Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1982.6 1009 100.0
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1972.6 1009 99.6
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 0.0e+00 1947.6 1029 97.4
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 0.0e+00 1869.4 1020 94.5
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1853.2 1017 93.9
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1843.2 1016 92.8
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 0.0e+00 1763.0 1015 88.6
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1756.1 1017 88.3
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1714.1 1017 86.5
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1694.1 1016 85.5
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1693.3 1018 85.2
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 0.0e+00 1617.4 1017 82.8
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1402.1 1019 71.0
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1192.9 1018 61.5
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1189.1 1020 61.8
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1183.3 1019 61.5
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1175.6 1019 61.5
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1158.7 1021 60.0
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1151.0 1022 59.5
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1150.6 1015 59.2
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1147.1 1018 59.9
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1139.0 1025 59.4
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1124.8 1019 58.3
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1117.8 1020 58.4
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1112.4 1016 57.9
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1112.4 1056 56.0
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1111.7 1027 56.6
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1109.7 1023 57.8
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1107.4 1019 58.4
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1105.1 1022 57.5
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1104.4 1012 56.9
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1099.3 998 57.7
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1094.7 1019 57.5
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1094.0 1036 56.1
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1091.3 1019 56.3
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1090.5 1019 55.7
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1088.9 1015 57.4
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1085.5 1012 57.4
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1085.1 1019 55.6
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1083.6 1015 57.2
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1079.3 1020 57.1
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1075.1 1020 56.3
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 5.2e-310 1067.8 1028 55.4
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 5.8e-309 1064.3 989 56.5
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 4.9e-308 1061.2 1019 55.8
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 1.9e-307 1059.3 1022 57.2
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 2.4e-307 1058.9 1019 56.5
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 5.4e-307 1057.7 1024 57.1
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.7e-305 1052.7 1025 54.4
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 3.3e-304 1048.5 1019 56.0
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 8.1e-303 1043.9 1022 54.5
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 4.0e-302 1041.6 1013 54.2
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 3.4e-301 1038.5 1025 54.6
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 1.4e-299 1033.1 1060 54.5
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 7.1e-299 1030.8 1035 54.4
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 7.1e-299 1030.8 1018 56.0
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 6.0e-298 1027.7 1026 55.6
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 6.2e-295 1017.7 1023 53.8
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 1.8e-294 1016.1 1011 54.9
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 7.6e-293 1010.7 1050 54.1
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 1.1e-291 1006.9 1007 53.4
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 4.6e-290 1001.5 1021 53.3
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 2.3e-289 999.2 904 58.3
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 3.9e-289 998.4 1069 51.6
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 2.5e-288 995.7 1022 52.9
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 5.6e-288 994.6 1030 51.9
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 8.1e-287 990.7 1022 52.6
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 1.1e-286 990.3 1021 53.2
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 9.9e-285 983.8 1021 53.3
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 9.9e-285 983.8 1028 51.9
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 1.7e-284 983.0 1022 52.0
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 6.4e-284 981.1 839 61.7
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 1.4e-283 979.9 989 53.1
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.0e-281 973.8 956 54.6
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 1.1e-280 970.3 1026 52.4
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 9.0e-278 960.7 1018 51.3
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 9.0e-278 960.7 1011 52.3
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 3.8e-276 955.3 1025 51.5
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 1.0e-273 947.2 1007 51.3
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.9e-272 943.0 1033 51.4
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 9.6e-272 940.6 1054 49.9
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.3e-268 930.2 1035 50.8
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 2.2e-268 929.5 1015 50.9
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 4.2e-267 925.2 616 77.9
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 2.5e-264 916.0 1030 48.5
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 3.7e-263 912.1 1017 48.6
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 2.6e-261 906.0 902 54.7
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 9.1e-254 880.9 1024 47.9
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.6e-250 870.2 938 51.5
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 4.8e-247 858.6 1023 47.1
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 3.1e-246 855.9 772 60.5
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 2.2e-244 849.7 1030 47.9
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 2.3e-233 813.1 742 59.2
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 6.5e-228 795.0 1026 45.6
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 8.4e-183 645.2 666 53.6
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.7e-181 640.2 666 53.3
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 2.1e-165 587.4 697 47.8
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.8e-161 574.3 441 69.6
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 6.7e-156 555.8 1061 34.5
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.9e-150 537.7 573 54.6
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.5e-150 537.3 586 48.8
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 3.3e-147 526.9 1056 33.7
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 8.2e-138 495.7 538 52.4
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 4.8e-130 469.9 894 36.0
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 2.7e-117 427.6 357 63.0
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 4.2e-102 377.1 1122 28.9
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 1.3e-98 365.5 1130 27.8
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 2.9e-90 337.8 396 46.2
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 2.5e-78 298.1 325 51.4
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.9e-73 282.0 353 44.5
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 1.3e-53 216.1 254 46.9
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.3e-50 206.1 218 49.5
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 1.2e-40 172.9 551 29.9
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.6e-40 172.6 149 57.0
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 1.1e-38 166.4 198 48.5
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 1.8e-36 159.1 225 45.3
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 5.7e-30 137.5 149 45.6
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.3e-26 126.3 223 33.2
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 6.5e-26 124.0 425 28.2
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 9.1e-20 103.6 78 59.0
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 2.2e-18 99.0 144 38.2
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 6.5e-18 97.4 172 37.8
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.5e-17 94.4 127 39.4
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 9.4e-17 93.6 77 54.5
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 6.1e-16 90.9 215 34.4
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 3.9e-15 88.2 105 43.8
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.1e-15 87.8 66 60.6
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.6e-14 85.5 66 59.1
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 7.4e-14 84.0 102 46.1
PRCOL_00001784 Prasinoderma coloniale HOM05D005223 ORTHO05D006449 4.8e-13 81.3 374 29.4
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.7e-10 72.8 267 27.3
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 2.5e-09 68.9 47 63.8
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 3.2e-09 68.6 66 47.0
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 2.7e-08 65.5 42 69.0
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 1.0e-07 63.5 59 50.8
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 1.0e-07 63.5 59 50.8
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 3.0e-07 62.0 150 34.0
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 5.2e-07 61.2 66 43.9


User provided reference genes

Program Settings