Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 0.0e+00 1184.9 638 100.0
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 0.0e+00 1142.9 624 99.2
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 0.0e+00 1132.9 651 95.4
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 2.6e-283 978.4 620 86.0
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 3.2e-281 971.5 664 78.6
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 5.5e-281 970.7 666 79.3
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 1.6e-280 969.1 646 83.0
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 5.9e-275 950.7 637 80.7
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 1.3e-250 869.8 657 74.1
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 2.3e-247 859.0 655 73.6
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 1.2e-246 856.7 651 72.8
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 7.3e-241 837.4 646 75.4
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 2.0e-206 723.0 696 63.1
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 1.7e-202 709.9 671 58.6
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 1.1e-143 514.6 801 44.1
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 1.1e-135 488.0 675 46.8
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 3.1e-135 486.5 692 46.4
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 9.5e-132 474.9 751 42.2
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 6.8e-130 468.8 674 50.7
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 1.7e-128 464.2 684 46.5
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 8.3e-128 461.8 419 61.6
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 2.4e-127 460.3 410 62.7
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 7.0e-127 458.8 754 42.4
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 2.7e-126 456.8 727 45.1
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 3.5e-126 456.4 421 60.6
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 4.5e-126 456.1 723 43.4
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 1.7e-125 454.1 420 61.4
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 1.7e-125 454.1 703 44.5
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.1e-124 451.4 749 44.6
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.5e-124 451.1 679 46.5
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 7.3e-124 448.7 753 43.7
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 1.6e-123 447.6 690 43.6
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 2.8e-123 446.8 443 56.2
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 2.8e-123 446.8 441 57.8
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 3.6e-123 446.4 395 60.8
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 6.1e-123 445.7 434 57.8
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 1.4e-122 444.5 729 42.8
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 1.8e-122 444.1 694 43.9
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 2.3e-122 443.7 712 42.6
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 2.3e-122 443.7 652 45.6
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 2.3e-122 443.7 766 44.1
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.6e-121 440.3 722 42.1
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 2.6e-121 440.3 421 58.4
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 5.8e-121 439.1 756 40.7
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 5.8e-121 439.1 433 56.4
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 7.5e-121 438.7 673 45.5
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 1.7e-120 437.6 430 56.5
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 2.2e-120 437.2 433 57.5
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 2.2e-120 437.2 434 58.3
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 2.9e-120 436.8 749 45.9
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 3.7e-120 436.4 386 61.7
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 8.3e-120 435.3 389 60.4
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 1.4e-119 434.5 449 54.8
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 4.1e-119 433.0 410 59.3
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 4.1e-119 433.0 439 54.9
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 7.0e-119 432.2 410 57.6
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 1.2e-118 431.4 391 59.8
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 2.0e-118 430.6 611 45.8
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.7e-118 430.3 703 43.1
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 4.6e-118 429.5 410 57.8
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 7.8e-118 428.7 401 58.9
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 1.0e-117 428.3 603 49.8
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 1.3e-117 427.9 407 58.0
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 1.7e-117 427.6 753 38.8
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 3.9e-117 426.4 446 54.9
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 5.0e-117 426.0 387 59.9
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 6.6e-117 425.6 412 57.3
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 8.6e-117 425.2 385 59.5
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.5e-116 424.5 407 58.5
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 1.2e-115 421.4 387 60.7
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 1.2e-115 421.4 418 56.5
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 1.6e-115 421.0 434 56.7
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 2.8e-115 420.2 739 44.1
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 1.5e-113 414.5 661 45.4
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 2.0e-113 414.1 652 42.6
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 5.8e-113 412.5 451 54.5
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.7e-112 411.0 634 42.9
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 1.7e-112 411.0 455 54.3
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 8.3e-112 408.7 443 53.7
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 2.4e-111 407.1 435 55.6
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 1.2e-110 404.8 467 51.8
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 2.1e-110 404.1 811 38.2
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 2.7e-110 403.7 443 53.7
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 2.5e-108 397.1 406 54.9
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 2.8e-107 393.7 396 56.8
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 4.0e-106 389.8 412 54.4
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 4.4e-105 386.3 389 55.8
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 9.9e-105 385.2 966 32.8
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 4.9e-104 382.9 412 54.6
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 1.4e-103 381.3 412 53.2
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 2.4e-103 380.6 398 55.0
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 3.2e-103 380.2 402 54.2
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 7.1e-103 379.0 736 38.9
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 8.6e-101 372.1 413 53.8
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 5.6e-100 369.4 425 51.3
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 4.7e-99 366.3 383 55.6
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 6.0e-94 349.4 411 51.1
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 3.9e-93 346.7 424 48.8
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 1.1e-92 345.1 507 50.5
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 6.4e-88 329.3 307 57.3
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.3e-85 321.6 232 70.3
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 3.9e-69 266.9 491 39.3
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 2.9e-64 250.8 754 32.5
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 1.5e-60 238.4 154 76.0
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 5.3e-58 229.9 270 53.0
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 3.2e-39 167.5 198 44.9
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 2.0e-36 158.3 128 64.1
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 7.0e-34 149.8 186 46.8
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 4.5e-25 120.6 100 61.0
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 1.9e-15 88.6 81 59.3
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 9.8e-12 76.3 72 56.9
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 9.2e-10 69.7 71 53.5
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 5.9e-09 67.0 137 42.3


User provided reference genes

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