Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 2.9e-288 994.6 522 100.0
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.3e-285 985.7 522 99.2
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 6.7e-285 983.4 522 99.0
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 5.7e-284 980.3 519 98.8
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 2.4e-282 974.9 519 98.3
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 3.3e-260 901.4 527 89.0
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 2.4e-258 895.2 537 87.0
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 2.7e-249 865.1 526 87.3
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 9.5e-247 856.7 531 85.7
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 1.8e-245 852.4 530 84.9
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 1.5e-244 849.4 532 84.8
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 2.2e-243 845.5 525 84.2
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 1.8e-229 799.3 535 79.1
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 1.9e-207 726.1 537 73.2
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 8.4e-187 657.5 527 75.0
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 4.5e-180 635.2 540 63.7
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 1.1e-178 630.6 542 63.7
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.2e-178 629.0 511 65.4
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 9.3e-178 627.5 515 65.2
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 1.2e-177 627.1 522 63.8
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 1.2e-177 627.1 532 63.2
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.0e-176 622.5 515 64.3
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 8.7e-176 620.9 544 62.3
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 3.7e-174 615.5 548 60.4
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 4.8e-174 615.1 537 60.7
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 6.3e-174 614.8 533 63.4
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 3.1e-173 612.5 536 62.1
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 5.3e-173 611.7 548 59.9
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.9e-170 603.2 556 59.0
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.9e-170 603.2 508 64.4
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 5.5e-170 601.7 562 58.5
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 5.5e-170 601.7 442 68.6
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 7.2e-170 601.3 560 58.9
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 4.6e-169 598.6 495 64.2
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 3.9e-168 595.5 493 63.7
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 9.7e-167 590.9 557 57.8
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.3e-166 590.5 461 68.1
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 8.2e-166 587.8 465 67.1
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 1.4e-165 587.0 536 61.4
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 1.8e-165 586.6 468 66.7
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 6.9e-165 584.7 524 61.5
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 4.5e-164 582.0 550 59.6
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 5.9e-164 581.6 468 65.4
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 5.9e-164 581.6 468 65.4
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 7.7e-164 581.3 516 60.3
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 1.3e-163 580.5 535 57.9
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 6.5e-163 578.2 545 57.4
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 6.5e-163 578.2 476 65.3
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 4.2e-162 575.5 540 58.7
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 7.2e-162 574.7 530 58.9
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 3.6e-161 572.4 544 56.8
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 3.6e-161 572.4 480 63.8
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 4.7e-161 572.0 527 59.2
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 1.4e-160 570.5 467 65.3
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 3.9e-160 568.9 547 56.7
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 1.1e-159 567.4 533 57.0
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 5.7e-159 565.1 482 62.2
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 7.4e-159 564.7 516 58.5
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 2.2e-158 563.1 519 58.8
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 3.7e-158 562.4 517 59.4
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 3.7e-158 562.4 515 57.5
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 4.8e-158 562.0 451 64.5
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 6.3e-158 561.6 530 58.7
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 1.8e-157 560.1 524 57.4
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 1.8e-157 560.1 602 52.8
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.4e-157 559.7 509 59.3
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 7.0e-157 558.1 474 63.3
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 3.5e-156 555.8 471 61.8
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.5e-156 555.4 513 59.5
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 5.9e-156 555.1 473 60.7
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.7e-156 554.7 512 59.8
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.7e-156 554.7 511 60.1
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.0e-155 554.3 514 60.1
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.7e-155 553.5 514 59.3
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 2.2e-155 553.1 561 55.3
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 5.0e-155 552.0 514 59.3
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.8e-152 543.5 508 58.1
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 6.7e-152 541.6 523 56.8
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.1e-151 540.8 431 64.0
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 1.1e-151 540.8 463 59.8
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 2.6e-151 539.7 445 64.5
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.3e-151 539.3 494 59.1
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 9.7e-151 537.7 465 59.8
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 6.3e-150 535.0 518 58.7
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 5.9e-148 528.5 427 64.6
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 2.2e-147 526.6 524 56.7
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 1.9e-146 523.5 553 56.2
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 2.1e-145 520.0 525 56.2
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 1.5e-143 513.8 485 57.9
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 2.0e-143 513.5 451 60.3
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 2.0e-143 513.5 508 55.5
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 3.7e-142 509.2 463 60.3
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 7.0e-141 505.0 470 60.4
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 1.9e-138 496.9 444 60.6
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 3.6e-137 492.7 409 60.4
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 8.8e-136 488.0 480 56.9
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 1.4e-133 480.7 673 45.8
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 2.3e-131 473.4 322 73.3
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 2.9e-131 473.0 528 52.1
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 1.1e-130 471.1 511 51.9
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 7.2e-130 468.4 340 70.9
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 2.1e-129 466.8 528 52.5
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 4.7e-129 465.7 539 51.8
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.8e-128 463.8 498 50.8
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 2.4e-125 453.4 345 68.4
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 3.5e-124 449.5 523 48.6
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.1e-120 436.4 412 57.8
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.2e-119 434.5 463 54.0
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 3.7e-102 376.3 424 52.1
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 4.1e-101 372.9 213 82.2
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 3.3e-90 336.7 370 49.5
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 7.3e-90 335.5 547 41.5
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 6.9e-88 328.9 259 65.3
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 8.4e-86 322.0 287 55.1
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.4e-69 268.1 222 65.3
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 4.8e-65 253.1 349 40.7
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 3.1e-64 250.4 283 51.6
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 4.0e-64 250.0 390 38.2
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 2.6e-55 220.7 486 31.3
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.0e-42 177.9 225 47.1
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.0e-36 156.0 95 81.1
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 2.8e-33 147.5 129 52.7
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 2.6e-31 141.0 200 37.0
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 2.1e-28 131.3 228 41.7
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 3.5e-23 114.0 80 66.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 4.5e-23 113.6 62 83.9
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 4.0e-19 100.5 135 41.5
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.3e-17 95.5 126 52.4
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 5.0e-14 83.6 83 51.8
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 1.3e-06 58.9 49 65.3


User provided reference genes

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