Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02415 Brassica carinata HOM05D002166 ORTHO05D002634 3.6e-35 151.0 73 100.0
BcaC05g28321 Brassica carinata HOM05D002166 ORTHO05D002634 1.3e-21 105.9 50 100.0
C05p43980 Brassica napus HOM05D002166 ORTHO05D002634 1.3e-21 105.9 50 100.0
BolC5t33116H Brassica oleracea HOM05D002166 ORTHO05D002634 1.3e-21 105.9 50 100.0
A05p28560 Brassica napus HOM05D002166 ORTHO05D002634 7.2e-20 100.1 50 94.0
BraA05t21734Z Brassica rapa HOM05D002166 ORTHO05D002634 7.2e-20 100.1 50 94.0
BcaB06g26100 Brassica carinata HOM05D002166 ORTHO05D002634 4.7e-19 97.4 50 92.0
Sp3g18380 Schrenkiella parvula HOM05D002166 ORTHO05D002634 1.3e-16 89.4 49 79.6
AT3G20350 Arabidopsis thaliana HOM05D002166 ORTHO05D002634 1.1e-15 86.3 50 78.0
AL3G34070 Arabidopsis lyrata HOM05D002166 ORTHO05D002634 2.7e-14 81.6 50 78.0
Carub.0003s2030 Capsella rubella HOM05D002166 ORTHO05D002634 7.8e-14 80.1 50 78.0
CARHR096000 Cardamine hirsuta HOM05D002166 ORTHO05D002634 1.1e-12 76.3 50 70.0
AL1G58330 Arabidopsis lyrata HOM05D002166 ORTHO05D002634 1.5e-12 75.9 46 73.9
Carub.0001s3970 Capsella rubella HOM05D002166 ORTHO05D002634 1.5e-12 75.9 46 73.9
Sp1g37510 Schrenkiella parvula HOM05D002166 ORTHO05D002634 1.9e-12 75.5 46 73.9
Thhalv10011268m.g Eutrema salsugineum HOM05D002166 ORTHO05D002634 3.3e-12 74.7 49 67.3
AT1G50660 Arabidopsis thaliana HOM05D002166 ORTHO05D002634 5.6e-12 73.9 46 71.7
BcaB07g33506 Brassica carinata HOM05D002166 ORTHO05D002634 7.3e-12 73.6 46 71.7
Aa31LG10G3670 Aethionema arabicum HOM05D002166 ORTHO05D002634 9.5e-12 73.2 46 71.7
CARHR040710 Cardamine hirsuta HOM05D002166 ORTHO05D002634 9.5e-12 73.2 49 67.3
Aa31LG8G7170 Aethionema arabicum HOM05D002166 ORTHO05D002634 4.7e-11 70.9 47 66.0
BcaC08g43244 Brassica carinata HOM05D002166 ORTHO05D002634 1.0e-10 69.7 51 64.7
A06p02960 Brassica napus HOM05D002166 ORTHO05D002634 1.0e-10 69.7 51 64.7
C06p05920 Brassica napus HOM05D002166 ORTHO05D002634 1.0e-10 69.7 51 64.7
BolC6t35705H Brassica oleracea HOM05D002166 ORTHO05D002634 1.0e-10 69.7 51 64.7
BraA06t23502Z Brassica rapa HOM05D002166 ORTHO05D002634 1.0e-10 69.7 51 64.7
Manes.03G129200 Manihot esculenta HOM05D002166 ORTHO05D002634 1.0e-10 69.7 42 73.8
Aqoxy1G02169 Aquilegia oxysepala HOM05D002166 ORTHO05D002634 2.3e-10 68.6 42 69.0
THA.LOC104817854 Tarenaya hassleriana HOM05D002166 ORTHO05D002634 2.3e-10 68.6 48 66.7
AUR62015775 Chenopodium quinoa HOM05D002166 ORTHO05D002634 6.8e-10 67.0 46 67.4
AUR62020445 Chenopodium quinoa HOM05D002166 ORTHO05D002634 6.8e-10 67.0 46 67.4
Peaxi162Scf00964g00022 Petunia axillaris HOM05D002166 ORTHO05D002634 1.2e-09 66.2 42 69.0
COL.COLO4_09660 Corchorus olitorius HOM05D002166 ORTHO05D002634 2.0e-09 65.5 42 69.0
Gorai.002G088400 Gossypium raimondii HOM05D002166 ORTHO05D002634 2.0e-09 65.5 65 52.3
Manes.15G072000 Manihot esculenta HOM05D002166 ORTHO05D002634 2.0e-09 65.5 42 69.0
Nn1g03540 Nelumbo nucifera HOM05D002166 ORTHO05D002634 2.0e-09 65.5 42 69.0
Nitab4.5_0001913g0130 Nicotiana tabacum HOM05D002166 ORTHO05D002634 2.0e-09 65.5 42 66.7
Nitab4.5_0011129g0010 Nicotiana tabacum HOM05D002166 ORTHO05D002634 2.0e-09 65.5 42 66.7
Duzib268G1828 Durio zibethinus HOM05D002166 ORTHO05D002634 2.6e-09 65.1 42 66.7
Lj8A169T85 Lonicera japonica HOM05D002166 ORTHO05D002634 2.6e-09 65.1 42 64.3
Solyc07g064580.3 Solanum lycopersicum HOM05D002166 ORTHO05D002634 2.6e-09 65.1 42 66.7
TAR626G0812 Trochodendron aralioides HOM05D002166 ORTHO05D002634 2.6e-09 65.1 42 66.7
HPP92_016529 Vanilla planifolia HOM05D002166 ORTHO05D002634 2.6e-09 65.1 42 66.7
Gohir.A01G079400 Gossypium hirsutum HOM05D002166 ORTHO05D002634 3.4e-09 64.7 42 66.7
Gohir.D01G066400 Gossypium hirsutum HOM05D002166 ORTHO05D002634 3.4e-09 64.7 42 66.7
Sc03g0008590 Simmondsia chinensis HOM05D002166 ORTHO05D002634 3.4e-09 64.7 42 66.7
CAN.G337.130 Capsicum annuum HOM05D002166 ORTHO05D002634 5.8e-09 63.9 42 64.3
Cpa.g.sc97.2 Carica papaya HOM05D002166 ORTHO05D002634 5.8e-09 63.9 42 66.7
Cc05_g13700 Coffea canephora HOM05D002166 ORTHO05D002634 5.8e-09 63.9 42 66.7
Sopen07g032770 Solanum pennellii HOM05D002166 ORTHO05D002634 5.8e-09 63.9 42 64.3
PGSC0003DMG400022320 Solanum tuberosum HOM05D002166 ORTHO05D002634 5.8e-09 63.9 42 64.3
EL10Ac4g07812 Beta vulgaris HOM05D002166 ORTHO05D002634 7.5e-09 63.5 46 63.0
Thecc.07G037300 Theobroma cacao HOM05D002166 ORTHO05D002634 7.5e-09 63.5 42 66.7
TAR624G1431 Trochodendron aralioides HOM05D002166 ORTHO05D002634 7.5e-09 63.5 42 61.9
GSVIVG01037646001 Vitis vinifera HOM05D002166 ORTHO05D002634 7.5e-09 63.5 46 65.2
TWI38G0482 Tripterygium wilfordii HOM05D002166 ORTHO05D002634 9.8e-09 63.2 42 66.7
Ciclev10007979m.g Citrus clementina HOM05D002166 ORTHO05D002634 1.3e-08 62.8 42 66.7
Migut.H01828 Erythranthe guttata HOM05D002166 ORTHO05D002634 1.3e-08 62.8 46 65.2
Dinv40752 Davidia involucrata HOM05D002166 ORTHO05D002634 1.7e-08 62.4 42 64.3
Duzib213G0813 Durio zibethinus HOM05D002166 ORTHO05D002634 1.7e-08 62.4 42 69.0
Eucgr.F00765 Eucalyptus grandis HOM05D002166 ORTHO05D002634 2.2e-08 62.0 42 61.9
Gohir.D13G143100 Gossypium hirsutum HOM05D002166 ORTHO05D002634 2.2e-08 62.0 41 63.4
Gorai.013G160000 Gossypium raimondii HOM05D002166 ORTHO05D002634 2.2e-08 62.0 41 63.4
MBI02_g24810_MAGBIO Magnolia biondii HOM05D002166 ORTHO05D002634 2.2e-08 62.0 42 64.3
Potri.011G090100 Populus trichocarpa HOM05D002166 ORTHO05D002634 2.2e-08 62.0 42 66.7
Gohir.A13G138300 Gossypium hirsutum HOM05D002166 ORTHO05D002634 2.9e-08 61.6 41 63.4
Sabra11G0086400 Salix brachista HOM05D002166 ORTHO05D002634 2.9e-08 61.6 50 64.0
Dinv22263 Davidia involucrata HOM05D002166 ORTHO05D002634 3.7e-08 61.2 42 61.9
ATR0752G109 Amborella trichopoda HOM05D002166 ORTHO05D002634 4.9e-08 60.8 42 61.9
Hma1.2p1_0673F.1_g201340 Hydrangea macrophylla HOM05D002166 ORTHO05D002634 4.9e-08 60.8 42 64.3
CSS0020014 Camellia sinensis var. sinensis HOM05D002166 ORTHO05D002634 6.4e-08 60.5 42 61.9
PSO541G1388 Papaver somniferum HOM05D002166 ORTHO05D002634 1.1e-07 59.7 42 61.9
PSO675G8999 Papaver somniferum HOM05D002166 ORTHO05D002634 1.1e-07 59.7 42 61.9
PGR083G0038 Punica granatum HOM05D002166 ORTHO05D002634 1.1e-07 59.7 41 63.4
Dinv13887 Davidia involucrata HOM05D002166 ORTHO05D002634 1.4e-07 59.3 39 64.1
SGA_v2.0_scaffold18G08536 Striga asiatica HOM05D002166 ORTHO05D002634 1.4e-07 59.3 46 56.5
HanXRQChr08g0233861 Helianthus annuus HOM05D002166 ORTHO05D002634 1.9e-07 58.9 43 65.1
Oeu007581.1 Olea europaea HOM05D002166 ORTHO05D002634 1.9e-07 58.9 38 63.2
Hund01993 Selenicereus undatus HOM05D002166 ORTHO05D002634 1.9e-07 58.9 46 63.0
vmacro11726 Vaccinium macrocarpon HOM05D002166 ORTHO05D002634 1.9e-07 58.9 43 62.8
CSS0030432 Camellia sinensis var. sinensis HOM05D002166 ORTHO05D002634 3.2e-07 58.2 46 58.7
MBI18_g36060_MAGBIO Magnolia biondii HOM05D002166 ORTHO05D002634 3.2e-07 58.2 40 62.5
DCAR_022561 Daucus carota HOM05D002166 ORTHO05D002634 4.1e-07 57.8 42 59.5
ECA246G2514 Erigeron canadensis HOM05D002166 ORTHO05D002634 4.1e-07 57.8 43 62.8
HanXRQChr05g0159381 Helianthus annuus HOM05D002166 ORTHO05D002634 5.4e-07 57.4 43 65.1
Phvul.008G267200 Phaseolus vulgaris HOM05D002166 ORTHO05D002634 5.4e-07 57.4 47 57.4
Rhsim06G0216800 Rhododendron simsii HOM05D002166 ORTHO05D002634 5.4e-07 57.4 42 61.9
Solyc12g005010.2 Solanum lycopersicum HOM05D002166 ORTHO05D002634 5.4e-07 57.4 42 59.5
CDE02G2372 Ceratophyllum demersum HOM05D002166 ORTHO05D002634 7.0e-07 57.0 46 56.5
Lsat_1_v5_gn_5_4021 Lactuca sativa HOM05D002166 ORTHO05D002634 7.0e-07 57.0 48 60.4
SEGI_05627 Sequoiadendron giganteum HOM05D002166 ORTHO05D002634 7.0e-07 57.0 38 57.9
TWI38G2284 Tripterygium wilfordii HOM05D002166 ORTHO05D002634 7.0e-07 57.0 42 61.9
Hma1.2p1_2464F.1_g322600 Hydrangea macrophylla HOM05D002166 ORTHO05D002634 9.2e-07 56.6 42 57.1
Hma1.2p1_3160F.1_g333440 Hydrangea macrophylla HOM05D002166 ORTHO05D002634 9.2e-07 56.6 42 57.1
QL05p073305 Quercus lobata HOM05D002166 ORTHO05D002634 9.2e-07 56.6 62 46.8
PGSC0003DMG400016454 Solanum tuberosum HOM05D002166 ORTHO05D002634 9.2e-07 56.6 38 63.2
vmacro09716 Vaccinium macrocarpon HOM05D002166 ORTHO05D002634 9.2e-07 56.6 38 63.2
VMungo0647G1741 Vigna mungo HOM05D002166 ORTHO05D002634 9.2e-07 56.6 45 60.0
DCAR_016704 Daucus carota HOM05D002166 ORTHO05D002634 1.2e-06 56.2 46 60.9
Gohir.D05G369400 Gossypium hirsutum HOM05D002166 ORTHO05D002634 1.2e-06 56.2 38 60.5
Gorai.009G438100 Gossypium raimondii HOM05D002166 ORTHO05D002634 1.2e-06 56.2 38 60.5
Solyc02g080520.4 Solanum lycopersicum HOM05D002166 ORTHO05D002634 2.0e-06 55.5 38 60.5
CDE05G0357 Ceratophyllum demersum HOM05D002166 ORTHO05D002634 2.7e-06 55.1 46 52.2
Nitab4.5_0000981g0080 Nicotiana tabacum HOM05D002166 ORTHO05D002634 2.7e-06 55.1 42 57.1
Sed0003279 Sechium edule HOM05D002166 ORTHO05D002634 2.7e-06 55.1 41 56.1
Sopen12g001020 Solanum pennellii HOM05D002166 ORTHO05D002634 2.7e-06 55.1 42 57.1
PGSC0003DMG400027878 Solanum tuberosum HOM05D002166 ORTHO05D002634 2.7e-06 55.1 42 57.1
Lalb_Chr17g0348461 Lupinus albus HOM05D002166 ORTHO05D002634 3.5e-06 54.7 38 68.4
Nitab4.5_0006428g0010 Nicotiana tabacum HOM05D002166 ORTHO05D002634 3.5e-06 54.7 42 57.1
Peaxi162Scf01097g00414 Petunia axillaris HOM05D002166 ORTHO05D002634 3.5e-06 54.7 42 57.1
Haze_09688 Corylus avellana HOM05D002166 ORTHO05D002634 4.6e-06 54.3 42 64.3
Gohir.A04G016800 Gossypium hirsutum HOM05D002166 ORTHO05D002634 4.6e-06 54.3 38 57.9
Lalb_Chr04g0248451 Lupinus albus HOM05D002166 ORTHO05D002634 4.6e-06 54.3 41 63.4
Oeu042937.1 Olea europaea HOM05D002166 ORTHO05D002634 4.6e-06 54.3 41 56.1
MSTRG.15149 Avicennia marina HOM05D002166 ORTHO05D002634 6.0e-06 53.9 42 54.8
CiPaw.12G129600 Carya illinoinensis HOM05D002166 ORTHO05D002634 6.0e-06 53.9 49 59.2
Psat2g011000 Pisum sativum HOM05D002166 ORTHO05D002634 6.0e-06 53.9 42 61.9
Sed0003496 Sechium edule HOM05D002166 ORTHO05D002634 6.0e-06 53.9 40 55.0
CAN.G569.10 Capsicum annuum HOM05D002166 ORTHO05D002634 7.8e-06 53.5 38 60.5
Os05g0498500 Oryza sativa ssp. japonica HOM05D002166 ORTHO05D002634 7.8e-06 53.5 44 56.8
Phvul.006G042900 Phaseolus vulgaris HOM05D002166 ORTHO05D002634 7.8e-06 53.5 48 54.2
Zm00001eb099560 Zea mays HOM05D002166 ORTHO05D002634 7.8e-06 53.5 42 57.1
Zm00001eb431290 Zea mays HOM05D002166 ORTHO05D002634 7.8e-06 53.5 42 57.1


User provided reference genes

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