Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 3.8e-140 501.5 258 100.0
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 9.4e-139 496.9 255 100.0
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 7.7e-133 477.2 255 96.1
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 6.8e-129 464.2 241 98.8
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 5.9e-125 451.1 241 96.3
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 3.2e-123 445.3 255 89.4
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 4.0e-113 411.8 241 88.0
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 1.1e-110 403.7 256 83.2
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 2.9e-108 395.6 255 81.6
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 7.3e-107 391.0 255 80.0
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 1.6e-106 389.8 255 79.2
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 3.1e-105 385.6 255 79.2
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 3.1e-105 385.6 255 79.2
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 2.6e-104 382.5 243 82.7
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 2.7e-101 372.5 255 79.2
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 6.0e-101 371.3 255 78.4
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 7.3e-99 364.4 255 78.8
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 4.0e-97 358.6 255 76.5
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 2.1e-90 336.3 259 70.7
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 2.0e-88 329.7 221 79.6
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 2.9e-79 299.3 260 65.0
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 2.4e-78 296.2 259 63.3
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 4.2e-78 295.4 262 63.4
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 5.4e-78 295.0 262 63.4
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 9.3e-78 294.3 262 62.6
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 3.5e-77 292.4 262 62.2
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 2.3e-76 289.7 257 61.9
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 3.0e-76 289.3 262 61.5
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 3.9e-76 288.9 261 63.2
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 5.1e-76 288.5 262 61.5
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.1e-75 287.3 260 62.3
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 4.3e-75 285.4 261 62.1
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 9.6e-75 284.3 261 62.1
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 4.9e-71 271.9 188 69.1
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 8.4e-71 271.2 188 69.1
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 5.4e-70 268.5 187 68.4
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 9.3e-70 267.7 188 68.1
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 1.2e-69 267.3 188 67.6
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 1.3e-68 263.8 211 63.5
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 1.7e-68 263.5 196 67.3
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 2.3e-68 263.1 191 68.1
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 3.0e-68 262.7 204 66.2
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 3.0e-68 262.7 212 61.8
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 3.9e-68 262.3 190 67.9
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 5.1e-68 261.9 188 68.1
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 6.6e-68 261.5 191 68.1
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 8.7e-68 261.2 192 67.2
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 1.1e-67 260.8 182 68.7
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 1.5e-67 260.4 191 62.3
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 1.9e-67 260.0 196 66.3
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 2.8e-66 256.1 181 69.1
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 3.6e-66 255.8 188 67.0
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 4.8e-66 255.4 190 63.2
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 8.1e-66 254.6 187 65.2
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 8.1e-66 254.6 191 66.5
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 1.1e-65 254.2 200 64.0
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 1.4e-65 253.8 238 55.9
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 1.8e-65 253.4 187 66.3
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 1.8e-65 253.4 188 64.4
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 2.4e-65 253.1 191 66.0
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 2.4e-65 253.1 228 59.6
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 3.1e-65 252.7 239 54.8
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 3.1e-65 252.7 188 68.1
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 4.0e-65 252.3 181 66.9
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 5.3e-65 251.9 197 61.9
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 1.2e-64 250.8 188 63.3
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 2.6e-64 249.6 188 66.0
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 3.4e-64 249.2 181 66.3
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 4.5e-64 248.8 189 64.6
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 5.8e-64 248.4 194 61.9
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 5.8e-64 248.4 191 62.8
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 9.9e-64 247.7 194 61.3
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 1.7e-63 246.9 169 68.6
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 3.8e-63 245.7 198 61.6
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 4.9e-63 245.4 187 62.0
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 4.9e-63 245.4 195 61.5
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 6.4e-63 245.0 188 62.2
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 8.4e-63 244.6 188 62.8
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.1e-62 244.2 197 61.9
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.9e-62 243.4 197 61.4
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 7.1e-62 241.5 177 66.7
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 1.2e-61 240.7 195 56.9
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 1.6e-61 240.4 167 69.5
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 2.1e-61 240.0 188 64.4
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 3.5e-61 239.2 188 60.1
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 7.9e-61 238.0 190 61.1
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.3e-60 236.5 197 60.4
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 3.0e-60 236.1 195 59.5
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 3.0e-60 236.1 262 56.5
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 3.0e-60 236.1 219 55.7
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 1.9e-59 233.4 203 57.6
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 3.3e-59 232.6 200 58.5
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 7.4e-59 231.5 205 58.5
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 9.6e-59 231.1 191 61.8
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 4.8e-58 228.8 205 57.6
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 8.1e-58 228.0 202 57.4
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 8.1e-58 228.0 169 64.5
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 8.1e-58 228.0 153 69.9
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 8.1e-58 228.0 173 61.3
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 5.3e-57 225.3 192 54.7
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 3.4e-56 222.6 186 55.4
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 1.0e-55 221.1 153 67.3
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 1.7e-55 220.3 212 61.3
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 2.2e-55 219.9 192 53.6
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 3.8e-55 219.2 212 60.8
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 2.5e-54 216.5 238 48.7
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 7.1e-54 214.9 188 52.1
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 9.3e-54 214.5 144 69.4
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 1.0e-52 211.1 206 52.4
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 2.3e-52 209.9 188 54.3
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 3.0e-52 209.5 157 68.8
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 7.4e-51 204.9 212 59.9
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 7.4e-51 204.9 211 59.2
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 9.6e-51 204.5 155 64.5
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 3.3e-43 179.5 137 63.5
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 5.7e-43 178.7 133 66.9
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 5.7e-43 178.7 138 63.8
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 4.8e-42 175.6 152 53.3
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 3.1e-41 172.9 168 51.2
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 5.3e-41 172.2 142 55.6
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 3.4e-40 169.5 130 62.3
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 2.0e-35 153.7 153 58.2
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 1.1e-33 147.9 143 55.9
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 1.2e-32 144.4 95 70.5
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 5.7e-27 125.6 84 69.0
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 2.7e-21 106.7 82 62.2
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 1.8e-20 104.0 89 59.6
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 1.7e-18 97.4 151 39.7
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 1.6e-13 80.9 125 39.2
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 3.4e-11 73.2 50 64.0
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 1.3e-10 71.2 152 29.6
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 2.0e-08 63.9 37 75.7
BcaC01g01754 Brassica carinata HOM05D005796 ORTHO05D007054 1.0e-07 61.6 117 40.2
C03p72260 Brassica napus HOM05D005796 ORTHO05D007054 1.0e-07 61.6 117 40.2
BolC3t19521H Brassica oleracea HOM05D005796 ORTHO05D007054 1.0e-07 61.6 117 40.2
Cre11.g467679 Chlamydomonas reinhardtii HOM05D019738 ORTHO05D022279 1.9e-06 57.4 148 27.0
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 1.9e-06 57.4 79 40.5


User provided reference genes

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