Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 4.9e-71 271.2 150 100.0
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 4.9e-71 271.2 150 100.0
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 4.9e-71 271.2 150 100.0
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 1.2e-69 266.5 149 98.7
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 7.8e-69 263.8 149 98.0
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 1.5e-67 259.6 150 96.7
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 5.6e-59 231.1 152 86.2
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 7.6e-48 194.1 160 76.9
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 3.8e-47 191.8 159 71.7
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 3.8e-47 191.8 158 77.2
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 1.7e-44 183.0 163 73.6
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 6.2e-42 174.5 160 71.9
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 4.5e-40 168.3 147 70.7
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 2.6e-32 142.5 114 69.3
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 1.6e-29 133.3 140 61.4
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 2.7e-29 132.5 140 57.9
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 6.0e-29 131.3 124 63.7
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 1.0e-28 130.6 101 76.2
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 1.0e-28 130.6 154 59.7
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 1.8e-28 129.8 158 59.5
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 2.3e-28 129.4 159 57.9
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 3.9e-28 128.6 107 63.6
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 3.9e-28 128.6 155 57.4
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 5.1e-28 128.3 145 56.6
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 6.7e-28 127.9 148 59.5
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 1.1e-27 127.1 121 65.3
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 1.5e-27 126.7 160 56.2
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 1.5e-27 126.7 161 55.9
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 1.9e-27 126.3 104 72.1
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 2.5e-27 125.9 162 53.1
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 2.5e-27 125.9 162 53.1
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 2.5e-27 125.9 167 54.5
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 2.5e-27 125.9 139 58.3
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 2.5e-27 125.9 161 52.2
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 3.3e-27 125.6 145 58.6
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 5.6e-27 124.8 161 55.3
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 5.6e-27 124.8 161 55.3
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 7.4e-27 124.4 114 64.9
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 7.4e-27 124.4 101 70.3
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 7.4e-27 124.4 101 70.3
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 9.6e-27 124.0 100 70.0
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 9.6e-27 124.0 123 61.8
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 1.6e-26 123.2 151 57.6
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 1.6e-26 123.2 157 51.0
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 1.6e-26 123.2 104 68.3
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 1.6e-26 123.2 111 64.9
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 2.1e-26 122.9 98 64.3
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 2.1e-26 122.9 104 67.3
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 2.1e-26 122.9 96 72.9
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 2.8e-26 122.5 149 53.7
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 4.8e-26 121.7 102 70.6
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 4.8e-26 121.7 101 69.3
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 4.8e-26 121.7 155 54.2
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 6.2e-26 121.3 100 71.0
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 6.2e-26 121.3 101 69.3
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 1.4e-25 120.2 155 53.5
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 1.4e-25 120.2 98 73.5
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 1.8e-25 119.8 118 62.7
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 1.8e-25 119.8 82 68.3
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 1.8e-25 119.8 98 72.4
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 1.8e-25 119.8 98 72.4
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 2.4e-25 119.4 108 63.9
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 4.0e-25 118.6 124 51.6
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 4.0e-25 118.6 98 69.4
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 4.0e-25 118.6 132 53.8
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 4.0e-25 118.6 145 46.9
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 9.0e-25 117.5 98 69.4
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 9.0e-25 117.5 110 63.6
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 1.2e-24 117.1 100 69.0
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 1.5e-24 116.7 82 65.9
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 2.0e-24 116.3 82 70.7
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 2.6e-24 115.9 147 53.1
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 2.6e-24 115.9 144 55.6
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 2.6e-24 115.9 82 64.6
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 3.4e-24 115.5 82 67.1
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 5.8e-24 114.8 82 64.6
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 1.3e-23 113.6 64 76.6
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 3.8e-23 112.1 148 49.3
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 8.4e-23 110.9 82 59.8
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 1.1e-22 110.5 141 51.8
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 1.4e-22 110.2 130 47.7
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 5.5e-22 108.2 164 51.2
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 5.5e-22 108.2 124 46.0
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 7.1e-22 107.8 166 50.6
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 3.0e-20 102.4 128 50.8
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 3.3e-19 99.0 111 55.0
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 7.4e-19 97.8 82 56.1
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 4.8e-18 95.1 112 53.6
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 1.5e-16 90.1 209 34.4
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 1.5e-16 90.1 119 55.5
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 1.4e-14 83.6 126 42.9
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 1.6e-13 80.1 59 69.5
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 6.1e-13 78.2 40 75.0
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 1.9e-11 73.2 56 66.1
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 7.4e-11 71.2 70 52.9
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 1.7e-10 70.1 58 65.5
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 1.4e-06 57.0 36 72.2


User provided reference genes

Program Settings