Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 9.8e-59 229.9 118 100.0
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 2.1e-37 159.1 82 98.8
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 4.0e-20 101.7 75 73.3
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 6.9e-20 100.9 68 79.4
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 2.0e-19 99.4 79 75.9
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.6e-19 99.0 93 64.5
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 3.4e-19 98.6 78 76.9
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 3.4e-19 98.6 78 76.9
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 3.4e-19 98.6 78 76.9
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 9.9e-19 97.1 79 74.7
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 9.9e-19 97.1 79 74.7
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 2.9e-18 95.5 78 75.6
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 8.4e-18 94.0 77 71.4
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.1e-17 93.6 83 66.3
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.4e-17 92.4 79 70.9
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 5.4e-17 91.3 76 68.4
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 7.1e-17 90.9 79 67.1
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 9.3e-17 90.5 78 69.2
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.1e-14 83.6 81 59.3
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.9e-14 82.8 83 57.8
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 3.3e-14 82.0 83 57.8
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 4.3e-14 81.6 83 59.0
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 5.6e-14 81.3 81 56.8
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 5.6e-14 81.3 82 56.1
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 5.6e-14 81.3 83 62.7
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 5.6e-14 81.3 83 57.8
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 7.4e-14 80.9 83 55.4
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 9.6e-14 80.5 83 59.0
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 9.6e-14 80.5 83 57.8
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.3e-13 80.1 83 59.0
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.6e-13 79.7 76 60.5
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.6e-13 79.7 83 56.6
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 2.8e-13 79.0 83 56.6
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 4.8e-13 78.2 83 55.4
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 4.8e-13 78.2 78 59.0
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 8.1e-13 77.4 95 51.6
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 8.1e-13 77.4 78 56.4
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 8.1e-13 77.4 78 56.4
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 8.1e-13 77.4 83 55.4
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.1e-12 77.0 78 57.7
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.1e-12 77.0 81 54.3
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.1e-12 77.0 83 54.2
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.1e-12 77.0 87 51.7
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.1e-12 77.0 87 51.7
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 1.4e-12 76.6 64 67.2
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.4e-12 76.6 83 53.0
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.4e-12 76.6 95 51.6
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.8e-12 76.3 84 54.8
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 1.8e-12 76.3 84 54.8
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.4e-12 75.9 81 55.6
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 4.0e-12 75.1 83 55.4
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 5.3e-12 74.7 79 58.2
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 6.9e-12 74.3 79 55.7
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 6.9e-12 74.3 84 54.8
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 9.0e-12 73.9 79 57.0
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 9.0e-12 73.9 76 56.6
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 9.0e-12 73.9 76 56.6
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 9.0e-12 73.9 76 56.6
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.2e-11 73.6 81 54.3
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.5e-11 73.2 72 61.1
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.5e-11 73.2 82 51.2
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.0e-11 72.8 95 53.7
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.0e-11 72.8 76 61.8
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.0e-11 72.8 84 53.6
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.0e-11 72.8 84 53.6
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.0e-11 72.8 79 58.2
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.0e-11 72.8 90 48.9
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.0e-11 72.8 90 48.9
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 3.4e-11 72.0 62 66.1
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.5e-11 71.6 84 53.6
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 4.5e-11 71.6 62 64.5
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 5.8e-11 71.2 85 50.6
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 5.8e-11 71.2 84 52.4
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.8e-11 71.2 84 52.4
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 7.6e-11 70.9 79 51.9
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 7.6e-11 70.9 91 50.5
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 7.6e-11 70.9 92 50.0
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 9.9e-11 70.5 91 48.4
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.3e-10 70.1 84 54.8
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 1.3e-10 70.1 69 59.4
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.7e-10 69.7 67 59.7
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 2.2e-10 69.3 76 52.6
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 2.2e-10 69.3 69 60.9
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 2.9e-10 68.9 84 51.2
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 2.9e-10 68.9 76 53.9
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.8e-10 68.6 82 53.7
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 4.9e-10 68.2 69 58.0
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 4.9e-10 68.2 91 47.3
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 4.9e-10 68.2 82 53.7
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 4.9e-10 68.2 61 62.3
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 6.4e-10 67.8 93 48.4
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 8.4e-10 67.4 67 58.2
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.9e-09 66.2 78 52.6
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.4e-09 65.9 82 51.2
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 2.4e-09 65.9 82 51.2
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 2.4e-09 65.9 85 50.6
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 3.2e-09 65.5 78 52.6
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 3.2e-09 65.5 85 50.6
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 3.2e-09 65.5 85 51.8
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 4.2e-09 65.1 85 49.4
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 4.2e-09 65.1 80 48.8
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 9.3e-09 63.9 83 48.2
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.2e-08 63.5 36 86.1
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.6e-08 63.2 119 41.2
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.1e-08 62.8 86 47.7
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.1e-08 62.8 103 49.5
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 2.1e-08 62.8 64 54.7
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.7e-08 62.4 86 47.7
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.7e-08 62.4 86 46.5
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 3.5e-08 62.0 91 46.2
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 6.0e-08 61.2 93 44.1
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 7.9e-08 60.8 60 56.7
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.0e-07 60.5 81 50.6
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.3e-07 60.1 81 43.2
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.9e-07 58.5 90 46.7
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.9e-07 58.5 80 46.2
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.9e-07 58.5 88 43.2
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.9e-07 58.5 88 43.2
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 6.7e-07 57.8 86 44.2
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.7e-07 57.8 86 45.3
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-06 57.0 86 45.3
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 1.5e-06 56.6 54 66.7
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.5e-06 56.6 86 44.2
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.5e-06 55.8 86 41.9
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 5.6e-06 54.7 60 53.3
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 7.4e-06 54.3 91 40.7
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 9.6e-06 53.9 86 40.7


User provided reference genes

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