Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 4.9e-214 747.7 412 100.0
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 2.7e-212 741.9 416 99.0
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 2.7e-212 741.9 416 99.0
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 3.5e-204 714.9 418 95.5
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 3.5e-204 714.9 418 95.5
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 6.0e-188 661.0 414 90.1
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 9.6e-178 627.1 420 83.3
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 3.1e-176 622.1 416 83.7
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 1.3e-169 600.1 421 83.6
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 3.2e-165 585.5 413 83.5
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 4.2e-165 585.1 414 83.1
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 1.8e-163 579.7 417 82.7
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 1.1e-162 577.0 404 82.7
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 1.5e-162 576.6 413 83.1
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 5.7e-162 574.7 413 82.8
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 1.2e-159 567.0 417 81.8
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 1.2e-159 567.0 410 81.7
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 2.1e-156 556.2 418 80.4
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 2.3e-155 552.7 419 78.5
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 8.2e-137 491.1 420 74.3
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 6.5e-134 481.5 417 72.2
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 9.4e-133 477.6 400 63.5
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 2.3e-131 473.0 405 63.7
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 2.3e-131 473.0 407 63.9
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 1.2e-130 470.7 399 64.2
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 3.4e-130 469.2 403 67.7
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 4.4e-130 468.8 402 67.2
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 4.4e-130 468.8 407 66.6
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 5.7e-130 468.4 405 63.5
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 9.8e-130 467.6 405 63.5
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 1.1e-128 464.2 403 67.2
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 1.1e-128 464.2 410 67.6
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 1.8e-128 463.4 405 61.7
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 3.1e-128 462.6 405 67.2
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 5.4e-128 461.8 400 65.5
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 3.5e-127 459.1 405 64.9
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 4.5e-127 458.8 410 71.7
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 1.0e-126 457.6 400 67.0
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 1.0e-126 457.6 414 63.3
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 1.3e-126 457.2 388 68.0
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 2.9e-126 456.1 400 64.0
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 5.0e-126 455.3 433 58.7
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 3.2e-125 452.6 410 65.6
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 5.5e-125 451.8 399 64.7
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 9.4e-125 451.1 407 69.8
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.2e-124 450.7 429 63.4
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 2.1e-124 449.9 407 70.5
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 2.7e-124 449.5 417 59.5
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 4.7e-124 448.7 396 62.9
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 4.7e-124 448.7 398 66.8
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 6.1e-124 448.4 424 59.7
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 6.1e-124 448.4 402 64.7
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 1.0e-123 447.6 406 65.8
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 1.4e-123 447.2 404 65.3
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.8e-123 446.8 411 65.9
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 2.3e-123 446.4 412 63.8
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 3.0e-123 446.0 393 67.4
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 6.8e-123 444.9 431 62.6
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 8.8e-123 444.5 392 66.1
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 1.2e-122 444.1 403 71.0
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 1.5e-122 443.7 408 65.4
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 1.5e-122 443.7 411 64.0
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 2.0e-122 443.4 432 64.6
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 9.8e-122 441.0 418 61.0
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 1.7e-121 440.3 403 63.5
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 4.9e-121 438.7 394 67.3
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 8.3e-121 438.0 400 61.5
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 1.1e-120 437.6 405 64.4
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 1.1e-120 437.6 404 65.8
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 3.1e-120 436.0 432 62.3
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 4.1e-120 435.6 392 65.1
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 5.4e-120 435.3 411 62.8
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 7.0e-120 434.9 398 64.3
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 9.1e-120 434.5 372 70.2
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 9.1e-120 434.5 398 66.6
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.0e-118 431.0 406 57.6
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 1.0e-118 431.0 419 57.0
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 2.3e-118 429.9 405 57.3
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 2.3e-118 429.9 389 65.3
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 2.9e-118 429.5 398 58.3
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 5.0e-118 428.7 435 60.0
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 1.9e-117 426.8 449 53.5
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 1.6e-116 423.7 396 63.4
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 8.9e-115 417.9 395 60.8
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 1.2e-114 417.5 423 59.1
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.4e-114 416.0 415 59.8
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.7e-113 413.7 418 58.9
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 2.9e-113 412.9 349 63.3
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 3.7e-113 412.5 370 68.4
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 4.9e-113 412.1 381 66.4
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 3.2e-112 409.5 406 58.1
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.2e-112 409.5 423 57.7
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.2e-112 409.5 421 58.0
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 5.9e-111 405.2 351 70.7
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 3.9e-110 402.5 455 57.8
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 8.6e-110 401.4 398 59.0
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 6.2e-108 395.2 352 59.1
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 1.2e-106 391.0 359 59.3
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 8.3e-105 384.8 407 58.7
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 5.4e-104 382.1 350 58.3
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 1.6e-103 380.6 391 52.7
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 2.0e-103 380.2 317 63.1
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 2.7e-103 379.8 378 56.9
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 3.5e-103 379.4 387 53.0
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 7.8e-103 378.3 397 56.2
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 7.8e-103 378.3 353 63.5
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 1.3e-102 377.5 407 57.5
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.3e-102 376.7 407 57.2
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 1.6e-100 370.5 306 71.6
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 4.7e-100 369.0 403 56.8
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.2e-100 368.6 403 56.6
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.1e-99 366.3 405 53.3
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 4.0e-99 365.9 362 60.2
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 6.8e-99 365.2 344 62.2
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.4e-98 362.8 422 54.7
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 1.5e-93 347.4 363 58.1
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 2.6e-90 336.7 342 55.3
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 8.6e-86 321.6 176 83.5
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 1.4e-83 314.3 331 51.1
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 5.8e-82 308.9 160 86.9
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 5.8e-82 308.9 391 46.0
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 7.6e-82 308.5 363 47.9
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.7e-81 307.4 432 44.0
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.6e-79 300.8 352 48.3
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.0e-78 298.1 346 47.1
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 5.1e-78 295.8 376 53.5
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 4.4e-74 282.7 320 47.5
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 2.4e-64 250.4 287 61.0
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 9.3e-64 248.4 291 58.8
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 6.0e-63 245.7 131 84.0
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 1.6e-55 221.1 116 85.3
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 1.9e-53 214.2 299 51.8
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 3.1e-51 206.8 114 81.6
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.0e-46 191.8 113 73.5
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.7e-45 186.0 172 52.9
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 4.8e-44 183.0 290 46.9
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 8.5e-41 172.2 92 81.5
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 9.4e-40 168.7 336 34.2
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 1.7e-33 147.9 163 52.8
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 4.1e-27 126.7 153 50.3
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 1.7e-25 121.3 278 32.4
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 2.3e-22 110.9 98 60.2
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 2.0e-13 81.3 119 45.4
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 2.0e-13 81.3 68 57.4


User provided reference genes

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