Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.9e-220 768.8 375 100.0
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.9e-220 768.8 375 100.0
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 1.6e-219 765.8 375 99.5
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 5.8e-214 747.3 375 96.8
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 1.3e-213 746.1 375 96.5
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.2e-198 696.4 378 90.5
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 5.6e-193 677.6 378 88.6
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 2.4e-191 672.2 374 88.5
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.3e-186 656.4 377 86.5
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 1.3e-186 656.4 378 86.0
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 5.0e-181 637.9 373 85.0
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 1.1e-172 610.1 387 77.0
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 1.8e-167 592.8 308 93.2
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.7e-152 543.1 383 69.5
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 6.8e-146 521.2 366 68.6
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 3.4e-145 518.8 347 72.0
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 3.4e-145 518.8 371 69.3
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 7.5e-145 517.7 340 72.1
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 9.8e-145 517.3 377 66.8
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 2.4e-143 512.7 350 70.3
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 3.1e-143 512.3 382 66.5
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 2.7e-142 509.2 360 67.8
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.7e-142 509.2 359 68.2
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 4.5e-142 508.4 382 67.3
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 4.5e-142 508.4 385 64.7
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 4.5e-142 508.4 359 68.8
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 1.0e-141 507.3 353 68.8
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.3e-141 506.9 384 65.6
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 1.7e-141 506.5 357 67.2
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 1.7e-141 506.5 379 65.7
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.7e-141 506.5 377 65.8
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.5e-140 502.7 370 64.9
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 5.5e-140 501.5 377 66.0
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 7.2e-140 501.1 350 69.7
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 7.2e-140 501.1 355 68.2
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 9.5e-140 500.7 355 67.6
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.8e-139 499.2 352 65.6
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 2.8e-139 499.2 380 65.5
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 3.6e-139 498.8 380 63.7
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 4.7e-139 498.4 353 67.1
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.0e-139 497.7 355 67.3
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 1.0e-138 497.3 355 67.6
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 1.4e-138 496.9 359 68.8
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 3.0e-138 495.7 352 67.9
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 4.0e-138 495.4 378 63.2
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 6.8e-138 494.6 374 62.6
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.2e-137 493.8 357 66.9
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.0e-137 493.0 356 67.4
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 9.8e-137 490.7 340 68.5
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 9.8e-137 490.7 339 68.7
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 1.7e-136 490.0 374 65.5
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 4.9e-136 488.4 360 64.4
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.1e-135 487.3 351 66.7
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.1e-135 487.3 349 67.9
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 1.1e-135 487.3 339 68.4
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.4e-135 486.9 370 63.8
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.8e-135 486.5 379 64.1
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 4.1e-135 485.3 345 68.1
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 5.4e-135 485.0 375 65.3
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 5.4e-135 485.0 370 65.1
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 7.0e-135 484.6 360 65.6
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.6e-134 483.4 354 66.1
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.0e-134 483.0 365 64.7
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 3.5e-134 482.3 353 66.9
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 3.5e-134 482.3 365 63.8
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 5.9e-134 481.5 366 65.0
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.0e-133 480.7 343 66.8
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 1.3e-133 480.3 351 65.0
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 6.6e-133 478.0 356 66.9
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 8.6e-133 477.6 362 64.4
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 1.1e-132 477.2 375 63.2
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 1.1e-132 477.2 357 66.1
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 1.9e-132 476.5 375 62.9
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 3.3e-132 475.7 372 62.9
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 4.3e-132 475.3 354 63.0
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 7.3e-132 474.6 373 62.5
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.6e-131 473.4 346 65.3
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 3.6e-131 472.2 360 65.0
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 3.6e-131 472.2 438 56.4
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 4.7e-131 471.9 377 63.1
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 8.0e-131 471.1 373 63.0
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 1.0e-130 470.7 346 65.6
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.0e-130 470.7 366 63.7
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.4e-130 470.3 390 61.0
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.8e-130 469.9 346 64.5
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.3e-130 469.5 381 61.4
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 2.3e-130 469.5 350 64.9
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.5e-129 466.8 346 64.2
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 1.1e-127 460.7 338 65.1
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.4e-127 460.3 343 65.0
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 1.4e-127 460.3 366 60.1
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 2.4e-127 459.5 356 61.0
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 6.0e-126 454.9 330 66.7
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.7e-125 453.4 342 64.0
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 2.3e-125 453.0 391 59.6
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.1e-123 446.4 370 61.1
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.1e-122 444.1 373 60.3
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.8e-121 437.6 382 58.6
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 7.1e-119 431.4 359 57.9
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 2.1e-118 429.9 360 58.6
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.7e-117 426.8 390 57.2
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 3.0e-117 426.0 355 59.4
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 3.9e-117 425.6 406 53.9
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.5e-116 423.7 349 62.2
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.2e-115 420.6 337 60.8
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.2e-115 420.6 303 67.0
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.1e-114 417.5 358 59.8
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.2e-114 415.2 389 56.0
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 3.4e-113 412.5 378 55.8
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 5.8e-113 411.8 230 87.0
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 5.8e-113 411.8 361 58.2
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.3e-112 410.6 376 57.7
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 3.2e-111 406.0 301 64.5
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 7.1e-111 404.8 363 56.2
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 7.1e-111 404.8 351 58.4
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 7.1e-111 404.8 549 42.4
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 2.7e-110 402.9 322 59.9
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 3.9e-109 399.1 370 55.4
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.1e-109 398.7 506 46.0
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 1.1e-108 397.5 361 59.0
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.1e-107 393.3 381 55.6
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 4.7e-107 392.1 374 53.7
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 1.3e-104 384.0 405 52.6
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.1e-101 372.1 347 56.5
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.9e-100 370.2 269 64.7
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 2.9e-96 356.3 248 69.8
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 2.4e-95 353.2 240 71.2
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 3.5e-94 349.4 385 48.6
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 6.6e-93 345.1 388 46.1
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 9.6e-92 341.3 294 58.8
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 8.1e-91 338.2 376 48.7
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.1e-90 336.3 275 60.4
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 9.0e-90 334.7 340 52.9
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 1.7e-88 330.5 238 66.0
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 2.4e-87 326.6 249 64.7
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 4.5e-81 305.8 343 48.1
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.1e-75 287.0 278 54.7
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 9.0e-74 281.6 185 73.0
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 4.6e-70 269.2 199 66.3
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 3.9e-69 266.2 517 34.0
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.1e-68 264.6 362 43.1
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.5e-65 254.2 344 44.2
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 4.2e-55 219.5 191 51.8
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 6.7e-53 212.2 297 40.4
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.5e-52 211.1 256 46.1
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.3e-40 171.4 397 33.2
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.2e-39 166.8 172 51.2
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 1.4e-37 161.4 300 33.3
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 1.2e-36 158.3 327 30.0
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 2.6e-36 157.1 135 62.2
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.4e-28 130.2 114 53.5
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.4e-26 124.8 93 65.6
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 1.5e-20 104.8 81 64.2
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 8.6e-16 89.0 56 69.6
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 2.1e-14 84.3 44 84.1
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.0e-13 82.0 63 57.1
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.4e-12 76.6 43 81.4
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 3.5e-09 67.0 131 37.4
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 3.0e-08 63.9 51 52.9


User provided reference genes

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