Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 2.4e-69 265.4 136 100.0
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 2.4e-69 265.4 136 100.0
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 2.4e-69 265.4 136 100.0
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 2.7e-68 261.9 136 98.5
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 2.7e-68 261.9 136 98.5
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 6.0e-68 260.8 136 97.8
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.3e-67 259.6 136 97.8
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.1e-66 256.5 136 96.3
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.3e-62 243.0 136 92.6
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 6.0e-60 234.2 136 88.2
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 6.0e-60 234.2 136 88.2
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 1.7e-59 232.6 136 89.7
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 3.9e-59 231.5 136 89.7
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 5.1e-59 231.1 136 90.4
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.1e-58 229.9 136 86.8
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 1.8e-56 222.6 136 86.8
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 2.9e-54 215.3 136 82.4
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 2.3e-51 205.7 119 84.0
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 3.9e-51 204.9 119 84.9
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 6.6e-51 204.1 123 82.9
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 8.7e-51 203.8 123 82.9
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.1e-50 203.4 119 84.0
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.5e-50 203.0 117 83.8
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.5e-50 203.0 126 79.4
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.5e-50 203.0 119 82.4
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 1.9e-50 202.6 130 80.0
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 2.5e-50 202.2 119 82.4
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 2.5e-50 202.2 123 82.1
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 3.3e-50 201.8 117 84.6
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.3e-50 201.8 119 81.5
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 3.3e-50 201.8 117 83.8
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.3e-50 201.4 122 79.5
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 5.6e-50 201.1 117 82.1
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 5.6e-50 201.1 126 77.8
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 9.6e-50 200.3 126 77.8
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 9.6e-50 200.3 122 80.3
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.3e-49 199.9 119 80.7
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.6e-49 199.5 117 83.8
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.6e-49 199.5 119 80.7
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 1.6e-49 199.5 119 80.7
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.1e-49 199.1 117 81.2
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.8e-49 198.7 117 83.8
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 2.8e-49 198.7 117 82.1
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 4.8e-49 198.0 134 80.6
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 4.8e-49 198.0 119 81.5
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 6.2e-49 197.6 124 77.4
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 8.1e-49 197.2 119 78.2
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.1e-48 196.8 126 78.6
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.1e-48 196.8 117 82.1
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.1e-48 196.8 119 78.2
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.1e-48 196.8 121 79.3
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.4e-48 196.4 133 73.7
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 2.4e-48 195.7 119 79.0
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 2.4e-48 195.7 117 81.2
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 4.0e-48 194.9 121 76.9
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 4.0e-48 194.9 119 78.2
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.9e-48 194.1 119 77.3
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 9.0e-48 193.7 134 73.1
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 9.0e-48 193.7 121 76.9
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.2e-47 193.4 119 77.3
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.2e-47 193.4 117 79.5
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.2e-47 193.4 124 76.6
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.5e-47 193.0 124 74.2
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.0e-47 192.6 117 77.8
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 2.0e-47 192.6 122 79.5
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.0e-47 192.6 124 75.8
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 2.6e-47 192.2 117 76.9
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.5e-47 191.4 123 74.8
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.8e-47 191.0 121 77.7
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 9.9e-47 190.3 119 78.2
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.3e-46 189.9 130 73.1
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.3e-46 189.9 119 77.3
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-46 189.5 127 74.8
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 2.2e-46 189.1 127 74.0
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.2e-46 189.1 124 71.8
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 2.2e-46 189.1 125 75.2
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.2e-46 189.1 119 77.3
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 4.9e-46 188.0 127 74.0
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 8.4e-46 187.2 119 74.8
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 8.4e-46 187.2 117 79.5
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.4e-45 186.4 119 75.6
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.9e-45 186.0 117 75.2
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.9e-45 186.0 130 71.5
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.9e-45 186.0 121 75.2
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 5.4e-45 184.5 131 67.2
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 5.4e-45 184.5 136 69.1
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 5.4e-45 184.5 117 74.4
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 5.4e-45 184.5 125 73.6
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 9.3e-45 183.7 120 75.0
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 9.3e-45 183.7 119 74.8
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 2.7e-44 182.2 121 72.7
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 3.5e-44 181.8 121 71.1
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.5e-44 181.8 127 72.4
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 4.6e-44 181.4 124 75.0
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 6.0e-44 181.0 126 69.0
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 7.9e-44 180.6 105 84.8
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.9e-44 180.6 124 72.6
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.0e-43 180.3 105 81.0
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.0e-43 180.3 119 75.6
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 5.6e-42 174.5 108 77.8
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.4e-42 174.1 126 68.3
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.3e-41 173.3 98 91.8
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.3e-41 173.3 98 91.8
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 2.1e-41 172.6 122 71.3
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 6.2e-41 171.0 119 67.2
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 3.1e-40 168.7 98 86.7
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.0e-40 168.3 99 84.8
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.2e-39 166.8 120 70.0
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.2e-39 166.8 122 68.0
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.5e-39 166.4 117 68.4
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 3.4e-39 165.2 103 74.8
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.4e-39 165.2 110 74.5
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 7.6e-39 164.1 120 69.2
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.3e-38 163.3 127 67.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 8.4e-38 160.6 98 78.6
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.9e-37 159.5 96 81.2
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 3.2e-37 158.7 98 77.6
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 5.5e-37 157.9 117 68.4
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.5e-36 155.2 90 78.9
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.9e-35 151.8 107 69.2
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 3.9e-35 151.8 95 78.9
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 8.7e-35 150.6 117 64.1
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 2.1e-33 146.0 119 65.5
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.4e-32 143.3 126 60.3
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 6.9e-32 141.0 125 59.2
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.2e-31 140.2 96 70.8
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.5e-31 139.8 86 76.7
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 2.6e-31 139.0 110 62.7
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 5.8e-31 137.9 84 77.4
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 2.5e-29 132.5 119 56.3
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 2.5e-29 132.5 88 72.7
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 4.2e-29 131.7 107 60.7
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 9.3e-29 130.6 102 65.7
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 9.3e-29 130.6 117 59.8
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.0e-27 127.1 117 53.0
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.0e-27 127.1 79 72.2
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.9e-27 125.2 84 73.8
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.5e-26 123.2 116 57.8
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 3.3e-26 122.1 112 53.6
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 5.7e-26 121.3 125 56.0
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 9.7e-26 120.6 114 57.9
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 9.7e-26 120.6 111 54.1
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 2.8e-25 119.0 88 60.2
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.8e-25 118.2 118 53.4
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 6.3e-25 117.9 113 51.3
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 8.2e-25 117.5 117 50.4
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 3.1e-24 115.5 115 53.0
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 5.3e-24 114.8 113 50.4
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 2.6e-23 112.5 129 48.8
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.9e-23 111.3 103 55.3
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 1.9e-21 106.3 131 45.0
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 5.5e-21 104.8 76 73.7
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 7.2e-21 104.4 61 83.6
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 3.1e-16 89.0 53 75.5
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 5.7e-10 68.2 77 48.1
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 8.2e-09 64.3 35 88.6
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 2.6e-07 59.3 66 43.9
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 7.7e-07 57.8 111 37.8
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 1.7e-06 56.6 111 34.2
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 2.2e-06 56.2 111 35.1
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 5.0e-06 55.1 111 36.0
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 6.5e-06 54.7 111 36.0
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 6.5e-06 54.7 111 32.4
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 8.5e-06 54.3 111 36.0
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 8.5e-06 54.3 111 36.0
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 8.5e-06 54.3 111 35.1
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 8.5e-06 54.3 111 38.7


User provided reference genes

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