Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.5e-52 209.1 101 100.0
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 4.5e-52 207.6 101 99.0
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 9.9e-52 206.5 101 98.0
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 8.4e-51 203.4 101 95.0
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 2.4e-50 201.8 101 95.0
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 4.2e-50 201.1 101 94.1
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-49 199.5 101 96.0
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.3e-48 195.3 102 94.1
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 3.3e-47 191.4 101 89.1
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 3.3e-47 191.4 101 89.1
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-46 189.5 101 88.1
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 1.3e-46 189.5 101 88.1
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.8e-46 188.3 104 91.3
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 4.0e-45 184.5 102 89.2
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 6.9e-45 183.7 102 88.2
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.2e-44 183.0 102 86.3
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.6e-44 181.8 102 87.3
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 2.2e-43 178.7 102 85.3
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.9e-43 178.3 102 84.3
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.5e-43 177.2 101 84.2
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 6.5e-43 177.2 101 80.2
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.5e-42 175.3 101 87.1
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.5e-42 175.3 101 87.1
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 3.2e-42 174.9 102 81.4
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 4.2e-42 174.5 102 81.4
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.1e-41 172.2 101 79.2
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 2.7e-41 171.8 101 78.2
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 3.5e-41 171.4 102 78.4
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 3.5e-41 171.4 101 78.2
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 3.5e-41 171.4 101 77.2
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 7.9e-41 170.2 101 76.2
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.0e-40 169.9 101 74.3
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.3e-40 168.7 103 77.7
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.0e-40 168.3 101 74.3
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 6.7e-40 167.2 101 73.3
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 6.7e-40 167.2 102 75.5
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 8.7e-40 166.8 101 75.2
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 8.7e-40 166.8 102 76.5
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.1e-39 166.4 101 75.2
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 1.1e-39 166.4 101 73.3
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.5e-39 166.0 101 75.2
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.5e-39 166.0 101 75.2
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 1.5e-39 166.0 103 77.7
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.9e-39 165.6 101 74.3
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.9e-39 165.6 101 74.3
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.9e-39 165.6 105 81.0
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.9e-39 165.6 101 75.2
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 2.5e-39 165.2 100 73.0
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 2.5e-39 165.2 102 75.5
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 3.3e-39 164.9 105 78.1
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 3.3e-39 164.9 105 78.1
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 4.3e-39 164.5 101 74.3
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 4.3e-39 164.5 101 76.2
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.3e-39 164.5 102 75.5
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 4.3e-39 164.5 101 73.3
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 5.7e-39 164.1 101 71.3
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 7.4e-39 163.7 103 79.6
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 7.4e-39 163.7 101 73.3
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 7.4e-39 163.7 103 73.8
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 7.4e-39 163.7 101 74.3
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 7.4e-39 163.7 101 74.3
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 7.4e-39 163.7 101 74.3
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 9.6e-39 163.3 100 71.0
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 9.6e-39 163.3 101 73.3
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 2.1e-38 162.2 101 72.3
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.1e-38 162.2 101 72.3
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 2.8e-38 161.8 101 72.3
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 2.8e-38 161.8 101 72.3
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 3.7e-38 161.4 101 72.3
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.7e-38 161.4 98 73.5
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 4.8e-38 161.0 105 77.1
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 4.8e-38 161.0 105 77.1
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 4.8e-38 161.0 105 77.1
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.8e-38 161.0 102 74.5
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 4.8e-38 161.0 102 74.5
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 4.8e-38 161.0 105 73.3
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 4.8e-38 161.0 103 76.7
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 6.3e-38 160.6 105 77.1
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 6.3e-38 160.6 101 74.3
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 6.3e-38 160.6 101 71.3
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 8.2e-38 160.2 105 77.1
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 8.2e-38 160.2 101 71.3
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.1e-37 159.8 101 70.3
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.4e-37 159.5 101 69.3
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 2.4e-37 158.7 105 76.2
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.4e-37 158.7 100 71.0
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 2.4e-37 158.7 101 72.3
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.1e-37 158.3 101 71.3
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.1e-37 157.9 101 69.3
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.1e-37 157.9 101 69.3
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 4.1e-37 157.9 102 74.5
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 4.1e-37 157.9 102 74.5
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 4.1e-37 157.9 101 70.3
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 5.3e-37 157.5 101 73.3
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 9.0e-37 156.8 101 69.3
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 9.0e-37 156.8 103 72.8
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.2e-36 156.4 99 69.7
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.5e-36 156.0 101 73.3
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.5e-36 156.0 101 70.3
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.6e-36 155.2 101 69.3
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 2.6e-36 155.2 106 75.5
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 2.6e-36 155.2 103 73.8
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.4e-36 154.8 101 70.3
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 3.4e-36 154.8 101 68.3
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 5.9e-36 154.1 103 78.6
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 5.9e-36 154.1 103 78.6
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 5.9e-36 154.1 103 78.6
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 7.6e-36 153.7 101 68.3
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 7.6e-36 153.7 101 68.3
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.0e-35 153.3 101 68.3
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.3e-35 152.9 101 67.3
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 1.3e-35 152.9 101 68.3
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.3e-35 152.9 101 72.3
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.3e-35 152.9 102 68.6
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.7e-35 152.5 103 69.9
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.7e-35 152.5 103 71.8
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 2.2e-35 152.1 101 67.3
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.2e-35 152.1 92 76.1
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 2.9e-35 151.8 104 71.2
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 3.8e-35 151.4 101 71.3
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 5.0e-35 151.0 101 69.3
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 6.5e-35 150.6 101 66.3
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.1e-34 149.8 102 71.6
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.4e-34 149.4 102 66.7
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 1.4e-34 149.4 102 71.6
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.9e-34 149.1 101 65.3
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.9e-34 149.1 102 68.6
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 2.5e-34 148.7 101 66.3
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 7.2e-34 147.1 100 68.0
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.6e-33 146.0 96 70.8
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.7e-33 145.2 95 68.4
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 4.6e-33 144.4 101 67.3
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 6.7e-32 140.6 87 75.9
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 6.7e-32 140.6 87 75.9
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 6.7e-32 140.6 106 64.2
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.5e-31 139.4 87 74.7
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.5e-31 139.4 97 70.1
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.9e-31 139.0 85 76.5
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 5.7e-31 137.5 101 60.4
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 7.4e-31 137.1 101 62.4
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.3e-30 136.3 101 65.3
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 2.2e-30 135.6 80 76.2
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 4.5e-28 127.9 101 63.4
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 8.5e-27 123.6 101 61.4
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.5e-26 122.1 87 69.0
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 1.4e-24 116.3 88 63.6
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 3.9e-24 114.8 78 66.7
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 6.7e-24 114.0 102 53.9
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 6.9e-21 104.0 67 74.6
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 1.5e-20 102.8 91 59.3
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 3.8e-19 98.2 75 65.3
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 6.5e-19 97.4 90 55.6
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 3.3e-15 85.1 96 47.9
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.5e-11 70.9 72 62.5
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 2.5e-10 68.9 58 50.0


User provided reference genes

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