Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02070 Brassica carinata HOM05D002092 ORTHO05D018501 1.7e-114 416.0 211 100.0
A10p09500 Brassica napus HOM05D002092 ORTHO05D018501 6.2e-64 248.1 205 69.8
BraA10t43025Z Brassica rapa HOM05D002092 ORTHO05D018501 1.4e-63 246.9 227 64.8
C06p39650 Brassica napus HOM05D002092 ORTHO05D018501 9.9e-62 240.7 217 63.6
A04p00660 Brassica napus HOM05D000494 ORTHO05D000556 8.7e-50 201.1 211 56.9
BraA04t15785Z Brassica rapa HOM05D000494 ORTHO05D000556 6.2e-48 194.9 227 52.9
BcaC08g46066 Brassica carinata HOM05D002092 ORTHO05D018501 2.4e-39 166.4 134 64.2
Aa31sc279G30 Aethionema arabicum HOM05D002092 ORTHO05D007041 3.9e-34 149.1 108 72.2
BcaC03g17690 Brassica carinata HOM05D002092 ORTHO05D007041 3.9e-34 149.1 108 71.3
A02p37830 Brassica napus HOM05D002092 ORTHO05D007041 3.9e-34 149.1 108 71.3
C02p56990 Brassica napus HOM05D002092 ORTHO05D007041 3.9e-34 149.1 108 71.3
BolC2t11769H Brassica oleracea HOM05D002092 ORTHO05D007041 3.9e-34 149.1 108 71.3
BraA02t08765Z Brassica rapa HOM05D002092 ORTHO05D007041 3.9e-34 149.1 108 71.3
CARHR284570 Cardamine hirsuta HOM05D002092 ORTHO05D007041 8.8e-34 147.9 108 70.4
A06p38670 Brassica napus HOM05D002092 ORTHO05D007041 1.1e-33 147.5 108 70.4
BraA06t26781Z Brassica rapa HOM05D002092 ORTHO05D007041 1.1e-33 147.5 108 70.4
BcaB07g34209 Brassica carinata HOM05D002092 ORTHO05D007041 2.0e-33 146.7 108 70.4
BcaC06g30737 Brassica carinata HOM05D002092 ORTHO05D007041 2.0e-33 146.7 108 70.4
C07p39590 Brassica napus HOM05D002092 ORTHO05D007041 2.0e-33 146.7 108 70.4
BolC7t44483H Brassica oleracea HOM05D002092 ORTHO05D007041 2.0e-33 146.7 108 70.4
Carub.0008s0871 Capsella rubella HOM05D002092 ORTHO05D007041 2.0e-33 146.7 108 70.4
Sp2g19340 Schrenkiella parvula HOM05D002092 ORTHO05D007041 2.0e-33 146.7 108 70.4
AL8G22200 Arabidopsis lyrata HOM05D002092 ORTHO05D007041 4.3e-33 145.6 108 69.4
AT5G48960 Arabidopsis thaliana HOM05D002092 ORTHO05D007041 4.3e-33 145.6 108 69.4
Thhalv10003802m.g Eutrema salsugineum HOM05D002092 ORTHO05D007041 4.3e-33 145.6 108 69.4
Duzib212G0591 Durio zibethinus HOM05D002092 ORTHO05D007041 2.0e-30 136.7 110 63.6
RcHm_v2.0_Chr4g0427701 Rosa chinensis HOM05D002092 ORTHO05D007041 4.5e-30 135.6 110 62.7
Thecc.04G313900 Theobroma cacao HOM05D002092 ORTHO05D007041 4.5e-30 135.6 110 62.7
Ciclev10004546m.g Citrus clementina HOM05D002092 ORTHO05D007041 7.7e-30 134.8 110 62.7
THA.LOC104818932 Tarenaya hassleriana HOM05D002092 ORTHO05D007041 7.7e-30 134.8 108 64.8
Manes.03G212300 Manihot esculenta HOM05D002092 ORTHO05D007041 1.0e-29 134.4 110 62.7
THA.LOC104827346 Tarenaya hassleriana HOM05D002092 ORTHO05D007041 1.0e-29 134.4 131 55.7
CiPaw.01G128500 Carya illinoinensis HOM05D002092 ORTHO05D007041 1.3e-29 134.0 110 62.7
FAN17G1215 Fragaria x ananassa HOM05D002092 ORTHO05D007041 1.3e-29 134.0 110 61.8
Gohir.A02G059000 Gossypium hirsutum HOM05D002092 ORTHO05D007041 1.3e-29 134.0 110 61.8
Gorai.005G073300 Gossypium raimondii HOM05D002092 ORTHO05D007041 1.3e-29 134.0 110 61.8
Nn4g25366 Nelumbo nucifera HOM05D002092 ORTHO05D007041 1.3e-29 134.0 110 62.7
Atru.chr4.3168 Acer truncatum HOM05D002092 ORTHO05D007041 1.7e-29 133.7 110 61.8
C03p68890 Brassica napus HOM05D000278 ORTHO05D103704 1.7e-29 133.7 235 42.6
Potri.010G002900 Populus trichocarpa HOM05D002092 ORTHO05D007041 2.2e-29 133.3 110 61.8
Sabra10G0002300 Salix brachista HOM05D002092 ORTHO05D007041 2.2e-29 133.3 110 61.8
Sed0019064 Sechium edule HOM05D002092 ORTHO05D007041 2.2e-29 133.3 110 61.8
CANSAT78G1398 Cannabis sativa HOM05D002092 ORTHO05D007041 2.9e-29 132.9 108 62.0
Actinidia18512 Actinidia chinensis HOM05D002092 ORTHO05D007041 5.0e-29 132.1 110 62.7
EL10Ac3g06236 Beta vulgaris HOM05D002092 ORTHO05D007041 5.0e-29 132.1 108 63.0
AUR62002541 Chenopodium quinoa HOM05D002092 ORTHO05D007041 5.0e-29 132.1 108 63.0
CsaV3_6G000280 Cucumis sativus L. HOM05D002092 ORTHO05D007041 5.0e-29 132.1 110 60.9
MD13G1140600 Malus domestica HOM05D002092 ORTHO05D007041 5.0e-29 132.1 110 61.8
Potri.008G205900 Populus trichocarpa HOM05D002092 ORTHO05D007041 5.0e-29 132.1 110 61.8
FvH4_4g21590 Fragaria vesca HOM05D002092 ORTHO05D007041 6.5e-29 131.7 110 60.9
MD16G1135200 Malus domestica HOM05D002092 ORTHO05D007041 6.5e-29 131.7 110 61.8
QL06p014379 Quercus lobata HOM05D002092 ORTHO05D007041 6.5e-29 131.7 110 60.9
Hund22644 Selenicereus undatus HOM05D002092 ORTHO05D007041 6.5e-29 131.7 108 63.9
Ca_21373_v3 Cicer arietinum L. HOM05D002092 ORTHO05D007041 8.5e-29 131.3 108 63.0
CiPaw.02G068900 Carya illinoinensis HOM05D002092 ORTHO05D007041 1.1e-28 131.0 110 60.9
Dinv01476 Davidia involucrata HOM05D002092 ORTHO05D007041 1.1e-28 131.0 110 61.8
FAN07G0083 Fragaria x ananassa HOM05D002092 ORTHO05D007041 1.1e-28 131.0 110 60.0
Prupe.1G104000 Prunus persica HOM05D002092 ORTHO05D007041 1.1e-28 131.0 110 61.8
Cfa015737 Carpinus fangiana HOM05D002092 ORTHO05D007041 1.4e-28 130.6 110 60.9
ClCG06G004150 Citrullus lanatus HOM05D002092 ORTHO05D007041 1.4e-28 130.6 110 60.9
Medtr4g123980 Medicago truncatula HOM05D002092 ORTHO05D007041 1.9e-28 130.2 108 62.0
Psat4g021200 Pisum sativum HOM05D002092 ORTHO05D007041 1.9e-28 130.2 108 62.0
CSS0002469 Camellia sinensis var. sinensis HOM05D002092 ORTHO05D007041 2.5e-28 129.8 110 60.9
Glyma.13G119100 Glycine max HOM05D002092 ORTHO05D007041 2.5e-28 129.8 108 62.0
Glyma.17G041100 Glycine max HOM05D002092 ORTHO05D007041 2.5e-28 129.8 108 62.0
VMungo1215G0636 Vigna mungo HOM05D002092 ORTHO05D007041 2.5e-28 129.8 108 61.1
Eucgr.H04128 Eucalyptus grandis HOM05D002092 ORTHO05D007041 3.2e-28 129.4 108 60.2
Hma1.2p1_1449F.1_g284065 Hydrangea macrophylla HOM05D002092 ORTHO05D007041 3.2e-28 129.4 110 61.8
Hma1.2p1_2234F.1_g317640 Hydrangea macrophylla HOM05D002092 ORTHO05D007041 3.2e-28 129.4 110 61.8
Migut.C00318 Erythranthe guttata HOM05D002092 ORTHO05D007041 4.2e-28 129.0 110 59.1
Lj4g0022953 Lotus japonicus HOM05D002092 ORTHO05D007041 4.2e-28 129.0 108 61.1
Phvul.003G122300 Phaseolus vulgaris HOM05D002092 ORTHO05D007041 4.2e-28 129.0 108 61.1
Nitab4.5_0000978g0080 Nicotiana tabacum HOM05D002092 ORTHO05D007041 5.5e-28 128.6 108 59.3
Nitab4.5_0002466g0050 Nicotiana tabacum HOM05D002092 ORTHO05D007041 5.5e-28 128.6 108 59.3
PSO210G1155 Papaver somniferum HOM05D002092 ORTHO05D007041 5.5e-28 128.6 110 60.0
PGR004G1753 Punica granatum HOM05D002092 ORTHO05D007041 5.5e-28 128.6 110 60.0
Solyc12g098830.2 Solanum lycopersicum HOM05D002092 ORTHO05D007041 5.5e-28 128.6 108 59.3
Sopen12g033570 Solanum pennellii HOM05D002092 ORTHO05D007041 5.5e-28 128.6 108 59.3
vmacro08015 Vaccinium macrocarpon HOM05D002092 ORTHO05D007041 5.5e-28 128.6 108 61.1
SGA_v2.0_scaffold157G37393 Striga asiatica HOM05D002092 ORTHO05D007041 7.2e-28 128.3 108 60.2
TAR633G1005 Trochodendron aralioides HOM05D002092 ORTHO05D007041 7.2e-28 128.3 110 60.9
Migut.G00901 Erythranthe guttata HOM05D002092 ORTHO05D007041 9.4e-28 127.9 110 58.2
TPR.G12594 Trifolium pratense HOM05D002092 ORTHO05D007041 9.4e-28 127.9 108 61.1
Zm00001eb333800 Zea mays HOM05D002092 ORTHO05D007041 9.4e-28 127.9 110 60.0
Lalb_Chr07g0181631 Lupinus albus HOM05D002092 ORTHO05D007041 1.6e-27 127.1 108 61.1
MBI18_g10381_MAGBIO Magnolia biondii HOM05D002092 ORTHO05D007041 1.6e-27 127.1 110 59.1
ATR0796G082 Amborella trichopoda HOM05D002092 ORTHO05D007041 2.1e-27 126.7 110 59.1
PSO761G0176 Papaver somniferum HOM05D002092 ORTHO05D007041 2.1e-27 126.7 110 60.0
CAN.G484.114 Capsicum annuum HOM05D002092 ORTHO05D007041 2.7e-27 126.3 108 58.3
Lalb_Chr12g0200551 Lupinus albus HOM05D002092 ORTHO05D007041 2.7e-27 126.3 108 60.2
Lj6A702T45 Lonicera japonica HOM05D002092 ORTHO05D007041 3.6e-27 125.9 110 59.1
Peaxi162Scf00323g00822 Petunia axillaris HOM05D002092 ORTHO05D007041 3.6e-27 125.9 108 57.4
CDE02G3170 Ceratophyllum demersum HOM05D002092 ORTHO05D007041 4.7e-27 125.6 110 58.2
SalBow8G4005 Salvia bowleyana HOM05D002092 ORTHO05D007041 1.4e-26 124.0 110 57.3
ECA246G4720 Erigeron canadensis HOM05D002092 ORTHO05D007041 1.8e-26 123.6 110 57.3
MSTRG.10185 Avicennia marina HOM05D002092 ORTHO05D007041 2.3e-26 123.2 108 57.4
Cc03_g00070 Coffea canephora HOM05D002092 ORTHO05D007041 2.3e-26 123.2 108 58.3
Oeu002202.1 Olea europaea HOM05D002092 ORTHO05D007041 2.3e-26 123.2 108 58.3
GSVIVG01017695001 Vitis vinifera HOM05D002092 ORTHO05D007041 2.3e-26 123.2 110 57.3
Aqoxy2G02499 Aquilegia oxysepala HOM05D002092 ORTHO05D007041 3.0e-26 122.9 110 58.2
HanXRQChr05g0148981 Helianthus annuus HOM05D002092 ORTHO05D007041 3.0e-26 122.9 110 56.4
DCAR_023413 Daucus carota HOM05D002092 ORTHO05D007041 3.9e-26 122.5 110 56.4
Dinv29498 Davidia involucrata HOM05D002092 ORTHO05D007041 3.9e-26 122.5 109 58.7
Sc13g0008030 Simmondsia chinensis HOM05D002092 ORTHO05D007041 6.7e-26 121.7 110 58.2
Glyma.15G187000 Glycine max HOM05D002092 ORTHO05D007041 2.8e-24 116.3 107 56.1
SEGI_14302 Sequoiadendron giganteum HOM05D002092 ORTHO05D007041 4.8e-24 115.5 110 54.5
Phvul.009G220400 Phaseolus vulgaris HOM05D002092 ORTHO05D007041 2.4e-23 113.2 108 54.6
COL.COLO4_34508 Corchorus olitorius HOM05D002092 ORTHO05D007041 5.3e-23 112.1 66 80.3
FAN12G0996 Fragaria x ananassa HOM05D002092 ORTHO05D007041 5.3e-23 112.1 74 71.6
TAR636G2233 Trochodendron aralioides HOM05D001914 ORTHO05D007041 9.1e-23 111.3 109 53.2
MELO3C021226.2 Cucumis melo HOM05D002092 ORTHO05D007041 1.2e-22 110.9 69 78.3
AagrBONN_evm.TU.Sc2ySwM_117.1377 Anthoceros agrestis HOM05D002092 ORTHO05D007041 5.9e-22 108.6 110 49.1
Pp3c3_29260 Physcomitrium patens HOM05D002092 ORTHO05D007041 1.3e-21 107.5 104 50.0
SMO118G0340 Selaginella moellendorffii HOM05D002092 ORTHO05D007041 1.3e-21 107.5 108 50.0
Pp3c8_7530 Physcomitrium patens HOM05D002092 ORTHO05D007041 2.2e-21 106.7 106 49.1
Mapoly0044s0089 Marchantia polymorpha HOM05D002092 ORTHO05D007041 1.9e-20 103.6 108 50.0
Haze_00759 Corylus avellana HOM05D002092 ORTHO05D007041 2.7e-19 99.8 140 45.7
CBR_g36890 Chara braunii HOM05D002092 ORTHO05D007041 2.0e-17 93.6 106 47.2
Cre13.g573150 Chlamydomonas reinhardtii HOM05D002092 ORTHO05D007041 1.8e-15 87.0 107 44.9
Prupe.1G104500 Prunus persica HOM05D002092 ORTHO05D007041 1.0e-13 81.3 110 47.3
Sabra08G0149600 Salix brachista HOM05D002092 ORTHO05D007041 1.7e-13 80.5 110 46.4
Os01g0250900 Oryza sativa ssp. japonica HOM05D002092 ORTHO05D007041 8.8e-10 68.2 44 79.5
arahy.Tifrunner.gnm1.ann1.06DG1T Arachis hypogaea HOM05D002092 ORTHO05D007041 2.0e-09 67.0 44 75.0
AUR62023651 Chenopodium quinoa HOM05D002092 ORTHO05D007041 2.0e-09 67.0 45 73.3
arahy.Tifrunner.gnm1.ann1.GJZ8MD Arachis hypogaea HOM05D002092 ORTHO05D007041 4.4e-09 65.9 78 50.0
BcaC01g03587 Brassica carinata HOM05D000278 ORTHO05D005056 8.3e-08 61.6 42 73.8
A03p41540 Brassica napus HOM05D000278 ORTHO05D005056 8.3e-08 61.6 42 73.8
C03p50870 Brassica napus HOM05D000278 ORTHO05D005056 8.3e-08 61.6 42 73.8
BolC3t17371H Brassica oleracea HOM05D000278 ORTHO05D005056 8.3e-08 61.6 42 73.8
BraA03t13309Z Brassica rapa HOM05D000278 ORTHO05D005056 8.3e-08 61.6 42 73.8
AT3G20050 Arabidopsis thaliana HOM05D000278 ORTHO05D005056 1.4e-07 60.8 42 71.4
Thhalv10020463m.g Eutrema salsugineum HOM05D000278 ORTHO05D005056 1.4e-07 60.8 42 71.4
BcaB04g20669 Brassica carinata HOM05D000278 ORTHO05D005056 1.8e-07 60.5 42 71.4
BcaC09g48960 Brassica carinata HOM05D000278 ORTHO05D005056 1.8e-07 60.5 42 71.4
A01p34600 Brassica napus HOM05D000278 ORTHO05D005056 1.8e-07 60.5 42 71.4
C01p44050 Brassica napus HOM05D000278 ORTHO05D005056 1.8e-07 60.5 42 71.4
BolC1t04366H Brassica oleracea HOM05D000278 ORTHO05D005056 1.8e-07 60.5 42 71.4
BraA01t03554Z Brassica rapa HOM05D000278 ORTHO05D005056 1.8e-07 60.5 42 71.4
Sp3g18080 Schrenkiella parvula HOM05D000278 ORTHO05D005056 1.8e-07 60.5 42 71.4
Aa31LG8G6840 Aethionema arabicum HOM05D000278 ORTHO05D005056 2.4e-07 60.1 33 87.9
BcaB04g19077 Brassica carinata HOM05D000278 ORTHO05D005056 2.4e-07 60.1 42 69.0
CARHR095580 Cardamine hirsuta HOM05D000278 ORTHO05D005056 2.4e-07 60.1 42 71.4
Lalb_Chr13g0295521 Lupinus albus HOM05D000278 ORTHO05D005056 3.1e-07 59.7 43 69.8
Carub.0003s1997 Capsella rubella HOM05D000278 ORTHO05D005056 4.1e-07 59.3 42 69.0
Lalb_Chr12g0204691 Lupinus albus HOM05D000278 ORTHO05D005056 4.1e-07 59.3 34 85.3
arahy.Tifrunner.gnm1.ann1.6YLD65 Arachis hypogaea HOM05D002092 ORTHO05D084942 5.4e-07 58.9 64 48.4
BcaB06g26075 Brassica carinata HOM05D000278 ORTHO05D005056 5.4e-07 58.9 42 69.0
BcaC05g28366 Brassica carinata HOM05D000278 ORTHO05D005056 5.4e-07 58.9 42 69.0
A05p29050 Brassica napus HOM05D000278 ORTHO05D005056 5.4e-07 58.9 42 69.0
BolC5t33171H Brassica oleracea HOM05D000278 ORTHO05D005056 5.4e-07 58.9 42 69.0
BraA05t21789Z Brassica rapa HOM05D000278 ORTHO05D005056 5.4e-07 58.9 42 69.0
Lalb_Chr07g0185981 Lupinus albus HOM05D000278 ORTHO05D048312 5.4e-07 58.9 38 73.7
BcaC05g28368 Brassica carinata HOM05D000278 ORTHO05D005056 7.0e-07 58.5 33 84.8
C05p44480 Brassica napus HOM05D000278 ORTHO05D005056 7.0e-07 58.5 33 84.8
AL3G33730 Arabidopsis lyrata HOM05D000278 ORTHO05D005056 9.1e-07 58.2 42 69.0
VMungo1309G2400 Vigna mungo HOM05D002092 ORTHO05D007041 5.9e-06 55.5 44 59.1
arahy.Tifrunner.gnm1.ann1.0EJ6SU Arachis hypogaea HOM05D000278 ORTHO05D005056 7.7e-06 55.1 52 59.6
arahy.Tifrunner.gnm1.ann1.W5WKZB Arachis hypogaea HOM05D000278 ORTHO05D005056 7.7e-06 55.1 52 59.6


User provided reference genes

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