Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02249 Brassica carinata HOM05D005811 ORTHO05D007070 3.3e-50 201.4 104 100.0
BolC3t19011H Brassica oleracea HOM05D005811 ORTHO05D007070 3.3e-50 201.4 104 100.0
BNapus_Darmor_BZH_scaffold_82p00020 Brassica napus HOM05D005811 ORTHO05D007070 7.3e-50 200.3 104 99.0
A06p27110 Brassica napus HOM05D005811 ORTHO05D007070 5.3e-48 194.1 104 96.2
BraA06t25647Z Brassica rapa HOM05D005811 ORTHO05D007070 5.3e-48 194.1 104 96.2
BcaB02g10703 Brassica carinata HOM05D005811 ORTHO05D007070 1.2e-44 183.0 104 90.4
Thhalv10010831m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 1.7e-38 162.5 119 74.8
Sp5g14660 Schrenkiella parvula HOM05D005811 ORTHO05D007070 4.9e-38 161.0 129 72.1
A06p20460 Brassica napus HOM05D005811 ORTHO05D007070 8.4e-38 160.2 108 84.3
BraA06t25121Z Brassica rapa HOM05D005811 ORTHO05D007070 8.4e-38 160.2 108 84.3
C03p71300 Brassica napus HOM05D005811 ORTHO05D007070 1.1e-37 159.8 108 84.3
BolC3t19415H Brassica oleracea HOM05D005811 ORTHO05D007070 1.1e-37 159.8 108 84.3
BcaB01g00949 Brassica carinata HOM05D005811 ORTHO05D007070 4.2e-37 157.9 108 83.3
Carub.0005s1331 Capsella rubella HOM05D005811 ORTHO05D007070 4.2e-37 157.9 109 79.8
BcaC01g01857 Brassica carinata HOM05D005811 ORTHO05D007070 5.4e-37 157.5 108 83.3
BcaC01g01858 Brassica carinata HOM05D005811 ORTHO05D007070 5.4e-37 157.5 108 83.3
AL5G26310 Arabidopsis lyrata HOM05D005811 ORTHO05D007070 7.9e-36 153.7 102 78.4
AT3G47070 Arabidopsis thaliana HOM05D005811 ORTHO05D007070 4.0e-32 141.4 103 72.8
Aa31LG4G15980 Aethionema arabicum HOM05D005811 ORTHO05D007070 9.0e-32 140.2 107 75.7
THA.LOC104799405 Tarenaya hassleriana HOM05D005811 ORTHO05D007070 3.1e-24 115.2 106 69.8
Thhalv10015099m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 1.3e-22 109.8 109 61.5
C09p51020 Brassica napus HOM05D005811 ORTHO05D007070 1.7e-22 109.4 108 61.1
A10p15470 Brassica napus HOM05D005811 ORTHO05D007070 2.2e-22 109.0 108 61.1
BolC9t57959H Brassica oleracea HOM05D005811 ORTHO05D007070 2.2e-22 109.0 108 61.1
BraA10t43688Z Brassica rapa HOM05D005811 ORTHO05D007070 2.2e-22 109.0 108 61.1
BcaC04g19852 Brassica carinata HOM05D005811 ORTHO05D007070 1.1e-21 106.7 108 60.2
BcaC04g19853 Brassica carinata HOM05D005811 ORTHO05D007070 1.1e-21 106.7 108 60.2
CARHR272810 Cardamine hirsuta HOM05D005811 ORTHO05D007070 2.5e-21 105.5 109 64.2
Sp6g20560 Schrenkiella parvula HOM05D005811 ORTHO05D007070 2.5e-21 105.5 109 61.5
Ciclev10029657m.g Citrus clementina HOM05D005811 ORTHO05D007070 1.9e-18 95.9 104 58.7
Manes.02G121312 Manihot esculenta HOM05D005811 ORTHO05D007070 1.6e-17 92.8 103 53.4
Gorai.009G093000 Gossypium raimondii HOM05D005811 ORTHO05D007070 4.8e-17 91.3 102 52.0
Lj6g0027141 Lotus japonicus HOM05D005811 ORTHO05D007070 6.3e-17 90.9 96 53.1
Thecc.09G304900 Theobroma cacao HOM05D005811 ORTHO05D007070 1.8e-16 89.4 105 52.4
Gohir.D05G090500 Gossypium hirsutum HOM05D005811 ORTHO05D007070 2.4e-16 89.0 102 51.0
Sc06g0008440 Simmondsia chinensis HOM05D005811 ORTHO05D007070 2.4e-16 89.0 103 56.3
Duzib170G0110 Durio zibethinus HOM05D005811 ORTHO05D007070 4.1e-16 88.2 103 49.5
Gohir.A05G089600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 6.9e-16 87.4 102 52.0
Cpa.g.sc112.49 Carica papaya HOM05D005811 ORTHO05D007070 9.0e-16 87.0 103 53.4
Carub.0008s1950 Capsella rubella HOM05D005811 ORTHO05D007070 1.5e-15 86.3 59 76.3
TPR.G13272 Trifolium pratense HOM05D005811 ORTHO05D007070 2.0e-15 85.9 98 53.1
Duzib150G1392 Durio zibethinus HOM05D005811 ORTHO05D007070 2.6e-15 85.5 95 52.6
Duzib168G1366 Durio zibethinus HOM05D005811 ORTHO05D007070 3.4e-15 85.1 104 51.0
Glyma.18G065900 Glycine max HOM05D005811 ORTHO05D007070 4.5e-15 84.7 95 52.6
VMungo0540G1301 Vigna mungo HOM05D005811 ORTHO05D007070 1.3e-14 83.2 95 51.6
Haze_24267 Corylus avellana HOM05D005811 ORTHO05D007070 2.2e-14 82.4 102 50.0
TWI75G0861 Tripterygium wilfordii HOM05D005811 ORTHO05D007070 2.9e-14 82.0 97 51.5
CiPaw.13G080400 Carya illinoinensis HOM05D005811 ORTHO05D007070 5.0e-14 81.3 96 51.0
Sabra16G0151600 Salix brachista HOM05D005811 ORTHO05D007070 1.4e-13 79.7 95 49.5
Potri.001G249600 Populus trichocarpa HOM05D005811 ORTHO05D007070 2.5e-13 79.0 95 49.5
Ah.15g099770 Amaranthus hybridus HOM05D005811 ORTHO05D007070 4.2e-13 78.2 94 46.8
Phvul.006G065100 Phaseolus vulgaris HOM05D005811 ORTHO05D007070 4.2e-13 78.2 95 49.5
Psat2g059240 Pisum sativum HOM05D005811 ORTHO05D007070 5.5e-13 77.8 104 49.0
arahy.Tifrunner.gnm1.ann1.8DRC0W Arachis hypogaea HOM05D005811 ORTHO05D007070 7.2e-13 77.4 63 65.1
arahy.Tifrunner.gnm1.ann1.AMG8UC Arachis hypogaea HOM05D005811 ORTHO05D007070 7.2e-13 77.4 63 65.1
CsaV3_6G016350 Cucumis sativus L. HOM05D005811 ORTHO05D007070 7.2e-13 77.4 96 47.9
Sed0022374 Sechium edule HOM05D005811 ORTHO05D007070 9.4e-13 77.0 95 49.5
Solyc06g076790.1 Solanum lycopersicum HOM05D005811 ORTHO05D007070 1.2e-12 76.6 111 47.7
PGR102G1689 Punica granatum HOM05D005811 ORTHO05D007070 2.1e-12 75.9 95 47.4
ClCG02G019670 Citrullus lanatus HOM05D005811 ORTHO05D007070 3.6e-12 75.1 96 47.9
Nitab4.5_0000010g0190 Nicotiana tabacum HOM05D005811 ORTHO05D007070 4.6e-12 74.7 84 51.2
Nitab4.5_0000102g0070 Nicotiana tabacum HOM05D005811 ORTHO05D007070 4.6e-12 74.7 86 54.7
CAN.G394.109 Capsicum annuum HOM05D005811 ORTHO05D007070 6.1e-12 74.3 91 49.5
Sabra09G0031000 Salix brachista HOM05D005811 ORTHO05D007070 6.1e-12 74.3 96 49.0
MBI06_g39483_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 7.9e-12 73.9 103 46.6
MBI06_g42850_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 7.9e-12 73.9 103 46.6
TAR369G0215 Trochodendron aralioides HOM05D005811 ORTHO05D007070 7.9e-12 73.9 103 47.6
Cfa011662 Carpinus fangiana HOM05D005811 ORTHO05D007070 1.0e-11 73.6 96 49.0
Nn2g11406 Nelumbo nucifera HOM05D005811 ORTHO05D007070 1.0e-11 73.6 103 48.5
Prupe.6G060300 Prunus persica HOM05D005811 ORTHO05D007070 1.4e-11 73.2 100 50.0
MSTRG.18574 Avicennia marina HOM05D005811 ORTHO05D007070 1.8e-11 72.8 87 52.9
MELO3C025865.2 Cucumis melo HOM05D005811 ORTHO05D007070 1.8e-11 72.8 96 50.0
LjContig00155g0018843 Lotus japonicus HOM05D005811 ORTHO05D007070 1.8e-11 72.8 92 48.9
Gorai.003G124000 Gossypium raimondii HOM05D005811 ORTHO05D007070 2.3e-11 72.4 103 45.6
Manes.01G163700 Manihot esculenta HOM05D005811 ORTHO05D007070 2.3e-11 72.4 103 48.5
Nn2g13640 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.3e-11 72.4 104 48.1
Hund04884 Selenicereus undatus HOM05D004319 ORTHO05D007070 2.3e-11 72.4 90 54.4
Gohir.D03G117600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 3.9e-11 71.6 103 45.6
MBI14_g04429_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 3.9e-11 71.6 96 47.9
Nitab4.5_0004144g0020 Nicotiana tabacum HOM05D005811 ORTHO05D007070 3.9e-11 71.6 85 52.9
QL01p037422 Quercus lobata HOM05D005811 ORTHO05D007070 3.9e-11 71.6 62 56.5
DCAR_018965 Daucus carota HOM05D005811 ORTHO05D007070 5.1e-11 71.2 113 45.1
Gohir.A03G049700 Gossypium hirsutum HOM05D005811 ORTHO05D007070 5.1e-11 71.2 95 47.4
Lalb_Chr04g0252281 Lupinus albus HOM05D005811 ORTHO05D007070 5.1e-11 71.2 96 47.9
ATR0618G101 Amborella trichopoda HOM05D005811 ORTHO05D007070 8.8e-11 70.5 103 43.7
Lalb_Chr04g0252321 Lupinus albus HOM05D005811 ORTHO05D007070 8.8e-11 70.5 96 46.9
Medtr5g069990 Medicago truncatula HOM05D005811 ORTHO05D007070 8.8e-11 70.5 112 45.5
CANSAT54G2446 Cannabis sativa HOM05D005811 ORTHO05D007070 1.1e-10 70.1 97 51.5
MD03G1073700 Malus domestica HOM05D005811 ORTHO05D007070 1.1e-10 70.1 107 46.7
Potri.009G043600 Populus trichocarpa HOM05D005811 ORTHO05D007070 2.0e-10 69.3 60 61.7
Ca_05589_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 2.5e-10 68.9 96 46.9
Dinv28620 Davidia involucrata HOM05D005811 ORTHO05D007070 2.5e-10 68.9 98 45.9
MD11G1079700 Malus domestica HOM05D005811 ORTHO05D007070 3.3e-10 68.6 101 47.5
AUR62001678 Chenopodium quinoa HOM05D005811 ORTHO05D007070 7.4e-10 67.4 96 45.8
Peaxi162Scf01058g00001 Petunia axillaris HOM05D005811 ORTHO05D007070 7.4e-10 67.4 73 56.2
PGSC0003DMG400030440 Solanum tuberosum HOM05D005811 ORTHO05D007070 7.4e-10 67.4 74 52.7
AUR62020102 Chenopodium quinoa HOM05D005811 ORTHO05D007070 9.7e-10 67.0 96 45.8
Glyma.11G176000 Glycine max HOM05D005811 ORTHO05D007070 1.3e-09 66.6 95 46.3
SGA_v2.0_scaffold443G51693 Striga asiatica HOM05D005811 ORTHO05D007070 1.3e-09 66.6 47 70.2
EL10Ac7g16131 Beta vulgaris HOM05D005811 ORTHO05D007070 1.7e-09 66.2 95 43.2
Actinidia34450 Actinidia chinensis HOM05D000731 ORTHO05D003068 3.7e-09 65.1 97 45.4
Migut.D02091 Erythranthe guttata HOM05D005811 ORTHO05D007070 3.7e-09 65.1 90 48.9
Lsat_1_v5_gn_8_71220 Lactuca sativa HOM05D005811 ORTHO05D007070 6.3e-09 64.3 91 46.2
unitig_899.g15251 Utricularia gibba HOM05D005811 ORTHO05D007070 1.4e-08 63.2 46 71.7
RcHm_v2.0_Chr5g0068741 Rosa chinensis HOM05D005811 ORTHO05D007070 4.1e-08 61.6 109 43.1
Aqoxy2G00950 Aquilegia oxysepala HOM05D005811 ORTHO05D007070 5.3e-08 61.2 103 39.8
CiPaw.14G060800 Carya illinoinensis HOM05D005811 ORTHO05D007070 5.3e-08 61.2 97 42.3
PGSC0003DMG400004165 Solanum tuberosum HOM05D005811 ORTHO05D007070 5.3e-08 61.2 85 44.7
Dinv14462 Davidia involucrata HOM05D005811 ORTHO05D007070 9.1e-08 60.5 62 53.2
Medtr3g462990 Medicago truncatula HOM05D005811 ORTHO05D007070 9.1e-08 60.5 64 56.2
HPP92_012634 Vanilla planifolia HOM05D005811 ORTHO05D007070 9.1e-08 60.5 107 43.0
MBI05_g30574_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 1.5e-07 59.7 54 55.6
unitig_746.g26735 Utricularia gibba HOM05D005811 ORTHO05D007070 4.5e-07 58.2 74 51.4
Lalb_Chr10g0103291 Lupinus albus HOM05D005811 ORTHO05D007070 5.9e-07 57.8 61 49.2
Ca_14913_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 7.7e-07 57.4 64 50.0
FvH4_3g38260 Fragaria vesca HOM05D005811 ORTHO05D007070 7.7e-07 57.4 67 46.3
FAN11G0366 Fragaria x ananassa HOM05D005811 ORTHO05D007070 7.7e-07 57.4 67 46.3
Sopen06g033180 Solanum pennellii HOM05D005811 ORTHO05D007070 7.7e-07 57.4 111 40.5
FAN21G0983 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.3e-06 56.6 69 44.9
FAN16G2097 Fragaria x ananassa HOM05D005811 ORTHO05D007070 2.2e-06 55.8 67 44.8
Nn3g20363 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.2e-06 55.8 65 47.7
Hma1.2p1_1010F.1_g247360 Hydrangea macrophylla HOM05D005811 ORTHO05D007070 3.8e-06 55.1 97 43.3
Nn4g22044 Nelumbo nucifera HOM05D005811 ORTHO05D007070 6.5e-06 54.3 94 39.4


User provided reference genes

Program Settings