Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 4.5e-167 591.3 314 100.0
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 1.9e-165 585.9 313 99.0
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 9.3e-165 583.6 313 98.7
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 3.0e-155 552.0 311 94.5
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 8.7e-155 550.4 311 94.5
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 1.2e-151 540.0 314 91.7
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 1.0e-142 510.4 316 86.4
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.2e-129 466.1 312 80.1
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 9.4e-125 450.7 317 77.0
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 2.1e-124 449.5 319 76.8
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 1.4e-123 446.8 316 75.9
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.3e-123 446.0 313 78.6
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 6.7e-123 444.5 316 76.3
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 4.7e-108 395.2 316 68.7
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 4.0e-99 365.5 319 64.9
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.6e-90 336.3 286 64.0
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 5.8e-66 255.4 254 60.2
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 3.5e-63 246.1 256 59.0
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 6.0e-63 245.4 333 43.8
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 7.8e-63 245.0 341 41.6
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 1.1e-61 241.1 340 42.4
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 1.5e-61 240.7 332 43.1
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 2.5e-61 240.0 314 43.0
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 7.3e-61 238.4 301 43.5
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 9.6e-61 238.0 296 45.6
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 6.2e-60 235.3 309 45.0
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.1e-59 234.6 288 46.9
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 1.8e-59 233.8 285 46.0
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 1.8e-59 233.8 314 46.8
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 3.1e-59 233.0 296 44.9
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 1.2e-58 231.1 313 41.9
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.2e-58 231.1 300 44.7
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.6e-58 229.9 296 44.3
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 3.4e-58 229.6 293 44.4
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 4.4e-58 229.2 306 43.8
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 7.6e-58 228.4 292 44.5
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 1.3e-57 227.6 307 42.3
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 2.2e-57 226.9 274 46.4
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 4.9e-57 225.7 313 41.5
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 6.4e-57 225.3 315 41.6
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 8.4e-57 224.9 297 45.5
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 2.4e-56 223.4 313 42.5
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 2.4e-56 223.4 314 44.9
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 4.2e-56 222.6 260 45.4
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.6e-55 220.7 303 42.2
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.6e-55 220.7 313 41.9
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 1.6e-55 220.7 310 41.6
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 7.9e-55 218.4 277 45.5
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 7.9e-55 218.4 308 41.9
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 7.9e-55 218.4 346 38.2
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 1.0e-54 218.0 307 44.3
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.0e-54 218.0 299 41.5
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 1.0e-54 218.0 313 40.6
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.3e-54 217.6 313 41.2
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 1.3e-54 217.6 309 41.1
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 3.9e-54 216.1 310 43.5
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 5.1e-54 215.7 306 40.8
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 5.1e-54 215.7 304 42.1
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 5.1e-54 215.7 307 40.7
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 8.7e-54 214.9 313 39.9
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.1e-53 214.5 296 43.6
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 1.9e-53 213.8 304 41.8
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.9e-53 213.8 292 42.1
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 3.3e-53 213.0 295 43.1
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 3.3e-53 213.0 313 41.9
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 5.6e-53 212.2 303 40.6
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 5.6e-53 212.2 304 42.4
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 7.4e-53 211.8 309 41.7
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 4.8e-52 209.1 319 42.3
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 4.8e-52 209.1 315 41.6
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 4.8e-52 209.1 338 37.0
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 6.2e-52 208.8 311 41.2
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 1.4e-51 207.6 312 42.6
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 1.8e-51 207.2 273 43.6
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 1.8e-51 207.2 322 41.9
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 2.4e-51 206.8 319 40.8
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 6.9e-51 205.3 312 39.7
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 6.9e-51 205.3 306 38.9
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 9.0e-51 204.9 261 44.4
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 9.0e-51 204.9 302 40.4
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 3.4e-50 203.0 306 40.5
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 4.5e-50 202.6 303 40.6
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 4.5e-50 202.6 302 40.7
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 7.6e-50 201.8 261 44.1
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 1.3e-49 201.1 312 41.7
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 3.8e-49 199.5 315 40.0
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 3.8e-49 199.5 300 39.3
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 3.8e-49 199.5 297 42.4
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 4.9e-49 199.1 316 37.3
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 1.1e-48 198.0 306 40.5
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.4e-48 197.6 311 38.9
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 3.2e-48 196.4 313 40.9
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 3.2e-48 196.4 304 41.4
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 9.3e-48 194.9 295 40.7
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 9.3e-48 194.9 308 39.0
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 1.2e-47 194.5 334 37.4
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.1e-47 193.7 231 44.6
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 2.7e-47 193.4 321 37.7
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 4.6e-47 192.6 298 39.9
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 1.0e-46 191.4 303 39.3
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 1.3e-46 191.0 227 43.6
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.8e-46 190.7 255 41.2
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 3.9e-46 189.5 275 41.8
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 8.7e-46 188.3 305 39.3
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 1.1e-45 188.0 203 55.2
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 1.5e-45 187.6 312 38.5
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.9e-45 187.2 302 37.1
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 3.3e-45 186.4 188 59.6
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.3e-44 184.5 251 41.0
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.3e-44 184.5 314 36.9
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 2.8e-44 183.3 312 37.5
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 3.7e-44 183.0 328 35.4
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 1.1e-43 181.4 248 44.8
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 1.4e-43 181.0 366 34.2
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 3.1e-43 179.9 354 36.4
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.2e-42 177.9 316 39.2
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 1.5e-42 177.6 234 41.5
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 3.4e-42 176.4 297 38.4
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 4.2e-40 169.5 315 36.5
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 7.1e-40 168.7 292 38.0
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.4e-35 154.5 234 39.3
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.8e-35 154.1 234 39.3
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 4.5e-34 149.4 306 35.0
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.3e-33 147.9 190 40.5
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 2.2e-33 147.1 304 35.2
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 3.2e-32 143.3 311 34.1
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 1.8e-30 137.5 193 38.9
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 2.3e-30 137.1 223 36.8
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 8.7e-30 135.2 284 33.8
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 8.7e-30 135.2 254 35.0
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 1.5e-29 134.4 290 31.4
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 1.9e-29 134.0 217 36.4
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.6e-28 131.0 137 44.5
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.2e-26 124.8 305 32.1
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 7.7e-26 122.1 262 34.7
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 6.5e-25 119.0 147 45.6
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 4.2e-24 116.3 219 32.0
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 7.2e-24 115.5 213 34.7
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 9.4e-24 115.2 303 28.7
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 1.4e-22 111.3 261 30.3
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 2.0e-18 97.4 181 37.0
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 2.1e-15 87.4 136 37.5
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 6.1e-15 85.9 149 39.6
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 6.1e-15 85.9 100 41.0
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 1.8e-14 84.3 199 28.6
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.4e-11 74.7 242 29.3
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 4.1e-11 73.2 89 44.9
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.6e-10 71.2 88 37.5
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 3.5e-10 70.1 119 33.6
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 2.9e-09 67.0 77 42.9
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 4.7e-07 59.7 82 42.7
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 8.8e-06 55.5 101 34.7


User provided reference genes

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