Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02426 Brassica carinata HOM05D002943 ORTHO05D002685 4.6e-55 219.2 313 100.0
C03p65420 Brassica napus HOM05D002943 ORTHO05D002685 3.0e-54 216.5 313 99.7
BolC3t18794H Brassica oleracea HOM05D002943 ORTHO05D002685 3.0e-54 216.5 313 99.7
A06p28410 Brassica napus HOM05D002943 ORTHO05D002685 1.5e-42 177.6 316 94.3
BraA06t25785Z Brassica rapa HOM05D002943 ORTHO05D002685 2.6e-42 176.8 318 93.7
Thhalv10010551m.g Eutrema salsugineum HOM05D002943 ORTHO05D002685 2.5e-37 160.2 315 88.3
Sp5g12420 Schrenkiella parvula HOM05D002943 ORTHO05D002685 9.6e-37 158.3 315 89.8
CARHR158730 Cardamine hirsuta HOM05D002943 ORTHO05D002685 2.4e-35 153.7 316 85.8
THA.LOC104798430 Tarenaya hassleriana HOM05D002943 ORTHO05D002685 1.5e-34 151.0 314 84.7
BcaB01g00685 Brassica carinata HOM05D002943 ORTHO05D002685 5.8e-34 149.1 318 88.1
Carub.0005s1601 Capsella rubella HOM05D002943 ORTHO05D002685 2.2e-33 147.1 315 84.8
Aa31LG4G18140 Aethionema arabicum HOM05D002943 ORTHO05D002685 9.3e-32 141.7 315 87.0
AT3G49660 Arabidopsis thaliana HOM05D002943 ORTHO05D002685 4.6e-31 139.4 315 85.4
AL5G29510 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 1.5e-29 134.4 315 85.1
Carub.0008s2659 Capsella rubella HOM05D002943 ORTHO05D002685 6.9e-27 125.6 315 86.0
Thecc.01G081600 Theobroma cacao HOM05D002943 ORTHO05D002685 3.3e-21 106.7 307 79.5
Lj4g0007346 Lotus japonicus HOM05D002943 ORTHO05D002685 9.7e-21 105.1 312 80.8
arahy.Tifrunner.gnm1.ann1.RFJS66 Arachis hypogaea HOM05D002943 ORTHO05D002685 2.2e-20 104.0 312 73.1
arahy.Tifrunner.gnm1.ann1.DT5KC6 Arachis hypogaea HOM05D002943 ORTHO05D002685 8.2e-20 102.1 312 72.1
arahy.Tifrunner.gnm1.ann1.MJC5Q8 Arachis hypogaea HOM05D002943 ORTHO05D002685 8.2e-20 102.1 312 72.1
AL8G43350 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 1.1e-19 101.7 109 76.1
AL8G43360 Arabidopsis lyrata HOM05D001456 ORTHO05D013730 1.1e-19 101.7 109 76.1
Lalb_Chr13g0303681 Lupinus albus HOM05D002943 ORTHO05D002685 1.4e-19 101.3 309 71.5
CiPaw.07G041100 Carya illinoinensis HOM05D002943 ORTHO05D002685 2.4e-19 100.5 308 82.1
Ca_14440_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 2.4e-19 100.5 315 72.1
Gohir.A11G210200 Gossypium hirsutum HOM05D002943 ORTHO05D002685 2.4e-19 100.5 312 81.7
Gohir.D11G212900 Gossypium hirsutum HOM05D002943 ORTHO05D002685 3.1e-19 100.1 312 81.7
Gorai.007G228800 Gossypium raimondii HOM05D002943 ORTHO05D002685 3.1e-19 100.1 312 81.7
Medtr4g119620 Medicago truncatula HOM05D002943 ORTHO05D002685 3.1e-19 100.1 315 72.1
RcHm_v2.0_Chr2g0109631 Rosa chinensis HOM05D002943 ORTHO05D002685 3.1e-19 100.1 317 71.9
Psat0s2006g0120 Pisum sativum HOM05D002943 ORTHO05D002685 4.1e-19 99.8 315 69.2
TPR.G3207 Trifolium pratense HOM05D002943 ORTHO05D002685 6.9e-19 99.0 315 71.7
Haze_03949 Corylus avellana HOM05D002943 ORTHO05D002685 9.0e-19 98.6 307 80.1
Phvul.003G104000 Phaseolus vulgaris HOM05D002943 ORTHO05D002685 9.0e-19 98.6 316 71.2
VMungo1215G0795 Vigna mungo HOM05D002943 ORTHO05D002685 9.0e-19 98.6 316 71.2
COL.COLO4_11661 Corchorus olitorius HOM05D002943 ORTHO05D002685 1.2e-18 98.2 307 81.4
Lalb_Chr07g0177661 Lupinus albus HOM05D002943 ORTHO05D002685 1.5e-18 97.8 309 73.5
Prupe.6G211800 Prunus persica HOM05D002943 ORTHO05D002685 2.6e-18 97.1 315 71.4
CARHR279680 Cardamine hirsuta HOM05D002943 ORTHO05D002685 5.9e-18 95.9 101 77.2
ClCG01G018070 Citrullus lanatus HOM05D002943 ORTHO05D002685 5.9e-18 95.9 308 81.5
Cpa.g.sc129.34 Carica papaya HOM05D002943 ORTHO05D002685 7.7e-18 95.5 326 69.9
Glyma.07G248900 Glycine max HOM05D002943 ORTHO05D002685 1.3e-17 94.7 308 72.4
Glyma.17G025400 Glycine max HOM05D002943 ORTHO05D002685 1.7e-17 94.4 308 72.7
Duzib147G1423 Durio zibethinus HOM05D002943 ORTHO05D002685 2.2e-17 94.0 313 78.9
Cfa006809 Carpinus fangiana HOM05D002943 ORTHO05D002685 2.9e-17 93.6 307 81.8
Sc09g0001310 Simmondsia chinensis HOM05D002943 ORTHO05D002685 2.9e-17 93.6 312 79.2
MD16G1282400 Malus domestica HOM05D002943 ORTHO05D002685 3.8e-17 93.2 310 81.0
CsaV3_6G044600 Cucumis sativus L. HOM05D002943 ORTHO05D002685 5.0e-17 92.8 308 80.8
Manes.12G119800 Manihot esculenta HOM05D002943 ORTHO05D002685 6.5e-17 92.4 310 81.3
Sabra07G0007300 Salix brachista HOM05D002943 ORTHO05D002685 1.4e-16 91.3 309 80.9
SalBow3G3920 Salvia bowleyana HOM05D002943 ORTHO05D002685 1.4e-16 91.3 308 77.6
SGA_v2.0_scaffold121G33104 Striga asiatica HOM05D002943 ORTHO05D002685 3.2e-16 90.1 308 76.6
Potri.007G009500 Populus trichocarpa HOM05D002943 ORTHO05D002685 5.5e-16 89.4 312 80.1
MD01G1047000 Malus domestica HOM05D002943 ORTHO05D002685 7.2e-16 89.0 310 80.6
Ah.06g195170 Amaranthus hybridus HOM05D002943 ORTHO05D002685 2.1e-15 87.4 308 76.3
TWI74G1409 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 2.1e-15 87.4 309 78.6
Duzib187G0476 Durio zibethinus HOM05D002943 ORTHO05D002685 2.7e-15 87.0 305 81.0
CANSAT01G2837 Cannabis sativa HOM05D002943 ORTHO05D002685 3.6e-15 86.7 315 79.7
Ciclev10026097m.g Citrus clementina HOM05D002943 ORTHO05D002685 3.6e-15 86.7 311 80.1
GSVIVG01003702001 Vitis vinifera HOM05D002943 ORTHO05D002685 4.6e-15 86.3 305 82.3
SHI12121 Sapria himalayana HOM05D002943 ORTHO05D002685 1.8e-14 84.3 308 78.2
FvH4_1g18760 Fragaria vesca HOM05D002943 ORTHO05D002685 3.0e-14 83.6 313 78.9
FAN19G1191 Fragaria x ananassa HOM05D002943 ORTHO05D002685 3.0e-14 83.6 313 78.9
AUR62000261 Chenopodium quinoa HOM05D002943 ORTHO05D002685 8.8e-14 82.0 307 65.8
Hund07388 Selenicereus undatus HOM05D002943 ORTHO05D002685 8.8e-14 82.0 305 78.4
TWI53G1603 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 8.8e-14 82.0 304 78.9
Sed0027180 Sechium edule HOM05D002943 ORTHO05D002685 2.5e-13 80.5 313 76.7
PGR031G0631 Punica granatum HOM05D002943 ORTHO05D002685 3.3e-13 80.1 309 78.6
FAN23G1457 Fragaria x ananassa HOM05D002943 ORTHO05D002685 4.3e-13 79.7 313 78.9
FAN28G1172 Fragaria x ananassa HOM05D002943 ORTHO05D002685 4.3e-13 79.7 313 78.9
Potri.005G148500 Populus trichocarpa HOM05D002943 ORTHO05D002685 4.3e-13 79.7 314 78.7
Aqoxy5G01866 Aquilegia oxysepala HOM05D002943 ORTHO05D002685 5.7e-13 79.3 305 79.3
EL10Ac4g10037 Beta vulgaris HOM05D002943 ORTHO05D002685 7.4e-13 79.0 309 76.7
Rhsim10G0085400 Rhododendron simsii HOM05D002943 ORTHO05D002685 9.7e-13 78.6 305 76.1
Psat0s2006g0160 Pisum sativum HOM05D002943 ORTHO05D002685 6.3e-12 75.9 107 63.6
Migut.H00305 Erythranthe guttata HOM05D002943 ORTHO05D002685 4.1e-11 73.2 308 78.9
Oeu025000.1 Olea europaea HOM05D002943 ORTHO05D002685 1.2e-10 71.6 317 77.6
QL06p037843 Quercus lobata HOM05D002943 ORTHO05D002685 7.7e-10 68.9 325 54.8
Atru.chr3.1120 Acer truncatum HOM05D002943 ORTHO05D002685 1.7e-09 67.8 126 84.9
Dinv36997 Davidia involucrata HOM05D002943 ORTHO05D002685 1.7e-09 67.8 128 85.2
HanXRQChr14g0447041 Helianthus annuus HOM05D002943 ORTHO05D002685 2.2e-09 67.4 126 84.9
AUR62006609 Chenopodium quinoa HOM05D002943 ORTHO05D002685 3.8e-09 66.6 307 56.7
Oeu054736.1 Olea europaea HOM05D002943 ORTHO05D002685 5.0e-09 66.2 84 40.5
PSO541G4758 Papaver somniferum HOM05D002943 ORTHO05D002685 6.5e-09 65.9 126 84.9
PSO675G4958 Papaver somniferum HOM05D002943 ORTHO05D002685 6.5e-09 65.9 126 84.9
Actinidia11939 Actinidia chinensis HOM05D002943 ORTHO05D002685 8.5e-09 65.5 126 81.7
Cc07_g07680 Coffea canephora HOM05D002943 ORTHO05D002685 8.5e-09 65.5 128 83.6
MBI16_g14668_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 8.5e-09 65.5 308 74.4
Oeu012607.1 Olea europaea HOM05D002943 ORTHO05D002685 8.5e-09 65.5 126 82.5
Hma1.2p1_0996F.1_g245920 Hydrangea macrophylla HOM05D002943 ORTHO05D002685 1.4e-08 64.7 126 84.1
Lsat_1_v5_gn_2_81981 Lactuca sativa HOM05D002943 ORTHO05D002685 1.4e-08 64.7 126 84.1
Lj4A173G12 Lonicera japonica HOM05D002943 ORTHO05D002685 1.9e-08 64.3 126 84.1
Nitab4.5_0000093g0160 Nicotiana tabacum HOM05D002943 ORTHO05D002685 3.2e-08 63.5 125 83.2
unitig_0.g486 Utricularia gibba HOM05D002943 ORTHO05D002685 3.2e-08 63.5 107 58.9
Eucgr.H02400 Eucalyptus grandis HOM05D002943 ORTHO05D002685 4.2e-08 63.2 126 83.3
ECA238G4010 Erigeron canadensis HOM05D002943 ORTHO05D002685 5.5e-08 62.8 126 81.7
Actinidia36393 Actinidia chinensis HOM05D002943 ORTHO05D002685 7.2e-08 62.4 126 83.3
Nn1g05949 Nelumbo nucifera HOM05D002943 ORTHO05D002685 7.2e-08 62.4 126 83.3
Nitab4.5_0000396g0220 Nicotiana tabacum HOM05D002943 ORTHO05D002685 7.2e-08 62.4 125 83.2
Lj2C426T10 Lonicera japonica HOM05D002943 ORTHO05D002685 9.4e-08 62.0 84 40.5
CDE06G1770 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 1.2e-07 61.6 83 75.9
vmacro05467 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 1.2e-07 61.6 82 39.0
Pp3c10_4790 Physcomitrium patens HOM05D009278 ORTHO05D002685 1.6e-07 61.2 81 74.1
Nn1g05606 Nelumbo nucifera HOM05D002943 ORTHO05D002685 2.1e-07 60.8 82 37.8
CSS0032407 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 2.7e-07 60.5 82 37.8
CDE04G2187 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 2.7e-07 60.5 83 75.9
TAR376G1143 Trochodendron aralioides HOM05D002943 ORTHO05D002685 2.7e-07 60.5 126 82.5
TAR628G0306 Trochodendron aralioides HOM05D002943 ORTHO05D002685 2.7e-07 60.5 126 82.5
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 3.6e-07 60.1 81 74.1
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 6.1e-07 59.3 84 36.9
Zm00001eb325010 Zea mays HOM05D002943 ORTHO05D002685 6.1e-07 59.3 84 36.9
Pp3c2_20770 Physcomitrium patens HOM05D009278 ORTHO05D002685 7.9e-07 58.9 79 75.9
CSS0015908 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 1.0e-06 58.5 84 78.6
Dinv26988 Davidia involucrata HOM05D002943 ORTHO05D002685 1.0e-06 58.5 128 78.1
Sed0026548 Sechium edule HOM05D002943 ORTHO05D002685 1.0e-06 58.5 82 36.6
SMO119G0268 Selaginella moellendorffii HOM05D002943 ORTHO05D002685 2.3e-06 57.4 125 82.4
ATR0332G110 Amborella trichopoda HOM05D002943 ORTHO05D002685 3.0e-06 57.0 125 81.6
RcHm_v2.0_Chr6g0290821 Rosa chinensis HOM05D002943 ORTHO05D002685 3.0e-06 57.0 83 36.1
Aqoxy2G03372 Aquilegia oxysepala HOM05D002943 ORTHO05D002685 3.9e-06 56.6 82 36.6
Cpa.g.sc52.53 Carica papaya HOM05D002943 ORTHO05D002685 3.9e-06 56.6 82 76.8
CiPaw.07G090800 Carya illinoinensis HOM05D002943 ORTHO05D002685 3.9e-06 56.6 84 36.9
Atru.chr5.1459 Acer truncatum HOM05D002943 ORTHO05D002685 5.1e-06 56.2 81 77.8
Ciclev10033651m.g Citrus clementina HOM05D002943 ORTHO05D002685 5.1e-06 56.2 105 35.2
Mapoly0035s0097 Marchantia polymorpha HOM05D002943 ORTHO05D002685 5.1e-06 56.2 81 76.5
Os07g0572000 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 5.1e-06 56.2 84 35.7
TWI59G0374 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 5.1e-06 56.2 82 36.6
vmacro02583 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 5.1e-06 56.2 82 36.6
AagrBONN_evm.TU.Sc2ySwM_362.2759 Anthoceros agrestis HOM05D002943 ORTHO05D002685 6.7e-06 55.8 124 75.0
GSVIVG01001162001 Vitis vinifera HOM05D002943 ORTHO05D002685 6.7e-06 55.8 82 36.6
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 6.7e-06 55.8 82 31.7
Cfa006157 Carpinus fangiana HOM05D002943 ORTHO05D002685 8.8e-06 55.5 84 35.7
MD03G1263200 Malus domestica HOM05D002943 ORTHO05D002685 8.8e-06 55.5 82 35.4


User provided reference genes

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