Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 1.4e-282 975.7 516 100.0
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 3.4e-281 971.1 516 99.6
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 4.4e-281 970.7 518 99.6
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 1.9e-260 902.1 521 93.7
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 4.3e-260 901.0 534 91.9
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 1.5e-236 822.8 515 87.8
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 9.7e-236 820.1 519 86.9
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 2.7e-230 802.0 520 85.2
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 4.2e-215 751.5 513 81.1
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 1.6e-214 749.6 517 80.7
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 2.1e-214 749.2 517 80.7
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 6.1e-214 747.7 517 80.5
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 8.8e-213 743.8 502 82.1
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 7.5e-212 740.7 509 80.9
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 4.1e-210 734.9 488 81.8
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.6e-209 733.0 516 79.3
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 2.0e-201 706.1 519 77.1
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 2.6e-188 662.5 518 71.4
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.3e-144 516.5 509 60.5
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.3e-134 484.2 522 57.1
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.2e-121 441.0 551 51.5
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 4.5e-116 422.5 544 50.6
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 4.7e-113 412.5 544 49.6
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 1.0e-112 411.4 546 49.8
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.8e-112 410.6 557 48.7
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 5.2e-112 409.1 555 49.4
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.1e-111 407.9 545 48.3
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 2.6e-111 406.8 556 48.0
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 9.7e-111 404.8 515 50.7
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 1.4e-109 401.0 551 50.1
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.8e-109 400.6 523 47.6
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 4.1e-109 399.4 522 49.0
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 5.3e-109 399.1 527 48.4
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 7.0e-109 398.7 553 49.5
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.3e-107 394.4 544 47.6
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 3.8e-107 392.9 564 47.9
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 1.1e-106 391.3 564 48.0
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.5e-106 391.0 555 48.1
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 1.2e-105 387.9 551 47.2
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 2.7e-105 386.7 545 47.3
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 6.1e-105 385.6 513 49.1
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 6.1e-105 385.6 567 48.1
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 1.4e-104 384.4 498 48.8
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 2.3e-104 383.6 535 47.9
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 4.0e-104 382.9 521 48.2
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 2.0e-103 380.6 548 48.0
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 5.7e-103 379.0 548 47.1
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 5.7e-103 379.0 552 46.9
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.3e-102 377.9 534 47.2
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 2.8e-102 376.7 541 47.3
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 4.8e-102 375.9 553 46.5
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 6.3e-102 375.6 574 46.0
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 6.3e-102 375.6 553 46.1
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.4e-101 374.4 518 48.1
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 2.4e-101 373.6 526 46.0
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.4e-101 373.6 525 46.1
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.1e-101 373.2 526 46.0
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.1e-101 372.9 525 45.9
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 5.3e-101 372.5 548 46.9
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 7.7e-100 368.6 526 49.0
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 7.7e-100 368.6 518 47.1
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.3e-99 367.9 526 45.4
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.7e-99 367.5 555 45.4
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.7e-99 367.5 497 47.9
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.2e-99 367.1 503 48.3
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 5.0e-99 365.9 552 47.6
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 5.0e-99 365.9 509 47.2
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 8.5e-99 365.2 541 46.4
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.5e-98 364.4 499 47.3
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.9e-98 364.0 547 46.1
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.0e-96 358.2 551 45.9
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 1.0e-96 358.2 548 45.6
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 6.8e-96 355.5 498 46.0
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 8.8e-96 355.1 535 43.6
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.5e-95 354.4 550 44.5
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 2.0e-95 354.0 527 46.5
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 3.4e-95 353.2 500 47.2
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.7e-94 350.9 526 45.4
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 2.8e-94 350.1 505 47.3
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 4.1e-93 346.3 533 45.6
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 4.1e-93 346.3 526 44.3
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.6e-92 344.4 553 44.5
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 5.9e-92 342.4 528 45.3
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 2.9e-91 340.1 515 45.2
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 3.8e-91 339.7 636 42.0
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 8.6e-91 338.6 523 43.4
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 1.5e-90 337.8 411 51.3
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 7.2e-90 335.5 537 44.7
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 1.6e-89 334.3 522 44.4
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.0e-89 332.0 504 45.0
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.8e-88 330.9 555 43.8
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 2.3e-88 330.5 561 43.0
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 4.0e-88 329.7 543 43.5
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 1.5e-87 327.8 489 46.6
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.0e-87 327.4 525 42.9
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 2.6e-87 327.0 549 43.9
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 4.4e-87 326.2 537 43.0
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 5.7e-87 325.9 529 43.9
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 9.8e-87 325.1 516 43.2
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.2e-86 323.9 551 41.6
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.1e-85 321.6 511 42.3
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 2.3e-83 313.9 538 42.8
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 5.0e-83 312.8 533 44.1
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 6.6e-83 312.4 527 42.1
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 5.6e-82 309.3 574 42.2
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.6e-81 307.8 388 49.0
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 4.7e-81 306.2 546 41.8
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 8.0e-81 305.4 535 41.9
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 3.1e-80 303.5 379 49.3
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 4.0e-80 303.1 523 42.1
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 3.4e-79 300.1 520 42.7
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 9.8e-79 298.5 544 41.4
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 8.3e-78 295.4 512 44.3
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 3.0e-75 287.0 487 42.7
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 3.0e-75 287.0 388 49.2
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.1e-74 285.0 542 39.5
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.5e-74 283.9 508 40.7
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 3.3e-74 283.5 563 40.5
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 4.3e-74 283.1 549 42.4
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 5.6e-74 282.7 522 42.5
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 4.7e-73 279.6 420 46.2
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.2e-71 275.0 396 46.2
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.5e-71 274.6 529 41.4
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 2.0e-71 274.2 528 40.3
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 7.5e-71 272.3 534 41.2
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 9.8e-71 271.9 558 40.3
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.9e-70 270.4 506 39.3
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 3.2e-69 266.9 490 42.4
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.3e-67 260.8 529 39.3
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 3.9e-67 260.0 507 38.1
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.5e-66 258.1 438 40.2
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 3.1e-64 250.4 503 38.8
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.1e-64 250.4 520 36.7
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 6.8e-64 249.2 411 43.3
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 7.5e-63 245.7 517 37.1
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 9.5e-58 228.8 366 40.7
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 6.8e-56 222.6 377 42.4
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 2.4e-53 214.2 380 40.0
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 9.2e-53 212.2 327 45.3
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 6.0e-52 209.5 258 51.2
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.6e-50 203.0 369 38.5
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.1e-48 197.2 369 38.5
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 5.3e-48 196.4 477 35.4
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 4.4e-47 193.4 369 38.2
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 8.4e-46 189.1 470 34.7
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 5.4e-45 186.4 332 40.4
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.5e-42 177.6 471 34.6
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 9.0e-40 169.1 295 42.4
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 5.8e-39 166.4 519 32.4
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.2e-36 158.7 415 33.5
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 1.3e-33 148.7 496 31.2
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 2.1e-33 147.9 205 48.8
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 1.8e-32 144.8 245 44.1
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.6e-31 141.0 214 43.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 7.9e-28 129.4 186 47.8
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.0e-27 127.5 249 36.1
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 5.1e-27 126.7 309 34.0
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 4.3e-26 123.6 206 41.3
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 6.2e-25 119.8 303 32.0
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 3.1e-24 117.5 206 38.8
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 2.6e-23 114.4 236 39.0
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.0e-22 112.5 170 48.8
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.1e-21 109.0 125 52.8
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.4e-21 108.6 109 54.1
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-20 105.1 276 35.1
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 2.1e-20 104.8 146 43.8
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 9.7e-18 95.9 128 46.1
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.1e-16 90.9 273 33.0
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 1.2e-15 89.0 67 62.7
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.1e-10 72.4 120 42.5
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.5e-10 72.0 67 58.2
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 2.0e-10 71.6 94 38.3
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 9.7e-10 69.3 66 54.5
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 1.4e-08 65.5 53 58.5
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 2.0e-07 61.6 86 44.2
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 1.3e-06 58.9 410 22.7
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 1.7e-06 58.5 274 28.8


User provided reference genes

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