Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 4.5e-89 331.3 171 100.0
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 4.5e-89 331.3 171 100.0
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 7.2e-87 323.9 171 97.7
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 2.7e-86 322.0 171 97.1
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 4.0e-85 318.2 171 94.7
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 2.8e-83 312.0 171 93.0
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 8.3e-83 310.5 171 92.4
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 1.1e-82 310.1 172 93.0
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 9.1e-82 307.0 172 91.9
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-81 306.6 172 94.8
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 1.6e-81 306.2 172 91.3
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 4.5e-81 304.7 175 93.1
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 7.7e-81 303.9 172 93.6
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 3.8e-80 301.6 173 93.6
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 3.8e-80 301.6 173 93.6
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 6.6e-80 300.8 173 93.6
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 5.5e-79 297.7 183 88.5
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 1.3e-75 286.6 174 87.4
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 1.1e-71 273.5 172 87.8
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 1.1e-71 273.5 172 87.8
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 4.0e-69 265.0 141 100.0
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 6.4e-67 257.7 141 97.2
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.5e-63 246.5 173 73.4
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 3.3e-63 245.4 176 73.9
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 2.8e-62 242.3 176 73.3
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 3.6e-62 241.9 176 75.0
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 4.7e-62 241.5 173 75.7
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 4.7e-62 241.5 173 71.7
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 3.1e-61 238.8 171 73.7
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 4.0e-61 238.4 173 72.8
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.2e-60 236.9 171 72.5
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 4.4e-60 235.0 177 72.9
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 5.8e-60 234.6 177 72.3
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 5.8e-60 234.6 176 73.3
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.7e-59 233.0 180 72.2
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.7e-59 233.0 176 71.0
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.7e-59 233.0 171 71.9
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 2.2e-59 232.6 173 70.5
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 4.9e-59 231.5 177 71.2
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 6.4e-59 231.1 174 71.8
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 8.3e-59 230.7 171 70.8
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 8.3e-59 230.7 174 68.4
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 8.3e-59 230.7 176 72.7
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 1.4e-58 229.9 171 70.2
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 1.4e-58 229.9 173 69.4
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 2.4e-58 229.2 172 71.5
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 2.4e-58 229.2 172 70.3
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 3.2e-58 228.8 174 69.0
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 3.2e-58 228.8 176 68.8
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 5.4e-58 228.0 173 68.2
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 5.4e-58 228.0 174 68.4
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 5.4e-58 228.0 175 70.9
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 5.4e-58 228.0 184 70.1
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 7.1e-58 227.6 175 70.3
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 7.1e-58 227.6 175 71.4
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 1.2e-57 226.9 173 67.6
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 1.6e-57 226.5 176 70.5
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 2.7e-57 225.7 176 67.6
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 2.7e-57 225.7 171 66.7
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 2.7e-57 225.7 171 66.7
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 3.5e-57 225.3 174 70.7
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 3.5e-57 225.3 175 68.6
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 4.6e-57 224.9 177 71.2
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 1.0e-56 223.8 173 66.5
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.3e-56 223.4 179 69.3
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 2.3e-56 222.6 172 70.9
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 3.0e-56 222.2 171 68.4
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 3.0e-56 222.2 179 66.5
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 3.0e-56 222.2 172 70.9
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 6.6e-56 221.1 175 69.1
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 8.6e-56 220.7 171 66.1
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.5e-55 219.9 174 66.1
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 1.5e-55 219.9 174 66.1
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 3.3e-55 218.8 174 68.4
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 5.6e-55 218.0 171 67.8
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 7.3e-55 217.6 182 65.9
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 9.5e-55 217.2 172 68.0
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 1.2e-54 216.9 171 65.5
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.2e-54 216.9 173 68.2
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 1.6e-54 216.5 172 66.3
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 2.1e-54 216.1 175 68.6
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 2.1e-54 216.1 176 67.6
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 2.8e-54 215.7 174 66.1
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 2.8e-54 215.7 171 67.3
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 2.8e-54 215.7 173 65.3
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 8.1e-54 214.2 176 68.2
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 1.1e-53 213.8 176 68.2
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.4e-53 213.4 177 66.1
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 1.8e-53 213.0 171 66.7
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 5.2e-53 211.5 171 67.8
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 6.8e-53 211.1 174 66.1
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 2.0e-52 209.5 176 65.3
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.0e-52 209.5 177 63.8
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.0e-52 209.5 177 63.8
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 4.4e-52 208.4 174 65.5
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 5.8e-52 208.0 175 63.4
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 9.9e-52 207.2 173 65.9
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.3e-51 206.8 171 65.5
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.3e-51 206.8 171 65.5
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.3e-51 206.8 149 69.8
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 2.9e-51 205.7 172 64.5
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 1.1e-50 203.8 176 64.2
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 1.4e-50 203.4 178 62.4
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.9e-50 203.0 169 64.5
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.9e-50 203.0 174 62.1
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 3.2e-50 202.2 171 64.9
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 4.1e-50 201.8 174 64.4
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 7.1e-50 201.1 171 62.0
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 9.2e-50 200.7 172 64.0
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 2.7e-49 199.1 171 64.9
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 6.0e-49 198.0 179 62.6
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 1.3e-48 196.8 171 61.4
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 1.3e-48 196.8 173 61.8
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.5e-47 193.4 171 60.2
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 2.1e-46 189.5 127 74.0
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 1.1e-45 187.2 171 58.5
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 1.1e-45 187.2 178 60.1
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 2.6e-44 182.6 111 79.3
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 5.8e-44 181.4 111 77.5
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 1.9e-42 176.4 110 78.2
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 3.5e-41 172.2 147 70.1
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 2.5e-39 166.0 147 63.3
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 2.8e-38 162.5 145 65.5
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 3.6e-38 162.2 116 86.2
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 1.5e-36 156.8 125 60.0
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 2.6e-36 156.0 133 65.4
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 5.8e-36 154.8 142 61.3
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 2.4e-34 149.4 101 89.1
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 3.3e-31 139.0 82 74.4
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 1.6e-30 136.7 74 89.2
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 3.6e-30 135.6 74 87.8
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 4.8e-30 135.2 72 90.3
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 1.8e-29 133.3 74 86.5
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 1.7e-27 126.7 130 64.6
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 1.3e-24 117.1 113 55.8
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 5.1e-24 115.2 171 46.8
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 2.4e-21 106.3 74 71.6
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 1.2e-20 104.0 109 52.3
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 1.1e-18 97.4 92 56.5
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 8.7e-16 87.8 137 40.1
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 4.3e-15 85.5 87 52.9
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 5.7e-15 85.1 110 50.0
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 1.3e-14 84.0 88 51.1
BcaB04g20368 Brassica carinata HOM05D005188 ORTHO05D006153 3.7e-14 82.4 80 67.5
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.4e-13 80.5 102 50.0
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 2.9e-11 72.8 110 49.1
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 1.3e-08 63.9 30 90.0
BcaB07g32714 Brassica carinata HOM05D004025 ORTHO05D019855 8.2e-06 54.7 40 75.0


User provided reference genes

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