Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 0.0e+00 1456.0 721 100.0
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 0.0e+00 1456.0 721 100.0
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 0.0e+00 1433.7 726 98.3
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 0.0e+00 1428.3 722 98.3
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 0.0e+00 1370.5 722 94.7
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 0.0e+00 1361.7 739 93.2
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 0.0e+00 1236.1 726 86.2
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 0.0e+00 1232.6 732 85.2
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 0.0e+00 1226.1 722 84.6
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 0.0e+00 1214.9 726 83.7
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 0.0e+00 1080.1 730 74.5
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 5.4e-301 1037.3 606 85.0
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 4.6e-292 1007.7 736 69.4
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 4.9e-270 934.5 708 65.8
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 7.1e-269 930.6 725 65.1
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 9.3e-269 930.2 707 65.6
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 6.9e-264 914.1 725 63.0
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 3.4e-263 911.8 725 62.8
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 4.5e-263 911.4 708 65.4
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 5.8e-263 911.0 718 62.5
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 2.5e-261 905.6 725 62.8
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 1.8e-259 899.4 725 63.2
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 9.6e-258 893.6 713 62.4
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 2.8e-257 892.1 707 62.8
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 5.8e-255 884.4 707 61.5
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 2.5e-253 879.0 717 61.9
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 2.1e-252 875.9 708 61.7
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 4.6e-252 874.8 708 61.7
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 2.3e-251 872.5 725 61.9
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 8.7e-251 870.5 730 60.5
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 4.3e-250 868.2 719 60.5
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 7.4e-250 867.5 722 60.0
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 1.6e-249 866.3 682 63.2
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 2.2e-249 865.9 725 60.8
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 2.8e-249 865.5 712 61.7
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 4.8e-249 864.8 708 61.2
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 4.8e-249 864.8 708 61.0
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 4.8e-249 864.8 711 61.5
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 6.3e-249 864.4 709 61.2
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 6.3e-249 864.4 709 61.2
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.8e-248 862.8 708 61.0
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 1.8e-248 862.8 707 60.3
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 5.3e-248 861.3 712 60.3
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.3e-248 861.3 708 61.0
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 9.0e-248 860.5 730 59.7
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.6e-247 859.0 708 60.9
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.2e-246 855.9 705 60.9
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 1.1e-245 853.6 710 60.8
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 2.5e-245 852.4 707 61.0
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 9.4e-245 850.5 713 60.4
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 3.6e-244 848.6 705 61.0
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 6.1e-244 847.8 709 60.2
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 3.0e-243 845.5 708 60.0
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 3.0e-243 845.5 732 59.0
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 5.1e-243 844.7 705 60.6
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 6.7e-243 844.3 707 60.1
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 8.8e-243 844.0 733 58.7
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 2.0e-242 842.8 712 60.0
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 7.4e-242 840.9 731 58.0
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 8.2e-241 837.4 708 59.6
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 4.1e-240 835.1 716 58.9
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 5.3e-240 834.7 708 58.8
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 9.1e-240 833.9 481 86.1
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 9.1e-240 833.9 707 60.4
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 2.0e-239 832.8 716 58.9
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 2.6e-239 832.4 711 58.8
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 1.7e-238 829.7 712 58.4
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 6.5e-238 827.8 692 60.5
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 9.4e-237 823.9 739 56.8
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 7.9e-236 820.8 764 55.0
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 1.1e-234 817.0 709 58.3
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 2.0e-234 816.2 709 58.4
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 3.3e-234 815.5 722 57.8
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 7.0e-232 807.7 731 58.4
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 2.2e-230 802.7 703 57.2
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 3.8e-230 802.0 713 56.9
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 7.2e-229 797.7 731 55.7
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 8.8e-227 790.8 711 56.7
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 1.1e-224 783.9 689 57.5
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 3.1e-224 782.3 725 55.7
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 3.0e-219 765.8 817 50.4
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 2.8e-217 759.2 528 69.5
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 4.2e-213 745.3 582 64.1
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 4.2e-213 745.3 710 55.1
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 8.0e-212 741.1 725 54.5
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 2.9e-206 722.6 595 60.8
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 3.0e-203 712.6 662 55.3
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 6.8e-203 711.4 618 58.3
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 7.5e-202 708.0 714 53.5
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 6.4e-201 704.9 737 51.8
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 3.1e-187 659.4 726 49.7
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 5.8e-178 628.6 718 47.5
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 5.4e-168 595.5 442 66.3
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 6.6e-166 588.6 624 48.4
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 5.6e-165 585.5 450 64.0
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 4.2e-160 569.3 445 60.4
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 9.9e-154 548.1 734 41.8
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 5.5e-152 542.3 737 41.9
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.9e-149 533.9 475 56.2
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 3.7e-148 529.6 402 65.2
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 4.0e-147 526.2 428 65.0
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 1.3e-140 504.6 412 60.9
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 1.4e-139 501.1 701 41.2
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 5.3e-139 499.2 478 54.0
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 1.0e-129 468.4 404 60.6
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 2.6e-122 443.7 747 38.3
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 3.0e-118 430.3 482 49.4
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 5.3e-115 419.5 681 38.2
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 3.5e-114 416.8 749 35.4
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 6.5e-105 386.0 380 54.7
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 8.5e-105 385.6 293 66.9
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 7.7e-98 362.5 381 51.2
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 6.6e-81 306.2 311 51.8
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 8.6e-81 305.8 184 78.3
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 7.8e-74 282.7 317 46.4
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 2.3e-73 281.2 206 67.5
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 9.3e-51 206.1 241 46.5
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 8.1e-39 166.4 108 74.1
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.8e-38 165.2 142 64.1
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.1e-35 153.3 314 32.5
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 2.7e-34 151.4 150 52.0
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.1e-32 146.0 93 73.1
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 1.2e-29 136.0 535 25.8
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.7e-28 132.1 152 48.7
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 1.4e-27 129.0 808 22.0
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 2.4e-22 111.7 161 39.8
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.1e-22 110.9 268 29.1
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 4.5e-21 107.5 113 45.1
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 1.2e-18 99.4 124 45.2
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 2.7e-18 98.2 64 68.8
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.3e-17 95.1 84 56.0
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 2.3e-17 95.1 115 54.8
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.0e-17 94.7 82 56.1
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 4.1e-14 84.3 66 69.7
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 2.0e-13 82.0 74 56.8
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 2.0e-13 82.0 51 78.4
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 5.9e-13 80.5 113 46.9
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.0e-12 79.7 113 43.4
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 6.5e-12 77.0 61 67.2
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 1.9e-11 75.5 51 66.7
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 9.4e-11 73.2 56 69.6
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 3.0e-09 68.2 45 71.1


User provided reference genes

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