Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01916 Brassica carinata HOM05D000041 ORTHO05D094142 9.5e-68 260.0 127 100.0
AL5G25190 Arabidopsis lyrata HOM05D000041 ORTHO05D000061 1.3e-21 106.7 102 59.8
AT3G46290 Arabidopsis thaliana HOM05D000041 ORTHO05D000061 1.8e-21 106.3 102 60.8
BcaB01g01016 Brassica carinata HOM05D000041 ORTHO05D000061 1.8e-21 106.3 102 60.8
BcaC01g01917 Brassica carinata HOM05D000041 ORTHO05D000061 1.8e-21 106.3 102 60.8
A06p20940 Brassica napus HOM05D000041 ORTHO05D000061 1.8e-21 106.3 102 60.8
C03p70640 Brassica napus HOM05D000041 ORTHO05D000061 1.8e-21 106.3 102 60.8
BolC3t19319H Brassica oleracea HOM05D000041 ORTHO05D000061 1.8e-21 106.3 102 60.8
BraA06t25177Z Brassica rapa HOM05D000041 ORTHO05D000061 1.8e-21 106.3 102 60.8
Carub.0005s1214 Capsella rubella HOM05D000041 ORTHO05D000061 1.8e-21 106.3 102 60.8
Thhalv10002401m.g Eutrema salsugineum HOM05D000041 ORTHO05D000061 1.8e-21 106.3 102 60.8
A01p26370 Brassica napus HOM05D000041 ORTHO05D000061 5.1e-21 104.8 102 58.8
BolC1t03284H Brassica oleracea HOM05D000041 ORTHO05D000061 5.1e-21 104.8 102 58.8
BraA01t02563Z Brassica rapa HOM05D000041 ORTHO05D000061 5.1e-21 104.8 102 58.8
Sp5g15370 Schrenkiella parvula HOM05D000041 ORTHO05D000061 6.7e-21 104.4 102 59.8
BcaB05g23485 Brassica carinata HOM05D000041 ORTHO05D000061 1.1e-20 103.6 102 58.8
BcaC09g49736 Brassica carinata HOM05D000041 ORTHO05D000061 2.5e-20 102.4 51 94.1
C01p33460 Brassica napus HOM05D000041 ORTHO05D000061 2.5e-20 102.4 51 94.1
CARHR154760 Cardamine hirsuta HOM05D000041 ORTHO05D000061 3.3e-20 102.1 102 58.8
THA.LOC104810793 Tarenaya hassleriana HOM05D000041 ORTHO05D000061 4.5e-17 91.7 52 84.6
THA.LOC104799453 Tarenaya hassleriana HOM05D000041 ORTHO05D000061 1.3e-16 90.1 53 83.0
Duzib168G2321 Durio zibethinus HOM05D000041 ORTHO05D000061 1.7e-16 89.7 101 51.5
Ciclev10027823m.g Citrus clementina HOM05D000041 ORTHO05D000061 2.2e-16 89.4 56 75.0
Carub.0008s2034 Capsella rubella HOM05D000041 ORTHO05D000061 8.5e-16 87.4 84 60.7
Potri.001G234200 Populus trichocarpa HOM05D000041 ORTHO05D000061 8.5e-16 87.4 53 75.5
QL01p034481 Quercus lobata HOM05D000041 ORTHO05D000061 8.5e-16 87.4 104 47.1
Aa31LG4G15380 Aethionema arabicum HOM05D000041 ORTHO05D000061 1.9e-15 86.3 73 64.4
PGR119G2112 Punica granatum HOM05D000041 ORTHO05D000061 1.9e-15 86.3 50 80.0
TWI79G1654 Tripterygium wilfordii HOM05D000041 ORTHO05D000061 1.9e-15 86.3 53 79.2
COL.COLO4_18421 Corchorus olitorius HOM05D000041 ORTHO05D000061 2.5e-15 85.9 50 80.0
Phvul.L003081 Phaseolus vulgaris HOM05D000041 ORTHO05D000061 2.5e-15 85.9 52 76.9
Potri.009G026600 Populus trichocarpa HOM05D000041 ORTHO05D000061 2.5e-15 85.9 50 82.0
Thecc.09G330800 Theobroma cacao HOM05D000041 ORTHO05D000061 2.5e-15 85.9 50 80.0
FvH4_3g34580 Fragaria vesca HOM05D000041 ORTHO05D000061 3.2e-15 85.5 50 78.0
FAN11G0255 Fragaria x ananassa HOM05D000041 ORTHO05D000061 3.2e-15 85.5 50 78.0
FAN16G3011 Fragaria x ananassa HOM05D000041 ORTHO05D000061 3.2e-15 85.5 50 78.0
FAN21G2357 Fragaria x ananassa HOM05D000041 ORTHO05D000061 3.2e-15 85.5 50 78.0
TWI31G0026 Tripterygium wilfordii HOM05D000041 ORTHO05D000061 4.2e-15 85.1 53 75.5
CANSAT54G1592 Cannabis sativa HOM05D000041 ORTHO05D000061 5.5e-15 84.7 101 48.5
Glyma.15G042900 Glycine max HOM05D000041 ORTHO05D000061 5.5e-15 84.7 54 74.1
Gohir.D03G130900 Gossypium hirsutum HOM05D000041 ORTHO05D000061 5.5e-15 84.7 46 87.0
Lalb_Chr14g0374931 Lupinus albus HOM05D000041 ORTHO05D000061 5.5e-15 84.7 77 58.4
Atru.chr3.3787 Acer truncatum HOM05D000041 ORTHO05D000061 9.4e-15 84.0 53 71.7
AL8G36220 Arabidopsis lyrata HOM05D000041 ORTHO05D000061 9.4e-15 84.0 78 61.5
Manes.11G136800 Manihot esculenta HOM05D000041 ORTHO05D000061 1.2e-14 83.6 53 73.6
Medtr4g061833 Medicago truncatula HOM05D000041 ORTHO05D000061 1.2e-14 83.6 53 77.4
Medtr4g061930 Medicago truncatula HOM05D000041 ORTHO05D000061 1.2e-14 83.6 53 77.4
FAN25G0257 Fragaria x ananassa HOM05D000041 ORTHO05D000061 1.6e-14 83.2 50 76.0
Ca_01359_v3 Cicer arietinum L. HOM05D000041 ORTHO05D000061 2.7e-14 82.4 50 78.0
Manes.04G029000 Manihot esculenta HOM05D000041 ORTHO05D000061 2.7e-14 82.4 48 81.2
Medtr2g096160 Medicago truncatula HOM05D000041 ORTHO05D000061 2.7e-14 82.4 44 84.1
TPR.G11618 Trifolium pratense HOM05D000041 ORTHO05D000061 2.7e-14 82.4 44 84.1
AT5G59700 Arabidopsis thaliana HOM05D000041 ORTHO05D000061 3.6e-14 82.0 77 59.7
CiPaw.13G102000 Carya illinoinensis HOM05D000041 ORTHO05D000061 3.6e-14 82.0 105 47.6
Eucgr.L00361 Eucalyptus grandis HOM05D000041 ORTHO05D000061 3.6e-14 82.0 104 44.2
Lj3g0019975 Lotus japonicus HOM05D000041 ORTHO05D000061 3.6e-14 82.0 43 86.0
ClCG02G020600 Citrullus lanatus HOM05D000041 ORTHO05D000061 4.6e-14 81.6 101 48.5
Gorai.003G137700 Gossypium raimondii HOM05D000041 ORTHO05D000061 4.6e-14 81.6 46 84.8
Duzib150G1140 Durio zibethinus HOM05D000041 ORTHO05D000061 6.1e-14 81.3 46 82.6
VMungo1080G0186 Vigna mungo HOM05D000041 ORTHO05D000061 6.1e-14 81.3 44 84.1
CiPaw.14G074300 Carya illinoinensis HOM05D000041 ORTHO05D000061 7.9e-14 80.9 103 51.5
MELO3C025704.2 Cucumis melo HOM05D000041 ORTHO05D000061 7.9e-14 80.9 50 78.0
CsaV3_6G022040 Cucumis sativus L. HOM05D000041 ORTHO05D000061 7.9e-14 80.9 50 78.0
Glyma.12G074600 Glycine max HOM05D000041 ORTHO05D000061 7.9e-14 80.9 43 83.7
Gohir.A03G037500 Gossypium hirsutum HOM05D000041 ORTHO05D000061 7.9e-14 80.9 46 84.8
Gorai.001G107000 Gossypium raimondii HOM05D000041 ORTHO05D000061 7.9e-14 80.9 50 82.0
Sed0014280 Sechium edule HOM05D000041 ORTHO05D000061 7.9e-14 80.9 98 48.0
TAR320G0001 Trochodendron aralioides HOM05D000041 ORTHO05D000061 7.9e-14 80.9 53 71.7
TAR369G1145 Trochodendron aralioides HOM05D000041 ORTHO05D000061 7.9e-14 80.9 53 71.7
Glyma.11G146272 Glycine max HOM05D000041 ORTHO05D000061 1.0e-13 80.5 42 85.7
Lj3g0015304 Lotus japonicus HOM05D000041 ORTHO05D000061 1.0e-13 80.5 42 85.7
Sc12g0001820 Simmondsia chinensis HOM05D000041 ORTHO05D000061 1.0e-13 80.5 50 72.0
Phvul.011G069600 Phaseolus vulgaris HOM05D000041 ORTHO05D000061 1.4e-13 80.1 47 74.5
TPR.G2960 Trifolium pratense HOM05D000041 ORTHO05D000061 1.4e-13 80.1 53 71.7
VMungo1127G1833 Vigna mungo HOM05D000041 ORTHO05D000061 1.4e-13 80.1 42 85.7
Ah.13g076210 Amaranthus hybridus HOM05D000041 ORTHO05D000061 2.3e-13 79.3 54 68.5
AUR62024390 Chenopodium quinoa HOM05D000041 ORTHO05D000061 2.3e-13 79.3 49 77.6
AUR62025985 Chenopodium quinoa HOM05D000041 ORTHO05D000061 2.3e-13 79.3 49 77.6
Ca_19214_v3 Cicer arietinum L. HOM05D000041 ORTHO05D000061 2.3e-13 79.3 53 73.6
Haze_24003 Corylus avellana HOM05D000041 ORTHO05D000061 2.3e-13 79.3 100 46.0
arahy.Tifrunner.gnm1.ann1.2F9JPV Arachis hypogaea HOM05D000041 ORTHO05D000061 3.0e-13 79.0 47 76.6
arahy.Tifrunner.gnm1.ann1.H99LQC Arachis hypogaea HOM05D000041 ORTHO05D000061 3.0e-13 79.0 47 76.6
Cc01_g12080 Coffea canephora HOM05D000041 ORTHO05D000061 3.0e-13 79.0 53 69.8
DCAR_018869 Daucus carota HOM05D000041 ORTHO05D000061 3.0e-13 79.0 53 66.0
MD11G1117300 Malus domestica HOM05D000041 ORTHO05D000061 3.9e-13 78.6 100 50.0
CSS0016096 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 5.1e-13 78.2 53 66.0
Sc13g0001980 Simmondsia chinensis HOM05D000041 ORTHO05D000061 5.1e-13 78.2 51 66.7
EL10Ac7g15938 Beta vulgaris HOM05D000041 ORTHO05D000061 6.7e-13 77.8 104 44.2
Hund18945 Selenicereus undatus HOM05D000041 ORTHO05D000061 6.7e-13 77.8 50 70.0
Thhalv10012688m.g Eutrema salsugineum HOM05D000041 ORTHO05D000061 8.8e-13 77.4 85 55.3
Gorai.004G003200 Gossypium raimondii HOM05D000041 ORTHO05D000061 8.8e-13 77.4 50 74.0
MD03G1103600 Malus domestica HOM05D000041 ORTHO05D000061 8.8e-13 77.4 100 50.0
TAR633G0930 Trochodendron aralioides HOM05D000041 ORTHO05D000061 8.8e-13 77.4 53 64.2
CSS0010615 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 1.1e-12 77.0 47 74.5
CSS0046094 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 1.1e-12 77.0 47 74.5
Dinv26290 Davidia involucrata HOM05D000041 ORTHO05D000061 1.1e-12 77.0 53 64.2
Gohir.A08G000133 Gossypium hirsutum HOM05D000041 ORTHO05D000061 1.1e-12 77.0 50 74.0
Gohir.D08G010000 Gossypium hirsutum HOM05D000041 ORTHO05D000061 1.1e-12 77.0 50 74.0
Lj2C1047T7 Lonicera japonica HOM05D000041 ORTHO05D000061 1.1e-12 77.0 48 72.9
RcHm_v2.0_Chr5g0062291 Rosa chinensis HOM05D000041 ORTHO05D000061 1.1e-12 77.0 48 79.2
Prupe.6G087700 Prunus persica HOM05D000041 ORTHO05D000061 1.5e-12 76.6 100 49.0
CAN.G2195.1 Capsicum annuum HOM05D000041 ORTHO05D000061 1.9e-12 76.3 50 72.0
Gohir.D07G099300 Gossypium hirsutum HOM05D000041 ORTHO05D000061 1.9e-12 76.3 50 78.0
DCAR_015585 Daucus carota HOM05D000041 ORTHO05D000061 2.5e-12 75.9 50 68.0
Lalb_Chr01g0003901 Lupinus albus HOM05D000041 ORTHO05D000061 2.5e-12 75.9 43 79.1
Peaxi162Scf00411g00081 Petunia axillaris HOM05D000041 ORTHO05D000061 2.5e-12 75.9 50 72.0
Sp6g21370 Schrenkiella parvula HOM05D000041 ORTHO05D000061 3.3e-12 75.5 75 60.0
Solyc06g005230.3 Solanum lycopersicum HOM05D000041 ORTHO05D000061 3.3e-12 75.5 53 64.2
Solyc11g072910.1 Solanum lycopersicum HOM05D000041 ORTHO05D000061 3.3e-12 75.5 50 72.0
PGSC0003DMG400009689 Solanum tuberosum HOM05D000041 ORTHO05D000061 3.3e-12 75.5 53 64.2
Rhsim13G0088800 Rhododendron simsii HOM05D000041 ORTHO05D000061 4.3e-12 75.1 48 68.8
ECA248G1835 Erigeron canadensis HOM05D000041 ORTHO05D000061 5.7e-12 74.7 45 75.6
MSTRG.21168 Avicennia marina HOM05D000041 ORTHO05D000061 7.4e-12 74.3 51 64.7
Nitab4.5_0004207g0020 Nicotiana tabacum HOM05D000041 ORTHO05D000061 7.4e-12 74.3 50 70.0
Nitab4.5_0007030g0050 Nicotiana tabacum HOM05D000041 ORTHO05D000061 7.4e-12 74.3 50 70.0
Sopen11g030570 Solanum pennellii HOM05D000041 ORTHO05D000061 9.7e-12 73.9 46 76.1
PGSC0003DMG400015547 Solanum tuberosum HOM05D000041 ORTHO05D000061 9.7e-12 73.9 46 76.1
Actinidia07082 Actinidia chinensis HOM05D000041 ORTHO05D000061 1.3e-11 73.6 100 43.0
Oeu062301.1 Olea europaea HOM05D000041 ORTHO05D000061 1.3e-11 73.6 51 64.7
Sopen06g001210 Solanum pennellii HOM05D000041 ORTHO05D000061 1.3e-11 73.6 53 62.3
Ah.08g215010 Amaranthus hybridus HOM05D000041 ORTHO05D000061 1.7e-11 73.2 60 58.3
CAN.G241.22 Capsicum annuum HOM05D000041 ORTHO05D000061 1.7e-11 73.2 50 66.0
Hma1.2p1_0746F.1_g212320 Hydrangea macrophylla HOM05D000041 ORTHO05D000061 1.7e-11 73.2 49 67.3
vmacro03133 Vaccinium macrocarpon HOM05D000041 ORTHO05D000061 1.7e-11 73.2 48 68.8
EL10Ac3g07010 Beta vulgaris HOM05D000041 ORTHO05D000061 2.8e-11 72.4 100 44.0
Oeu012679.1 Olea europaea HOM05D000041 ORTHO05D000061 3.7e-11 72.0 53 62.3
HanXRQChr09g0259951 Helianthus annuus HOM05D000041 ORTHO05D000061 4.8e-11 71.6 45 71.1
Nitab4.5_0001887g0050 Nicotiana tabacum HOM05D000041 ORTHO05D000061 6.3e-11 71.2 53 62.3
CARHR273270 Cardamine hirsuta HOM05D000041 ORTHO05D000061 8.2e-11 70.9 61 67.2
Gohir.A07G095000 Gossypium hirsutum HOM05D000041 ORTHO05D000061 8.2e-11 70.9 50 76.0
Prupe.6G087900 Prunus persica HOM05D000041 ORTHO05D000061 8.2e-11 70.9 42 78.6
Lsat_1_v5_gn_5_159001 Lactuca sativa HOM05D000041 ORTHO05D000061 1.1e-10 70.5 45 68.9
Migut.N02648 Erythranthe guttata HOM05D000041 ORTHO05D000061 1.4e-10 70.1 56 55.4
Dinv32864 Davidia involucrata HOM05D000041 ORTHO05D000061 1.8e-10 69.7 50 62.0
Lj1C177T3 Lonicera japonica HOM05D000041 ORTHO05D000061 1.8e-10 69.7 50 68.0
Nitab4.5_0007102g0020 Nicotiana tabacum HOM05D000041 ORTHO05D000061 2.4e-10 69.3 77 53.2
SalBow3G2332 Salvia bowleyana HOM05D000041 ORTHO05D000061 2.4e-10 69.3 43 69.8
Ah.15g096370 Amaranthus hybridus HOM05D000041 ORTHO05D000061 3.1e-10 68.9 48 64.6
BolC9t58084H Brassica oleracea HOM05D000041 ORTHO05D000061 3.1e-10 68.9 80 56.2
BcaC04g19623 Brassica carinata HOM05D000041 ORTHO05D000061 5.3e-10 68.2 75 56.0
A10p16930 Brassica napus HOM05D000041 ORTHO05D000061 5.3e-10 68.2 75 56.0
C09p52200 Brassica napus HOM05D000041 ORTHO05D000061 5.3e-10 68.2 75 56.0
BraA10t43775Z Brassica rapa HOM05D000041 ORTHO05D000061 5.3e-10 68.2 75 56.0
BcaB08g36226 Brassica carinata HOM05D000041 ORTHO05D000061 6.9e-10 67.8 83 51.8
CAN.G1002.27 Capsicum annuum HOM05D000041 ORTHO05D000061 3.4e-09 65.5 55 60.0
HanXRQChr13g0392051 Helianthus annuus HOM05D000041 ORTHO05D000061 3.4e-09 65.5 51 62.7
Nn2g12833 Nelumbo nucifera HOM05D000041 ORTHO05D000061 4.5e-09 65.1 55 54.5
Nitab4.5_0002255g0020 Nicotiana tabacum HOM05D000041 ORTHO05D000061 4.5e-09 65.1 54 61.1
PSO339G2200 Papaver somniferum HOM05D000041 ORTHO05D000061 4.5e-09 65.1 41 68.3
PSO384G2034 Papaver somniferum HOM05D000041 ORTHO05D000061 2.2e-08 62.8 41 68.3
SGA_v2.0_scaffold104G30114 Striga asiatica HOM05D000041 ORTHO05D000061 2.2e-08 62.8 47 63.8
PSO384G3171 Papaver somniferum HOM05D000041 ORTHO05D000061 2.9e-08 62.4 60 43.3
MSTRG.12626 Avicennia marina HOM05D000041 ORTHO05D000061 3.8e-08 62.0 46 63.0
Aqoxy4G03089 Aquilegia oxysepala HOM05D000041 ORTHO05D000061 6.5e-08 61.2 53 52.8
PSO699G0066 Papaver somniferum HOM05D000041 ORTHO05D000061 8.5e-08 60.8 60 41.7
Sed0001651 Sechium edule HOM05D000041 ORTHO05D000061 8.5e-08 60.8 32 90.6
ATR1159G016 Amborella trichopoda HOM05D000041 ORTHO05D000061 1.9e-07 59.7 53 52.8
PGSC0003DMG400007780 Solanum tuberosum HOM05D000041 ORTHO05D000061 2.5e-07 59.3 53 58.5
SGA_v2.0_scaffold194G40731 Striga asiatica HOM05D000041 ORTHO05D000061 2.5e-07 59.3 46 56.5
SEGI_02426 Sequoiadendron giganteum HOM05D000041 ORTHO05D000061 7.2e-07 57.8 67 47.8
SEGI_23811 Sequoiadendron giganteum HOM05D000041 ORTHO05D000061 7.2e-07 57.8 49 53.1
PGSC0003DMG400030288 Solanum tuberosum HOM05D000041 ORTHO05D000061 7.2e-07 57.8 53 60.4
AUR62015615 Chenopodium quinoa HOM05D000041 ORTHO05D000061 1.6e-06 56.6 52 61.5
AUR62029327 Chenopodium quinoa HOM05D000041 ORTHO05D000061 1.6e-06 56.6 52 61.5
PGSC0003DMG400013498 Solanum tuberosum HOM05D000041 ORTHO05D000061 1.6e-06 56.6 53 58.5
Ah.06g183630 Amaranthus hybridus HOM05D000041 ORTHO05D000061 2.1e-06 56.2 105 38.1
PGSC0003DMG400037460 Solanum tuberosum HOM05D000041 ORTHO05D000061 2.7e-06 55.8 53 56.6
SEGI_14258 Sequoiadendron giganteum HOM05D000041 ORTHO05D000061 3.6e-06 55.5 61 49.2
Gohir.D10G222600 Gossypium hirsutum HOM05D000041 ORTHO05D000061 4.7e-06 55.1 47 59.6
Gorai.011G253000 Gossypium raimondii HOM05D000041 ORTHO05D000061 4.7e-06 55.1 47 59.6
arahy.Tifrunner.gnm1.ann1.FHKG10 Arachis hypogaea HOM05D000041 ORTHO05D000061 6.1e-06 54.7 54 57.4
MBI14_g29799_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D000061 6.1e-06 54.7 67 47.8
ATR0693G277 Amborella trichopoda HOM05D000041 ORTHO05D000061 7.9e-06 54.3 51 52.9
EL10Ac4g08083 Beta vulgaris HOM05D000041 ORTHO05D000061 7.9e-06 54.3 52 59.6
Cc02_g08370 Coffea canephora HOM05D000041 ORTHO05D000061 7.9e-06 54.3 81 39.5


User provided reference genes

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