Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02012 Brassica carinata HOM05D007994 ORTHO05D010092 6.3e-94 347.4 176 100.0
C03p69540 Brassica napus HOM05D007994 ORTHO05D010092 6.3e-94 347.4 176 100.0
BolC3t19209H Brassica oleracea HOM05D007994 ORTHO05D010092 6.3e-94 347.4 176 100.0
A06p21760 Brassica napus HOM05D007994 ORTHO05D010092 3.4e-92 341.7 176 98.3
BraA06t25263Z Brassica rapa HOM05D007994 ORTHO05D010092 3.4e-92 341.7 176 98.3
Sp5g16480 Schrenkiella parvula HOM05D007994 ORTHO05D010092 5.0e-59 231.5 174 73.0
AL5G22890 Arabidopsis lyrata HOM05D007994 ORTHO05D010092 3.1e-40 169.1 176 58.5
Carub.0015s0006 Capsella rubella HOM05D007994 ORTHO05D010092 8.9e-40 167.5 176 58.5
Carub.0005s1038 Capsella rubella HOM05D007994 ORTHO05D010092 2.6e-39 166.0 176 58.0
CARHR151480 Cardamine hirsuta HOM05D007994 ORTHO05D010092 2.1e-36 156.4 172 54.1
AT3G44716 Arabidopsis thaliana HOM05D007994 ORTHO05D010092 1.0e-35 154.1 177 53.1
BcaB01g01144 Brassica carinata HOM05D007994 ORTHO05D010092 3.3e-34 149.1 77 93.5
THA.LOC104814803 Tarenaya hassleriana HOM05D007994 ORTHO05D010092 1.3e-30 137.1 252 36.9
Peaxi162Scf00002g05422 Petunia axillaris HOM05D007994 ORTHO05D010092 6.4e-22 108.2 144 41.7
Thecc.09G290600 Theobroma cacao HOM05D007994 ORTHO05D010092 1.1e-21 107.5 272 29.4
SalBow3G1236 Salvia bowleyana HOM05D007994 ORTHO05D010092 1.4e-21 107.1 144 41.0
Migut.N02511 Erythranthe guttata HOM05D007994 ORTHO05D010092 4.2e-21 105.5 163 36.2
PGSC0003DMG400026538 Solanum tuberosum HOM05D007994 ORTHO05D010092 2.1e-20 103.2 206 37.4
Duzib170G0069 Durio zibethinus HOM05D007994 ORTHO05D010092 6.0e-20 101.7 273 29.3
Solyc11g066940.2 Solanum lycopersicum HOM05D007994 ORTHO05D010092 1.0e-19 100.9 178 38.2
Duzib168G2077 Durio zibethinus HOM05D007994 ORTHO05D010092 2.5e-18 96.3 272 27.9
TAR623G0693 Trochodendron aralioides HOM05D007994 ORTHO05D010092 3.3e-18 95.9 262 29.0
Dinv12515 Davidia involucrata HOM05D007994 ORTHO05D010092 4.3e-18 95.5 271 29.2
Sabra09G0116600 Salix brachista HOM05D007994 ORTHO05D010092 5.6e-18 95.1 262 27.1
Manes.11G158100 Manihot esculenta HOM05D007994 ORTHO05D010092 2.8e-17 92.8 261 26.4
Gohir.A09G093700 Gossypium hirsutum HOM05D007994 ORTHO05D010092 6.2e-17 91.7 243 28.0
Gohir.D09G093400 Gossypium hirsutum HOM05D007994 ORTHO05D010092 3.1e-16 89.4 260 27.7
Gorai.006G110000 Gossypium raimondii HOM05D007994 ORTHO05D010092 4.0e-16 89.0 243 27.6
CiPaw.13G140400 Carya illinoinensis HOM05D007994 ORTHO05D010092 6.9e-16 88.2 246 28.5
ClCG01G012620 Citrullus lanatus HOM05D007994 ORTHO05D010092 1.2e-15 87.4 240 30.4
Atru.chr3.3364 Acer truncatum HOM05D007994 ORTHO05D010092 1.5e-15 87.0 237 28.7
Cfa010076 Carpinus fangiana HOM05D007994 ORTHO05D010092 2.0e-15 86.7 245 28.6
MSTRG.12356 Avicennia marina HOM05D007994 ORTHO05D010092 3.4e-15 85.9 246 27.6
Sed0020093 Sechium edule HOM05D007994 ORTHO05D010092 7.6e-15 84.7 234 27.8
VMungo1080G0008 Vigna mungo HOM05D007994 ORTHO05D010092 2.2e-14 83.2 234 25.6
Glyma.11G188500 Glycine max HOM05D007994 ORTHO05D010092 3.8e-14 82.4 270 26.3
CsaV3_1G014550 Cucumis sativus L. HOM05D007994 ORTHO05D010092 4.9e-14 82.0 239 28.5
COL.COLO4_19306 Corchorus olitorius HOM05D007994 ORTHO05D010092 8.4e-14 81.3 270 26.3
Prupe.6G120200 Prunus persica HOM05D007994 ORTHO05D010092 8.4e-14 81.3 169 30.8
Ciclev10029500m.g Citrus clementina HOM05D007994 ORTHO05D010092 1.1e-13 80.9 152 35.5
MELO3C004786.2 Cucumis melo HOM05D007994 ORTHO05D010092 1.1e-13 80.9 261 26.8
Phvul.011G091200 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 1.1e-13 80.9 244 25.4
QL01p013577 Quercus lobata HOM05D007994 ORTHO05D010092 1.1e-13 80.9 47 63.8
GSVIVG01031390001 Vitis vinifera HOM05D007994 ORTHO05D010092 1.4e-13 80.5 75 48.0
Aqoxy4G02880 Aquilegia oxysepala HOM05D007994 ORTHO05D010092 1.9e-13 80.1 261 24.5
Lalb_Chr19g0136731 Lupinus albus HOM05D007994 ORTHO05D010092 3.2e-13 79.3 275 26.2
Cc01_g09740 Coffea canephora HOM05D007994 ORTHO05D010092 4.2e-13 79.0 244 25.8
CANSAT54G1189 Cannabis sativa HOM05D007994 ORTHO05D010092 5.4e-13 78.6 73 49.3
Eucgr.J00433 Eucalyptus grandis HOM05D007994 ORTHO05D010092 2.7e-12 76.3 47 55.3
RcHm_v2.0_Chr5g0054991 Rosa chinensis HOM05D007994 ORTHO05D010092 2.7e-12 76.3 73 42.5
PSO384G4503 Papaver somniferum HOM05D007994 ORTHO05D010092 3.5e-12 75.9 229 26.6
Haze_23442 Corylus avellana HOM05D007994 ORTHO05D010092 4.6e-12 75.5 237 27.0
Nn2g14036 Nelumbo nucifera HOM05D007994 ORTHO05D010092 6.0e-12 75.1 72 44.4
Actinidia35451 Actinidia chinensis HOM05D000078 ORTHO05D010092 7.9e-12 74.7 71 45.1
MD03G1135900 Malus domestica HOM05D007994 ORTHO05D010092 7.9e-12 74.7 94 36.2
TWI75G1300 Tripterygium wilfordii HOM05D007994 ORTHO05D010092 7.9e-12 74.7 237 24.1
vmacro14359 Vaccinium macrocarpon HOM05D007994 ORTHO05D010092 1.0e-11 74.3 47 57.4
FAN16G1405 Fragaria x ananassa HOM05D007994 ORTHO05D010092 1.3e-11 73.9 76 44.7
Lj3g0008283 Lotus japonicus HOM05D007994 ORTHO05D010092 1.3e-11 73.9 273 24.9
Potri.009G148200 Populus trichocarpa HOM05D007994 ORTHO05D010092 2.3e-11 73.2 179 30.7
Rhsim01G0207500 Rhododendron simsii HOM05D007994 ORTHO05D010092 5.1e-11 72.0 48 54.2
PGR119G1356 Punica granatum HOM05D007994 ORTHO05D010092 5.6e-10 68.6 47 51.1
TPR.G15591 Trifolium pratense HOM05D007994 ORTHO05D010092 5.6e-10 68.6 71 42.3
VMungo1127G0625 Vigna mungo HOM05D007994 ORTHO05D010092 5.6e-10 68.6 58 46.6
CSS0019289 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-09 67.4 90 41.1
PSO339G3278 Papaver somniferum HOM05D007994 ORTHO05D010092 2.1e-09 66.6 55 45.5
Phvul.005G126500 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 2.1e-09 66.6 98 35.7
Medtr4g055130 Medicago truncatula HOM05D007994 ORTHO05D010092 1.1e-08 64.3 68 44.1
Oeu058281.1 Olea europaea HOM05D007994 ORTHO05D010092 2.4e-08 63.2 61 45.9
Sopen11g026660 Solanum pennellii HOM05D007994 ORTHO05D010092 9.0e-08 61.2 82 45.1
SEGI_15329 Sequoiadendron giganteum HOM05D007994 ORTHO05D010092 5.8e-07 58.5 50 46.0
Psat7g190280 Pisum sativum HOM05D007994 ORTHO05D010092 2.9e-06 56.2 51 43.1
ATR0820G083 Amborella trichopoda HOM05D007994 ORTHO05D010092 3.8e-06 55.8 117 28.2
Medtr4g053310 Medicago truncatula HOM05D007994 ORTHO05D010092 3.8e-06 55.8 47 42.6


User provided reference genes

Program Settings