Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 5.7e-46 187.2 93 100.0
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 5.7e-46 187.2 93 100.0
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 5.7e-46 187.2 93 100.0
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 3.6e-40 167.9 93 89.2
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 6.0e-35 150.6 92 81.5
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 3.0e-34 148.3 92 80.4
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 3.0e-34 148.3 92 80.4
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 3.0e-34 148.3 92 80.4
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 3.0e-34 148.3 92 80.4
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 3.0e-34 148.3 91 79.1
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 5.0e-34 147.5 91 79.1
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 8.6e-34 146.7 92 79.3
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 2.8e-32 141.7 91 78.0
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 8.9e-31 136.7 90 76.7
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.0e-30 135.6 85 81.2
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 5.4e-28 127.5 92 69.6
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 5.4e-28 127.5 91 65.9
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.7e-27 125.2 91 63.7
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.7e-27 125.2 91 63.7
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 4.6e-27 124.4 91 67.0
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.0e-26 123.2 95 64.2
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.7e-26 122.5 89 67.4
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 1.7e-26 122.5 91 63.7
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.0e-26 121.7 91 62.6
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 3.0e-26 121.7 91 65.9
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 3.9e-26 121.3 91 63.7
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 5.1e-26 120.9 91 62.6
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 6.6e-26 120.6 92 65.2
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 6.6e-26 120.6 92 66.3
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 8.6e-26 120.2 92 64.1
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 8.6e-26 120.2 91 62.6
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.5e-25 119.4 91 61.5
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 1.5e-25 119.4 92 64.1
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 4.3e-25 117.9 91 60.4
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 4.3e-25 117.9 91 63.7
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 5.6e-25 117.5 93 65.6
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 7.3e-25 117.1 91 61.5
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 9.5e-25 116.7 91 63.7
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 9.5e-25 116.7 91 61.5
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 9.5e-25 116.7 91 60.4
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 9.5e-25 116.7 91 62.6
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.2e-24 116.3 91 63.7
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.6e-24 115.9 91 57.1
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 1.6e-24 115.9 91 59.3
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 2.1e-24 115.5 91 64.8
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 2.1e-24 115.5 91 62.6
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 2.8e-24 115.2 91 63.7
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 2.8e-24 115.2 91 63.7
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 3.6e-24 114.8 91 65.9
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 6.2e-24 114.0 91 59.3
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 6.2e-24 114.0 92 63.0
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 6.2e-24 114.0 91 63.7
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 8.1e-24 113.6 98 57.1
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 8.1e-24 113.6 92 62.0
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 1.1e-23 113.2 91 64.8
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.4e-23 112.8 91 64.8
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 1.4e-23 112.8 91 58.2
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 1.4e-23 112.8 91 62.6
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 1.8e-23 112.5 90 61.1
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 1.8e-23 112.5 92 62.0
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 1.8e-23 112.5 91 58.2
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 2.3e-23 112.1 90 58.9
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 2.3e-23 112.1 91 61.5
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 3.1e-23 111.7 93 61.3
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.0e-23 111.3 91 59.3
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.0e-23 111.3 91 59.3
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 5.2e-23 110.9 91 57.1
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 5.2e-23 110.9 91 58.2
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 6.8e-23 110.5 92 58.7
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 8.9e-23 110.2 91 62.6
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.2e-22 109.8 91 56.0
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 1.5e-22 109.4 91 63.7
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 1.5e-22 109.4 92 60.9
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 2.0e-22 109.0 91 57.1
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 3.4e-22 108.2 90 56.7
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 3.4e-22 108.2 84 61.9
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 4.4e-22 107.8 92 60.9
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 4.4e-22 107.8 91 61.5
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 5.8e-22 107.5 91 58.2
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 5.8e-22 107.5 91 60.4
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 7.6e-22 107.1 91 57.1
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 1.7e-21 105.9 92 59.8
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 1.7e-21 105.9 92 60.9
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.2e-21 105.5 91 57.1
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 2.2e-21 105.5 91 56.0
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 2.9e-21 105.1 92 59.8
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 2.9e-21 105.1 91 56.0
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 2.9e-21 105.1 91 57.1
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 3.7e-21 104.8 92 57.6
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 4.9e-21 104.4 91 58.2
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 6.4e-21 104.0 92 56.5
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 6.4e-21 104.0 91 60.4
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 8.4e-21 103.6 91 61.5
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 1.1e-20 103.2 92 58.7
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.1e-20 103.2 92 54.3
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.1e-20 103.2 91 57.1
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.4e-20 102.8 77 64.9
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.4e-20 102.8 77 64.9
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 5.4e-20 100.9 92 55.4
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 9.2e-20 100.1 91 58.2
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 1.2e-19 99.8 91 53.8
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 6.0e-19 97.4 91 54.9
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 1.7e-18 95.9 92 57.6
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 2.3e-18 95.5 66 71.2
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 3.9e-18 94.7 91 54.9
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.9e-18 94.7 91 54.9
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.9e-18 94.7 91 54.9
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 8.6e-18 93.6 91 53.8
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.1e-17 93.2 73 61.6
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 1.1e-17 93.2 85 54.1
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 5.6e-17 90.9 62 74.2
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 5.6e-17 90.9 76 64.5
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 7.3e-17 90.5 91 53.8
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 7.3e-17 90.5 89 57.3
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.2e-16 89.7 76 60.5
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 1.6e-16 89.4 72 65.3
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 1.6e-16 89.4 91 49.5
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.1e-16 89.0 93 47.3
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 3.6e-16 88.2 77 57.1
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 6.2e-16 87.4 89 56.2
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 6.2e-16 87.4 83 51.8
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 8.1e-16 87.0 99 47.5
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 8.1e-16 87.0 90 48.9
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 1.1e-15 86.7 89 53.9
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 1.4e-15 86.3 89 57.3
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 1.8e-15 85.9 76 56.6
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 2.4e-15 85.5 99 45.5
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 4.0e-15 84.7 78 56.4
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 1.2e-14 83.2 91 45.1
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 2.6e-14 82.0 128 41.4
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 3.4e-14 81.6 91 46.2
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 2.9e-13 78.6 90 42.2
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 1.9e-12 75.9 83 53.0
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 3.2e-12 75.1 83 50.6
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 9.3e-12 73.6 83 44.6
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 3.5e-11 71.6 58 60.3
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 7.8e-11 70.5 66 57.6
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.3e-10 69.7 75 50.7
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 1.3e-10 69.7 64 51.6
Cpa.g.c35589.2 Carica papaya HOM05D005070 ORTHO05D005987 3.1e-07 58.5 41 70.7
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.2e-06 56.6 48 50.0
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 1.5e-06 56.2 55 49.1
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 3.4e-06 55.1 57 47.4
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 3.4e-06 55.1 38 65.8
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 9.9e-06 53.5 51 52.9


User provided reference genes

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