Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 3.4e-107 391.7 203 100.0
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 1.9e-94 349.4 181 100.0
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 1.1e-57 227.3 233 60.5
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 9.3e-57 224.2 233 59.7
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 3.5e-56 222.2 234 60.3
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 1.9e-54 216.5 227 58.6
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 1.9e-54 216.5 227 58.6
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 4.4e-51 205.3 234 55.6
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 1.3e-50 203.8 234 55.6
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 1.7e-50 203.4 239 57.3
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 2.4e-49 199.5 234 55.1
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 5.4e-49 198.4 232 54.7
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 2.7e-48 196.1 233 54.9
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 4.0e-44 182.2 227 53.7
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 6.7e-39 164.9 236 49.6
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 3.3e-38 162.5 221 47.5
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 2.7e-32 142.9 188 49.5
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 2.7e-32 142.9 188 49.5
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 4.6e-32 142.1 238 44.1
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 6.0e-32 141.7 220 46.4
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 7.9e-32 141.4 240 42.5
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 1.0e-31 141.0 204 47.5
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 3.0e-31 139.4 239 43.1
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 1.1e-30 137.5 215 43.3
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 1.9e-30 136.7 193 48.2
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 4.3e-30 135.6 180 49.4
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 5.7e-30 135.2 192 45.8
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 1.6e-29 133.7 218 44.0
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 1.6e-29 133.7 242 40.1
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 3.7e-29 132.5 197 46.2
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 3.7e-29 132.5 222 44.1
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 8.2e-29 131.3 215 44.7
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 1.8e-28 130.2 215 44.7
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 1.8e-28 130.2 184 45.1
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 4.1e-28 129.0 184 46.2
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 6.9e-28 128.3 183 47.5
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 9.0e-28 127.9 181 46.4
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 9.0e-28 127.9 228 42.1
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 1.2e-27 127.5 240 37.9
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 1.5e-27 127.1 221 42.5
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 2.0e-27 126.7 223 41.3
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 2.6e-27 126.3 233 40.3
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 2.6e-27 126.3 202 43.1
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 2.6e-27 126.3 202 43.1
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 3.4e-27 125.9 183 45.9
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 4.5e-27 125.6 229 41.0
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 4.5e-27 125.6 234 41.5
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 4.5e-27 125.6 228 41.7
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 7.6e-27 124.8 242 40.9
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 1.3e-26 124.0 181 44.8
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 1.7e-26 123.6 187 43.3
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 1.7e-26 123.6 195 43.1
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 2.2e-26 123.2 183 44.3
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 3.8e-26 122.5 183 42.1
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 5.0e-26 122.1 228 39.5
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 5.0e-26 122.1 204 44.6
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 8.4e-26 121.3 197 44.7
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 8.4e-26 121.3 190 46.3
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 1.1e-25 120.9 192 43.8
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 1.4e-25 120.6 223 39.9
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 1.9e-25 120.2 230 40.4
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 1.9e-25 120.2 183 43.7
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 1.9e-25 120.2 230 39.6
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 2.5e-25 119.8 193 43.0
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 3.2e-25 119.4 230 40.4
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 4.2e-25 119.0 195 42.1
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 5.5e-25 118.6 229 40.2
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 5.5e-25 118.6 191 43.5
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 7.2e-25 118.2 181 44.8
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 7.2e-25 118.2 230 39.6
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 9.3e-25 117.9 238 38.2
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 1.6e-24 117.1 221 41.6
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 2.1e-24 116.7 200 42.5
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 2.7e-24 116.3 234 38.9
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 2.7e-24 116.3 198 41.9
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 2.7e-24 116.3 190 45.3
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 3.5e-24 115.9 233 39.1
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 4.6e-24 115.5 205 42.0
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 6.1e-24 115.2 192 43.2
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 1.3e-23 114.0 231 40.7
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 2.3e-23 113.2 195 40.5
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 3.0e-23 112.8 183 42.6
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 3.0e-23 112.8 183 42.6
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 6.7e-23 111.7 190 44.7
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 8.7e-23 111.3 185 40.5
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 1.5e-22 110.5 220 38.2
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 1.6e-21 107.1 191 41.4
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 1.8e-20 103.6 190 41.1
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 4.1e-20 102.4 59 84.7
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 9.0e-20 101.3 192 38.5
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 7.7e-19 98.2 56 82.1
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 1.3e-18 97.4 202 40.1
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 8.5e-18 94.7 178 38.8
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 1.6e-16 90.5 188 33.0
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 1.6e-16 90.5 192 33.3
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 4.3e-14 82.4 164 38.4
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 1.7e-10 70.5 177 31.6
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 5.5e-09 65.5 58 63.8
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 2.3e-07 60.1 60 48.3


User provided reference genes

Program Settings