Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02521 Brassica carinata HOM05D001111 ORTHO05D000939 1.5e-96 356.3 190 100.0
BcaC01g02520 Brassica carinata HOM05D001111 ORTHO05D000939 3.2e-91 338.6 180 100.0
C03p63950 Brassica napus HOM05D001111 ORTHO05D000939 3.2e-91 338.6 180 100.0
BolC3t18649H Brassica oleracea HOM05D001111 ORTHO05D000939 3.2e-91 338.6 180 100.0
Thhalv10005715m.g Eutrema salsugineum HOM05D001111 ORTHO05D000939 1.5e-64 250.0 192 74.5
Sp2g25940 Schrenkiella parvula HOM05D001111 ORTHO05D000939 1.1e-59 233.8 192 73.4
A06p29550 Brassica napus HOM05D001111 ORTHO05D000939 5.4e-59 231.5 181 71.8
BraA06t25901Z Brassica rapa HOM05D001111 ORTHO05D000939 5.4e-59 231.5 181 71.8
AT5G62770 Arabidopsis thaliana HOM05D001111 ORTHO05D000939 1.5e-56 223.4 185 70.8
AL8G39740 Arabidopsis lyrata HOM05D001111 ORTHO05D000939 7.3e-56 221.1 186 71.0
BcaC04g23394 Brassica carinata HOM05D001111 ORTHO05D000939 1.8e-54 216.5 180 68.9
C09p08840 Brassica napus HOM05D001111 ORTHO05D000939 9.0e-54 214.2 180 68.3
BolC9t53796H Brassica oleracea HOM05D001111 ORTHO05D000939 4.4e-53 211.8 180 67.8
Carub.0008s2350 Capsella rubella HOM05D001111 ORTHO05D000939 9.9e-53 210.7 185 68.1
BraA09t36435Z Brassica rapa HOM05D001111 ORTHO05D000939 1.1e-51 207.2 180 67.8
A09p07840 Brassica napus HOM05D001111 ORTHO05D000939 3.2e-51 205.7 182 67.0
BcaB02g09692 Brassica carinata HOM05D001111 ORTHO05D000939 9.3e-51 204.1 182 69.2
CARHR276560 Cardamine hirsuta HOM05D001111 ORTHO05D000939 1.7e-49 199.9 188 64.4
Aa31LG11G910 Aethionema arabicum HOM05D001111 ORTHO05D000939 1.9e-48 196.4 188 66.0
BcaNung01382 Brassica carinata HOM05D001111 ORTHO05D000939 1.5e-45 186.8 187 63.6
THA.LOC104818236 Tarenaya hassleriana HOM05D001111 ORTHO05D000939 1.5e-40 170.2 189 59.3
THA.LOC104821458 Tarenaya hassleriana HOM05D001111 ORTHO05D000939 3.1e-38 162.5 190 53.2
Cpa.g.sc76.61 Carica papaya HOM05D001111 ORTHO05D000939 4.5e-21 105.5 201 42.3
Duzib205G1255 Durio zibethinus HOM05D001111 ORTHO05D000939 3.6e-18 95.9 174 44.3
Thecc.03G012600 Theobroma cacao HOM05D001111 ORTHO05D000939 4.6e-18 95.5 188 47.9
Duzib068G0287 Durio zibethinus HOM05D001111 ORTHO05D000939 2.3e-17 93.2 186 41.4
Lj9P449T21 Lonicera japonica HOM05D001111 ORTHO05D000939 3.3e-16 89.4 189 40.2
COL.COLO4_30037 Corchorus olitorius HOM05D001111 ORTHO05D000939 9.7e-16 87.8 187 43.9
Dinv02893 Davidia involucrata HOM05D001111 ORTHO05D000939 2.2e-15 86.7 205 39.0
Migut.I00012 Erythranthe guttata HOM05D001111 ORTHO05D000939 6.3e-15 85.1 203 41.9
Sed0001479 Sechium edule HOM05D001111 ORTHO05D000939 1.1e-14 84.3 196 37.8
CSS0041124 Camellia sinensis var. sinensis HOM05D001111 ORTHO05D000939 5.3e-14 82.0 211 39.3
TWI23G0219 Tripterygium wilfordii HOM05D001111 ORTHO05D000939 6.9e-14 81.6 180 40.0
Oeu040830.1 Olea europaea HOM05D001111 ORTHO05D000939 1.2e-13 80.9 179 43.0
Oeu040831.1 Olea europaea HOM05D001111 ORTHO05D000939 1.2e-13 80.9 179 43.0
Rhsim08G0172000 Rhododendron simsii HOM05D001111 ORTHO05D000939 1.2e-13 80.9 212 38.7
Actinidia33068 Actinidia chinensis HOM05D001111 ORTHO05D000939 1.5e-13 80.5 208 38.9
Manes.14G065800 Manihot esculenta HOM05D001111 ORTHO05D000939 2.6e-13 79.7 201 37.8
Eucgr.K02843 Eucalyptus grandis HOM05D001111 ORTHO05D000939 3.4e-13 79.3 191 38.2
Phvul.009G178600 Phaseolus vulgaris HOM05D001111 ORTHO05D000939 4.5e-13 79.0 190 37.4
Glyma.04G183300 Glycine max HOM05D001111 ORTHO05D000939 5.9e-13 78.6 206 37.4
Manes.06G104800 Manihot esculenta HOM05D001111 ORTHO05D000939 7.7e-13 78.2 199 36.2
Lalb_Chr23g0273221 Lupinus albus HOM05D001111 ORTHO05D000939 2.9e-12 76.3 166 37.3
TAR371G1086 Trochodendron aralioides HOM05D001111 ORTHO05D000939 3.8e-12 75.9 171 42.7
FAN04G3199 Fragaria x ananassa HOM05D001111 ORTHO05D000939 1.4e-11 73.9 188 38.3
MD14G1180400 Malus domestica HOM05D001111 ORTHO05D000939 1.4e-11 73.9 189 38.1
Cfa019132 Carpinus fangiana HOM05D001111 ORTHO05D000939 1.9e-11 73.6 174 42.5
Cc04_g14080 Coffea canephora HOM05D001111 ORTHO05D000939 1.9e-11 73.6 191 42.4
Oeu022162.1 Olea europaea HOM05D001111 ORTHO05D000939 2.5e-11 73.2 194 37.1
TWI31G0459 Tripterygium wilfordii HOM05D001111 ORTHO05D000939 2.5e-11 73.2 197 35.5
TAR629G2362 Trochodendron aralioides HOM05D001111 ORTHO05D000939 2.5e-11 73.2 198 37.9
CsaV3_1G008460 Cucumis sativus L. HOM05D001111 ORTHO05D000939 3.2e-11 72.8 226 35.0
TWI39G0739 Tripterygium wilfordii HOM05D001111 ORTHO05D000939 4.2e-11 72.4 197 39.1
VMungo1309G2238 Vigna mungo HOM05D001111 ORTHO05D000939 5.5e-11 72.0 197 38.6
FvH4_5g05310 Fragaria vesca HOM05D001111 ORTHO05D000939 7.2e-11 71.6 191 41.4
FAN18G1119 Fragaria x ananassa HOM05D001111 ORTHO05D000939 7.2e-11 71.6 191 41.4
Sc04g0001810 Simmondsia chinensis HOM05D001111 ORTHO05D000939 7.2e-11 71.6 126 45.2
FAN08G1819 Fragaria x ananassa HOM05D001111 ORTHO05D000939 9.4e-11 71.2 189 38.6
MELO3C002262.2 Cucumis melo HOM05D001111 ORTHO05D000939 1.2e-10 70.9 222 34.7
FAN13G1071 Fragaria x ananassa HOM05D001111 ORTHO05D000939 1.2e-10 70.9 187 39.0
CiPaw.12G026500 Carya illinoinensis HOM05D001111 ORTHO05D000939 1.6e-10 70.5 225 33.3
FAN18G2882 Fragaria x ananassa HOM05D001111 ORTHO05D000939 1.6e-10 70.5 190 40.0
Potri.012G081000 Populus trichocarpa HOM05D001111 ORTHO05D000939 1.6e-10 70.5 214 37.9
ClCG01G013130 Citrullus lanatus HOM05D001111 ORTHO05D000939 2.1e-10 70.1 221 34.8
Sed0027867 Sechium edule HOM05D001111 ORTHO05D000939 3.6e-10 69.3 211 36.5
Atru.chr9.2477 Acer truncatum HOM05D001111 ORTHO05D000939 4.7e-10 68.9 220 35.0
RcHm_v2.0_Chr7g0193551 Rosa chinensis HOM05D001111 ORTHO05D000939 4.7e-10 68.9 201 34.8
Lj1g0001599 Lotus japonicus HOM05D001111 ORTHO05D000939 1.0e-09 67.8 190 36.3
TAR622G0132 Trochodendron aralioides HOM05D001111 ORTHO05D000939 1.0e-09 67.8 161 43.5
SalBow5G0542 Salvia bowleyana HOM05D001111 ORTHO05D000939 1.4e-09 67.4 231 34.2
Ca_16179_v3 Cicer arietinum L. HOM05D001111 ORTHO05D000939 1.8e-09 67.0 166 39.2
Ca_16180_v3 Cicer arietinum L. HOM05D001111 ORTHO05D000939 1.8e-09 67.0 166 39.2
MBI16_g32208_MAGBIO Magnolia biondii HOM05D001111 ORTHO05D000939 1.8e-09 67.0 200 36.5
Oeu060136.1 Olea europaea HOM05D001111 ORTHO05D000939 1.8e-09 67.0 203 36.5
SalBow5G1950 Salvia bowleyana HOM05D001111 ORTHO05D000939 3.0e-09 66.2 231 34.2
Prupe.5G173800 Prunus persica HOM05D001111 ORTHO05D000939 5.1e-09 65.5 216 36.6
QL02p076295 Quercus lobata HOM05D001111 ORTHO05D000939 5.1e-09 65.5 170 34.7
Ciclev10021025m.g Citrus clementina HOM05D001111 ORTHO05D000939 6.7e-09 65.1 232 37.5
CsaV3_1G001490 Cucumis sativus L. HOM05D001111 ORTHO05D000939 6.7e-09 65.1 180 37.8
PGSC0003DMG400045223 Solanum tuberosum HOM05D001111 ORTHO05D000939 6.7e-09 65.1 195 34.9
MSTRG.4373 Avicennia marina HOM05D001111 ORTHO05D000939 8.8e-09 64.7 211 35.5
Dinv00507 Davidia involucrata HOM05D001111 ORTHO05D000939 8.8e-09 64.7 159 39.6
Sed0020184 Sechium edule HOM05D001111 ORTHO05D000939 8.8e-09 64.7 172 34.3
CDE06G1645 Ceratophyllum demersum HOM05D000875 ORTHO05D000939 1.1e-08 64.3 185 36.8
Lsat_1_v5_gn_5_14521 Lactuca sativa HOM05D001111 ORTHO05D000939 1.1e-08 64.3 214 35.0
CDE06G0264 Ceratophyllum demersum HOM05D001111 ORTHO05D000939 1.5e-08 63.9 166 36.7
Medtr3g077890 Medicago truncatula HOM05D001111 ORTHO05D000939 1.5e-08 63.9 199 38.2
HPP92_023402 Vanilla planifolia HOM05D001111 ORTHO05D000939 1.5e-08 63.9 137 37.2
Ah.02g110500 Amaranthus hybridus HOM05D001111 ORTHO05D000939 2.0e-08 63.5 192 34.4
Nitab4.5_0007719g0040 Nicotiana tabacum HOM05D001111 ORTHO05D000939 2.0e-08 63.5 198 38.9
Sabra15G0101500 Salix brachista HOM05D001111 ORTHO05D000939 2.0e-08 63.5 201 33.8
MSTRG.23129 Avicennia marina HOM05D001111 ORTHO05D000939 2.6e-08 63.2 237 32.5
HanXRQChr05g0156231 Helianthus annuus HOM05D001111 ORTHO05D000939 2.6e-08 63.2 200 38.0
Hma1.2p1_0176F.1_g077400 Hydrangea macrophylla HOM05D001111 ORTHO05D000939 2.6e-08 63.2 185 40.0
Nn4g22768 Nelumbo nucifera HOM05D001111 ORTHO05D000939 3.3e-08 62.8 181 35.4
Solyc03g114350.1 Solanum lycopersicum HOM05D001111 ORTHO05D000939 3.3e-08 62.8 194 39.2
CDE07G0471 Ceratophyllum demersum HOM05D001111 ORTHO05D000939 4.4e-08 62.4 166 37.3
CiPaw.11G026300 Carya illinoinensis HOM05D001111 ORTHO05D000939 5.7e-08 62.0 192 39.1
Haze_07471 Corylus avellana HOM05D001111 ORTHO05D000939 5.7e-08 62.0 182 39.0
ClCG06G017020 Citrullus lanatus HOM05D001111 ORTHO05D000939 7.4e-08 61.6 203 33.5
PGR083G0859 Punica granatum HOM05D001111 ORTHO05D000939 7.4e-08 61.6 124 44.4
SalBow2G0497 Salvia bowleyana HOM05D001111 ORTHO05D000939 7.4e-08 61.6 213 37.1
Dinv35071 Davidia involucrata HOM05D005823 ORTHO05D007536 9.7e-08 61.2 159 39.0
Potri.015G076400 Populus trichocarpa HOM05D001111 ORTHO05D000939 9.7e-08 61.2 208 33.7
Lj5P124T59 Lonicera japonica HOM05D001111 ORTHO05D000939 1.3e-07 60.8 115 41.7
Sabra12G0057900 Salix brachista HOM05D001111 ORTHO05D000939 1.3e-07 60.8 214 32.7
CAN.G781.10 Capsicum annuum HOM05D001111 ORTHO05D000939 1.7e-07 60.5 201 37.8
Ca_21918_v3 Cicer arietinum L. HOM05D001111 ORTHO05D000939 1.7e-07 60.5 148 36.5
Nitab4.5_0001017g0090 Nicotiana tabacum HOM05D001111 ORTHO05D000939 1.7e-07 60.5 213 31.9
Glyma.06G182500 Glycine max HOM05D001111 ORTHO05D000939 2.2e-07 60.1 214 36.4
unitig_750.g28471 Utricularia gibba HOM05D001111 ORTHO05D000939 4.8e-07 58.9 198 33.8
VMungo1215G2839 Vigna mungo HOM05D001111 ORTHO05D000939 4.8e-07 58.9 179 35.2
MELO3C026293.2 Cucumis melo HOM05D001111 ORTHO05D000939 6.3e-07 58.5 206 34.5
Psat4g058040 Pisum sativum HOM05D001111 ORTHO05D000939 6.3e-07 58.5 184 35.3
Sopen03g033450 Solanum pennellii HOM05D001111 ORTHO05D000939 6.3e-07 58.5 192 38.5
MSTRG.11451 Avicennia marina HOM05D001111 ORTHO05D000939 8.2e-07 58.2 221 32.6
Nitab4.5_0009783g0040 Nicotiana tabacum HOM05D001111 ORTHO05D000939 1.4e-06 57.4 204 34.3
Phvul.003G200400 Phaseolus vulgaris HOM05D001111 ORTHO05D000939 1.8e-06 57.0 151 37.7
Dinv20655 Davidia involucrata HOM05D001111 ORTHO05D000939 2.4e-06 56.6 203 36.0
CAN.G628.80 Capsicum annuum HOM05D001111 ORTHO05D000939 4.1e-06 55.8 174 39.1
Glyma.17G089500 Glycine max HOM05D001111 ORTHO05D000939 4.1e-06 55.8 122 39.3
SGA_v2.0_scaffold90G27938 Striga asiatica HOM05D001111 ORTHO05D000939 5.3e-06 55.5 211 31.3
CiPaw.03G039000 Carya illinoinensis HOM05D001111 ORTHO05D000939 7.0e-06 55.1 179 34.6
ECA246G3140 Erigeron canadensis HOM05D001111 ORTHO05D000939 9.1e-06 54.7 212 31.6


User provided reference genes

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