Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02233 Brassica carinata HOM05D018064 ORTHO05D040025 2.5e-33 144.8 72 100.0
BcaC05g27980 Brassica carinata HOM05D018064 ORTHO05D032092 1.3e-26 122.5 63 93.7
C05p39890 Brassica napus HOM05D018064 ORTHO05D032092 1.3e-21 105.9 54 92.6
C09p37960 Brassica napus HOM05D018064 ORTHO05D101331 2.3e-18 95.1 45 100.0
BolC9t56633H Brassica oleracea HOM05D018064 ORTHO05D040025 2.3e-18 95.1 48 93.8
BcaC04g20916 Brassica carinata HOM05D000262 ORTHO05D000300 8.7e-18 93.2 44 100.0
Aa31LG2G2440 Aethionema arabicum HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
AL2G22080 Arabidopsis lyrata HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
AT1G65410 Arabidopsis thaliana HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
BcaB05g24111 Brassica carinata HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
BcaC03g14702 Brassica carinata HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
A02p13190 Brassica napus HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
C02p21350 Brassica napus HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
BolC2t08274H Brassica oleracea HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
BraA02t06375Z Brassica rapa HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
Carub.0002s1112 Capsella rubella HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
Thhalv10018868m.g Eutrema salsugineum HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
Sp5g20140 Schrenkiella parvula HOM05D005982 ORTHO05D007891 6.3e-08 60.5 33 87.9
CANSAT54G1987 Cannabis sativa HOM05D005982 ORTHO05D007891 1.4e-07 59.3 33 84.8
CiPaw.07G078800 Carya illinoinensis HOM05D005982 ORTHO05D007891 1.4e-07 59.3 33 84.8
Ciclev10012081m.g Citrus clementina HOM05D005982 ORTHO05D007891 1.4e-07 59.3 33 84.8
CARHR057060 Cardamine hirsuta HOM05D005982 ORTHO05D007891 1.8e-07 58.9 33 84.8
Sp7g05710 Schrenkiella parvula HOM05D005982 ORTHO05D007891 1.8e-07 58.9 33 84.8
Atru.chr12.2111 Acer truncatum HOM05D005982 ORTHO05D007891 2.4e-07 58.5 33 84.8
FvH4_6g00670 Fragaria vesca HOM05D005982 ORTHO05D007891 2.4e-07 58.5 33 84.8
FAN09G4525 Fragaria x ananassa HOM05D005982 ORTHO05D007891 2.4e-07 58.5 33 84.8
FAN14G5963 Fragaria x ananassa HOM05D005982 ORTHO05D007891 2.4e-07 58.5 33 84.8
Lalb_Chr19g0126741 Lupinus albus HOM05D005982 ORTHO05D007891 3.1e-07 58.2 33 81.8
TWI75G0896 Tripterygium wilfordii HOM05D005982 ORTHO05D007891 3.1e-07 58.2 33 84.8
Cfa006274 Carpinus fangiana HOM05D005982 ORTHO05D007891 4.1e-07 57.8 33 81.8
Haze_04537 Corylus avellana HOM05D005982 ORTHO05D007891 4.1e-07 57.8 33 81.8
Lalb_Chr03g0038371 Lupinus albus HOM05D005982 ORTHO05D007891 4.1e-07 57.8 33 81.8
THA.LOC104821984 Tarenaya hassleriana HOM05D005982 ORTHO05D007891 4.1e-07 57.8 33 81.8
SEGI_33204 Sequoiadendron giganteum HOM05D005982 ORTHO05D007891 5.3e-07 57.4 33 84.8
Glyma.09G251900 Glycine max HOM05D005982 ORTHO05D007891 6.9e-07 57.0 33 78.8
Glyma.18G240700 Glycine max HOM05D005982 ORTHO05D007891 6.9e-07 57.0 33 78.8
Gohir.D08G244900 Gossypium hirsutum HOM05D005982 ORTHO05D007891 6.9e-07 57.0 48 60.4
Psat3g104760 Pisum sativum HOM05D005982 ORTHO05D007891 6.9e-07 57.0 33 78.8
Ca_07966_v3 Cicer arietinum L. HOM05D005982 ORTHO05D007891 9.1e-07 56.6 33 78.8
MD12G1259300 Malus domestica HOM05D005982 ORTHO05D007891 9.1e-07 56.6 33 78.8
TPR.G28447 Trifolium pratense HOM05D005982 ORTHO05D007891 9.1e-07 56.6 33 78.8
COL.COLO4_27407 Corchorus olitorius HOM05D005982 ORTHO05D007891 1.2e-06 56.2 33 78.8
Eucgr.B01388 Eucalyptus grandis HOM05D005982 ORTHO05D007891 1.2e-06 56.2 33 78.8
MD04G1243700 Malus domestica HOM05D005982 ORTHO05D007891 1.2e-06 56.2 33 78.8
RcHm_v2.0_Chr3g0448111 Rosa chinensis HOM05D005982 ORTHO05D007891 1.2e-06 56.2 33 81.8
Sabra14G0103400 Salix brachista HOM05D005982 ORTHO05D007891 1.2e-06 56.2 33 81.8
Dinv04347 Davidia involucrata HOM05D005982 ORTHO05D007891 1.5e-06 55.8 33 78.8
Gohir.A08G224566 Gossypium hirsutum HOM05D005982 ORTHO05D007891 1.5e-06 55.8 33 78.8
Gorai.004G261400 Gossypium raimondii HOM05D005982 ORTHO05D007891 1.5e-06 55.8 33 78.8
Medtr7g079540 Medicago truncatula HOM05D005982 ORTHO05D007891 1.5e-06 55.8 33 78.8
Phvul.008G055500 Phaseolus vulgaris HOM05D005982 ORTHO05D007891 1.5e-06 55.8 33 75.8
Thecc.05G201800 Theobroma cacao HOM05D005982 ORTHO05D007891 1.5e-06 55.8 33 75.8
TAR362G0600 Trochodendron aralioides HOM05D005982 ORTHO05D007891 1.5e-06 55.8 33 78.8
Cpa.g.sc123.7 Carica papaya HOM05D005982 ORTHO05D007891 2.0e-06 55.5 33 75.8
ClCG03G010900 Citrullus lanatus HOM05D005982 ORTHO05D007891 2.0e-06 55.5 33 78.8
CsaV3_1G044650 Cucumis sativus L. HOM05D005982 ORTHO05D007891 2.0e-06 55.5 33 78.8
FAN05G0974 Fragaria x ananassa HOM05D005982 ORTHO05D007891 2.0e-06 55.5 33 78.8
PGR031G2177 Punica granatum HOM05D005982 ORTHO05D007891 2.0e-06 55.5 33 78.8
Sed0000119 Sechium edule HOM05D005982 ORTHO05D007891 2.0e-06 55.5 33 78.8
SGA_v2.0_scaffold105G30407 Striga asiatica HOM05D005982 ORTHO05D007891 2.0e-06 55.5 33 78.8
SGA_v2.0_scaffold340G49298 Striga asiatica HOM05D005982 ORTHO05D007891 2.0e-06 55.5 33 78.8
VMungo1383G2145 Vigna mungo HOM05D005982 ORTHO05D007891 2.0e-06 55.5 33 78.8
MELO3C010074.2 Cucumis melo HOM05D005982 ORTHO05D007891 2.6e-06 55.1 33 78.8
Prupe.6G359900 Prunus persica HOM05D005982 ORTHO05D007891 3.4e-06 54.7 33 78.8
QL01p045609 Quercus lobata HOM05D005982 ORTHO05D007891 3.4e-06 54.7 33 75.8
vmacro00703 Vaccinium macrocarpon HOM05D005982 ORTHO05D007891 3.4e-06 54.7 33 75.8
Duzib128G1048 Durio zibethinus HOM05D005982 ORTHO05D007891 4.5e-06 54.3 33 75.8
Migut.F01882 Erythranthe guttata HOM05D005982 ORTHO05D007891 4.5e-06 54.3 33 75.8
Nn4g26684 Nelumbo nucifera HOM05D005982 ORTHO05D007891 4.5e-06 54.3 33 75.8
PSO017G3475 Papaver somniferum HOM05D005982 ORTHO05D007891 4.5e-06 54.3 33 75.8
PSO675G2550 Papaver somniferum HOM05D005982 ORTHO05D007891 4.5e-06 54.3 33 75.8
Rhsim09G0010600 Rhododendron simsii HOM05D005982 ORTHO05D007891 4.5e-06 54.3 33 75.8
AUR62000331 Chenopodium quinoa HOM05D005982 ORTHO05D007891 5.9e-06 53.9 35 82.9
DCAR_001501 Daucus carota HOM05D005982 ORTHO05D007891 5.9e-06 53.9 33 72.7
unitig_62.g23780 Utricularia gibba HOM05D005982 ORTHO05D007891 5.9e-06 53.9 33 78.8
arahy.Tifrunner.gnm1.ann1.9114DU Arachis hypogaea HOM05D005982 ORTHO05D007891 7.7e-06 53.5 33 75.8
arahy.Tifrunner.gnm1.ann1.9D9UM2 Arachis hypogaea HOM05D005982 ORTHO05D007891 7.7e-06 53.5 33 75.8
Manes.08G104700 Manihot esculenta HOM05D005982 ORTHO05D007891 7.7e-06 53.5 33 72.7
Potri.014G137000 Populus trichocarpa HOM05D005982 ORTHO05D007891 7.7e-06 53.5 33 78.8


User provided reference genes

Program Settings