativa HOM05D003631 ORTHO05D004219 4.5e-22 108.2 111 50.5
ECA248G3192 Erigeron canadensis HOM05D003631 ORTHO05D004219 4.5e-22 108.2 110 48.2
PGSC0003DMG400018567 Solanum tuberosum HOM05D003631 ORTHO05D004219 4.5e-22 108.2 110 49.1
Solyc11g071330.3 Solanum lycopersicum HOM05D003631 ORTHO05D004219 5.9e-22 107.8 110 49.1
Sopen11g029010 Solanum pennellii HOM05D003631 ORTHO05D004219 5.9e-22 107.8 110 49.1
ClCG11G002440 Citrullus lanatus HOM05D003631 ORTHO05D004219 7.7e-22 107.5 110 49.1
HanXRQChr01g0029581 Helianthus annuus HOM05D003631 ORTHO05D004219 7.7e-22 107.5 110 48.2
Nn2g11722 Nelumbo nucifera HOM05D003631 ORTHO05D004219 7.7e-22 107.5 110 50.0
arahy.Tifrunner.gnm1.ann1.T1GT7D Arachis hypogaea HOM05D003631 ORTHO05D004219 1.0e-21 107.1 110 49.1
arahy.Tifrunner.gnm1.ann1.YQ2GF9 Arachis hypogaea HOM05D003631 ORTHO05D004219 1.0e-21 107.1 110 49.1
PSO210G6180 Papaver somniferum HOM05D003631 ORTHO05D004219 1.0e-21 107.1 109 49.5
COL.COLO4_34847 Corchorus olitorius HOM05D003631 ORTHO05D004219 1.3e-21 106.7 116 47.4
MBI01_g28041_MAGBIO Magnolia biondii HOM05D003631 ORTHO05D004219 1.3e-21 106.7 113 47.8
Psat6g034240 Pisum sativum HOM05D003631 ORTHO05D004219 1.3e-21 106.7 110 48.2
Aqoxy7G03847 Aquilegia oxysepala HOM05D003631 ORTHO05D004219 1.7e-21 106.3 108 50.0
QL12p026381 Quercus lobata HOM05D003631 ORTHO05D004219 1.7e-21 106.3 130 45.4
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 1.7e-21 106.3 110 47.3
Glyma.14G141500 Glycine max HOM05D003631 ORTHO05D004219 2.2e-21 105.9 110 48.2
Ca_12813_v3 Cicer arietinum L. HOM05D003631 ORTHO05D004219 2.9e-21 105.5 110 48.2
Lj7A707G38 Lonicera japonica HOM05D003631 ORTHO05D004219 2.9e-21 105.5 110 48.2
Oeu012180.1 Olea europaea HOM05D003631 ORTHO05D004219 2.9e-21 105.5 110 46.4
PSO210G4261 Papaver somniferum HOM05D003631 ORTHO05D004219 2.9e-21 105.5 109 49.5
TWI34G0985 Tripterygium wilfordii HOM05D003631 ORTHO05D004219 2.9e-21 105.5 110 49.1
vmacro06223 Vaccinium macrocarpon HOM05D003631 ORTHO05D004219 2.9e-21 105.5 149 41.6
Gorai.009G025400 Gossypium raimondii HOM05D003631 ORTHO05D004219 3.8e-21 105.1 110 48.2
Lj1g0005663 Lotus japonicus HOM05D003631 ORTHO05D004219 3.8e-21 105.1 110 47.3
MELO3C004559.2 Cucumis melo HOM05D003631 ORTHO05D004219 5.0e-21 104.8 110 47.3
CsaV3_2G002230 Cucumis sativus L. HOM05D003631 ORTHO05D004219 5.0e-21 104.8 110 47.3
DCAR_024691 Daucus carota HOM05D003631 ORTHO05D004219 5.0e-21 104.8 110 48.2
Gohir.A06G063200 Gossypium hirsutum HOM05D003631 ORTHO05D004219 5.0e-21 104.8 110 49.1
Thecc.09G108900 Theobroma cacao HOM05D003631 ORTHO05D004219 5.0e-21 104.8 147 41.5
HPP92_000527 Vanilla planifolia HOM05D003631 ORTHO05D004219 5.0e-21 104.8 110 47.3
Medtr1g008350 Medicago truncatula HOM05D003631 ORTHO05D004219 6.5e-21 104.4 110 48.2
Rhsim03G0240900 Rhododendron simsii HOM05D003631 ORTHO05D004219 6.5e-21 104.4 110 50.9
Phvul.001G078701 Phaseolus vulgaris HOM05D003631 ORTHO05D004219 8.5e-21 104.0 110 47.3
DCAR_031967 Daucus carota HOM05D003631 ORTHO05D004219 1.1e-20 103.6 163 38.0
Sed0024476 Sechium edule HOM05D003631 ORTHO05D004219 1.1e-20 103.6 109 48.6
VMungo0647G2237 Vigna mungo HOM05D003631 ORTHO05D004219 1.1e-20 103.6 110 46.4
Ah.16g105220 Amaranthus hybridus HOM05D003631 ORTHO05D004219 1.5e-20 103.2 108 48.1
CiPaw.07G207400 Carya illinoinensis HOM05D003631 ORTHO05D004219 1.5e-20 103.2 110 46.4
FAN28G0644 Fragaria x ananassa HOM05D003631 ORTHO05D004219 1.5e-20 103.2 115 49.6
Gohir.D05G025300 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.5e-20 103.2 110 47.3
TWI63G0861 Tripterygium wilfordii HOM05D003631 ORTHO05D004219 1.5e-20 103.2 110 48.2
Cfa013342 Carpinus fangiana HOM05D003631 ORTHO05D004219 1.9e-20 102.8 108 48.1
AUR62023018 Chenopodium quinoa HOM05D003631 ORTHO05D004219 1.9e-20 102.8 108 47.2
Duzib150G0491 Durio zibethinus HOM05D003631 ORTHO05D004219 1.9e-20 102.8 110 46.4
Lalb_Chr11g0064321 Lupinus albus HOM05D003631 ORTHO05D004219 1.9e-20 102.8 110 48.2
MBI04_g29968_MAGBIO Magnolia biondii HOM05D003631 ORTHO05D004219 2.5e-20 102.4 110 46.4
Phvul.010G165700 Phaseolus vulgaris HOM05D003631 ORTHO05D004219 2.5e-20 102.4 111 46.8
Lsat_1_v5_gn_6_11000 Lactuca sativa HOM05D003631 ORTHO05D004219 3.2e-20 102.1 107 46.7
Lj7A652G70 Lonicera japonica HOM05D003631 ORTHO05D004219 3.2e-20 102.1 110 47.3
Rhsim07G0153300 Rhododendron simsii HOM05D003631 ORTHO05D004219 3.2e-20 102.1 110 46.4
GSVIVG01035673001 Vitis vinifera HOM05D003631 ORTHO05D004219 3.2e-20 102.1 110 46.4
CSS0042874 Camellia sinensis var. sinensis HOM05D003631 ORTHO05D004219 4.2e-20 101.7 116 44.8
Lalb_Chr23g0269431 Lupinus albus HOM05D003631 ORTHO05D004219 4.2e-20 101.7 113 46.0
Eucgr.C02890 Eucalyptus grandis HOM05D003631 ORTHO05D004219 5.5e-20 101.3 110 45.5
HanXRQChr02g0048081 Helianthus annuus HOM05D003631 ORTHO05D004219 5.5e-20 101.3 110 45.5
VMungo0331G0778 Vigna mungo HOM05D003631 ORTHO05D004219 5.5e-20 101.3 111 46.8
Glyma.13G074500 Glycine max HOM05D003631 ORTHO05D004219 7.2e-20 100.9 111 45.9
Thecc.09G039600 Theobroma cacao HOM05D003631 ORTHO05D004219 7.2e-20 100.9 110 46.4
Ca_17334_v3 Cicer arietinum L. HOM05D003631 ORTHO05D004219 9.4e-20 100.5 111 46.8
Gohir.A05G023800 Gossypium hirsutum HOM05D003631 ORTHO05D004219 9.4e-20 100.5 110 47.3
HanXRQChr10g0313001 Helianthus annuus HOM05D003631 ORTHO05D004219 9.4e-20 100.5 110 45.5
Sc08g0007510 Simmondsia chinensis HOM05D003631 ORTHO05D004219 9.4e-20 100.5 117 47.9
SGA_v2.0_scaffold163G38087 Striga asiatica HOM05D003631 ORTHO05D004219 9.4e-20 100.5 110 45.5
MSTRG.1652 Avicennia marina HOM05D003631 ORTHO05D004219 1.2e-19 100.1 110 43.6
Ciclev10009403m.g Citrus clementina HOM05D003631 ORTHO05D004219 1.2e-19 100.1 113 48.7
CiPaw.08G023400 Carya illinoinensis HOM05D003631 ORTHO05D004219 1.6e-19 99.8 149 38.3
Gohir.A08G250900 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.6e-19 99.8 110 45.5
MSTRG.14009 Avicennia marina HOM05D003631 ORTHO05D004219 2.1e-19 99.4 110 44.5
Duzib187G0575 Durio zibethinus HOM05D003631 ORTHO05D004219 2.7e-19 99.0 110 44.5
Migut.E01509 Erythranthe guttata HOM05D003631 ORTHO05D004219 2.7e-19 99.0 110 44.5
COL.COLO4_18699 Corchorus olitorius HOM05D003631 ORTHO05D004219 4.7e-19 98.2 110 44.5
Lalb_Chr09g0331201 Lupinus albus HOM05D003631 ORTHO05D004219 4.7e-19 98.2 111 45.0
Prupe.1G452800 Prunus persica HOM05D003631 ORTHO05D004219 8.0e-19 97.4 110 43.6
Sabra18G0037800 Salix brachista HOM05D003631 ORTHO05D000007 8.0e-19 97.4 108 46.3
Sc09g0009080 Simmondsia chinensis HOM05D003631 ORTHO05D004219 8.0e-19 97.4 110 44.5
vmacro05360 Vaccinium macrocarpon HOM05D003631 ORTHO05D004219 8.0e-19 97.4 107 46.7
arahy.Tifrunner.gnm1.ann1.05GVWZ Arachis hypogaea HOM05D003631 ORTHO05D004219 1.0e-18 97.1 109 45.9
arahy.Tifrunner.gnm1.ann1.AAYU95 Arachis hypogaea HOM05D003631 ORTHO05D004219 1.0e-18 97.1 109 45.9
Lj4g0024734 Lotus japonicus HOM05D003631 ORTHO05D004219 1.0e-18 97.1 111 45.0
Manes.03G062700 Manihot esculenta HOM05D003631 ORTHO05D004219 1.0e-18 97.1 148 37.2
PGR044G0672 Punica granatum HOM05D003631 ORTHO05D004219 1.0e-18 97.1 110 42.7
Peaxi162Scf00231g00034 Petunia axillaris HOM05D003631 ORTHO05D004219 1.8e-18 96.3 114 45.6
EL10Ac2g04076 Beta vulgaris HOM05D003631 ORTHO05D004219 4.0e-18 95.1 102 46.1
Potri.018G037100 Populus trichocarpa HOM05D003631 ORTHO05D004219 5.2e-18 94.7 110 42.7
unitig_578.g16597 Utricularia gibba HOM05D003631 ORTHO05D004219 5.2e-18 94.7 110 42.7
Psat7g013480 Pisum sativum HOM05D003631 ORTHO05D004219 6.8e-18 94.4 109 43.1
SalBow1G6702 Salvia bowleyana HOM05D003631 ORTHO05D004219 6.8e-18 94.4 112 41.1
FvH4_2g36140 Fragaria vesca HOM05D003631 ORTHO05D004219 1.2e-17 93.6 110 43.6
FAN15G1152 Fragaria x ananassa HOM05D003631 ORTHO05D004219 1.2e-17 93.6 110 43.6
FAN20G1208 Fragaria x ananassa HOM05D003631 ORTHO05D004219 1.2e-17 93.6 110 43.6
FAN27G1133 Fragaria x ananassa HOM05D003631 ORTHO05D004219 1.2e-17 93.6 110 43.6
Gohir.D08G272400 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.2e-17 93.6 110 42.7
RcHm_v2.0_Chr6g0305731 Rosa chinensis HOM05D003631 ORTHO05D004219 1.2e-17 93.6 110 43.6
Gorai.004G290800 Gossypium raimondii HOM05D003631 ORTHO05D004219 1.5e-17 93.2 110 43.6
MD15G1098000 Malus domestica HOM05D003631 ORTHO05D004219 1.5e-17 93.2 108 42.6
TPR.G23442 Trifolium pratense HOM05D003631 ORTHO05D004219 2.6e-17 92.4 109 43.1
Medtr8g103490 Medicago truncatula HOM05D003631 ORTHO05D004219 3.4e-17 92.0 109 42.2
SEGI_07691 Sequoiadendron giganteum HOM05D003631 ORTHO05D004219 6.3e-16 87.8 109 46.8
PSO782G4304 Papaver somniferum HOM05D003631 ORTHO05D004219 1.4e-15 86.7 109 41.3
PSO832G3257 Papaver somniferum HOM05D003631 ORTHO05D004219 1.4e-15 86.7 109 41.3
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 3.1e-15 85.5 110 43.6
Os01g0228300 Oryza sativa ssp. japonica HOM05D003631 ORTHO05D004219 5.4e-15 84.7 110 41.8
PSO063G0959 Papaver somniferum HOM05D003631 ORTHO05D004219 1.2e-14 83.6 110 41.8
AUR62009332 Chenopodium quinoa HOM05D003631 ORTHO05D004219 2.7e-14 82.4 84 46.4
SMO301G0049 Selaginella moellendorffii HOM05D003631 ORTHO05D004219 4.5e-14 81.6 107 41.1
Lalb_Chr05g0222891 Lupinus albus HOM05D003631 ORTHO05D004219 5.9e-14 81.3 109 39.4
Mapoly0013s0132 Marchantia polymorpha HOM05D003631 ORTHO05D004219 2.9e-13 79.0 107 41.1
Zm00001eb339190 Zea mays HOM05D003631 ORTHO05D004219 3.8e-13 78.6 110 39.1
SalBow4G1124 Salvia bowleyana HOM05D003631 ORTHO05D004219 8.5e-13 77.4 101 43.6
TPR.G12070 Trifolium pratense HOM05D003631 ORTHO05D004219 8.5e-13 77.4 83 47.0
Glyma.08G038300 Glycine max HOM05D003631 ORTHO05D004219 1.5e-12 76.6 115 40.0
Hund03440 Selenicereus undatus HOM05D003631 ORTHO05D004219 1.9e-12 76.3 119 35.3
AagrBONN_evm.TU.Sc2ySwM_117.3200 Anthoceros agrestis HOM05D003631 ORTHO05D004219 3.2e-12 75.5 110 36.4
ATR0315G107 Amborella trichopoda HOM05D003631 ORTHO05D004219 5.5e-12 74.7 83 45.8
DCAR_003006 Daucus carota HOM05D003631 ORTHO05D004219 1.2e-11 73.6 76 46.1
SMO301G0062 Selaginella moellendorffii HOM05D003631 ORTHO05D004219 8.0e-11 70.9 106 37.7
MD15G1183700 Malus domestica HOM05D003631 ORTHO05D004219 1.8e-10 69.7 39 76.9
CBR_g20451 Chara braunii HOM05D003631 ORTHO05D004219 1.5e-09 66.6 107 34.6
BolC7t45356H Brassica oleracea HOM05D013065 ORTHO05D014530 3.7e-08 62.0 51 60.8
Pp3c2_29560 Physcomitrium patens HOM05D003631 ORTHO05D004219 6.3e-08 61.2 106 33.0
BraA06t24906Z Brassica rapa HOM05D013065 ORTHO05D014530 4.1e-07 58.5 38 78.9
C08p09630 Brassica napus HOM05D013065 ORTHO05D014530 5.4e-07 58.2 68 52.9
Potri.006G242700 Populus trichocarpa HOM05D003631 ORTHO05D004219 7.0e-07 57.8 78 38.5
Gohir.D06G061900 Gossypium hirsutum HOM05D003631 ORTHO05D004219 9.2e-07 57.4 45 60.0
Actinidia15729 Actinidia chinensis HOM05D003631 ORTHO05D004219 1.6e-06 56.6 50 54.0
Nn8g39151 Nelumbo nucifera HOM05D003631 ORTHO05D004219 3.5e-06 55.5 47 53.2
THA.LOC104815150 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 7.7e-06 54.3 77 41.6


User provided reference genes

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