Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01866 Brassica carinata HOM05D003137 ORTHO05D003433 4.2e-43 177.6 85 100.0
C09p54190 Brassica napus HOM05D003137 ORTHO05D003433 3.2e-27 124.8 79 73.4
BcaB01g03986 Brassica carinata HOM05D003137 ORTHO05D003433 1.6e-26 122.5 82 67.1
BcaC01g05910 Brassica carinata HOM05D003137 ORTHO05D003433 1.6e-26 122.5 82 67.1
C03p21160 Brassica napus HOM05D003137 ORTHO05D003433 1.6e-26 122.5 82 67.1
BolC3t14499H Brassica oleracea HOM05D003137 ORTHO05D003433 1.6e-26 122.5 82 67.1
A01p22150 Brassica napus HOM05D001420 ORTHO05D003433 2.1e-26 122.1 80 71.2
A03p39250 Brassica napus HOM05D001420 ORTHO05D003433 3.5e-26 121.3 80 70.0
Thhalv10016614m.g Eutrema salsugineum HOM05D003137 ORTHO05D003433 4.6e-26 120.9 82 64.6
AL4G27690 Arabidopsis lyrata HOM05D003137 ORTHO05D003433 7.9e-26 120.2 82 64.6
A03p18130 Brassica napus HOM05D003137 ORTHO05D003433 7.9e-26 120.2 82 65.9
BraA03t11072Z Brassica rapa HOM05D003137 ORTHO05D003433 7.9e-26 120.2 82 65.9
Sp4g14700 Schrenkiella parvula HOM05D003137 ORTHO05D003433 1.8e-25 119.0 82 63.4
BolC9t58293H Brassica oleracea HOM05D003137 ORTHO05D003433 2.3e-25 118.6 82 64.6
BolC5t32375H Brassica oleracea HOM05D003137 ORTHO05D003433 5.1e-25 117.5 82 64.6
CARHR126140 Cardamine hirsuta HOM05D003137 ORTHO05D003433 8.7e-25 116.7 82 63.4
AT2G32295 Arabidopsis thaliana HOM05D003137 ORTHO05D003433 1.9e-24 115.5 82 61.0
BraA03t13076Z Brassica rapa HOM05D003137 ORTHO05D003433 1.9e-24 115.5 68 75.0
C04p61380 Brassica napus HOM05D003137 ORTHO05D003433 3.3e-24 114.8 82 63.4
BolC4t27622H Brassica oleracea HOM05D003137 ORTHO05D003433 3.3e-24 114.8 82 63.4
Carub.0004s1367 Capsella rubella HOM05D003137 ORTHO05D003433 9.6e-24 113.2 82 59.8
C02p21320 Brassica napus HOM05D003137 ORTHO05D003433 1.3e-23 112.8 82 64.6
Aa31LG5G4220 Aethionema arabicum HOM05D003137 ORTHO05D003433 1.6e-23 112.5 82 58.5
THA.LOC104800980 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 8.4e-20 100.1 82 51.2
ClCG04G004390 Citrullus lanatus HOM05D003137 ORTHO05D003433 3.2e-19 98.2 75 53.3
Duzib132G0891 Durio zibethinus HOM05D003137 ORTHO05D003433 4.2e-19 97.8 75 54.7
vmacro14192 Vaccinium macrocarpon HOM05D003137 ORTHO05D003433 3.5e-18 94.7 75 53.3
CAN.G655.3 Capsicum annuum HOM05D003137 ORTHO05D003433 6.0e-18 94.0 75 52.0
THA.LOC104802010 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 6.0e-18 94.0 82 48.8
Ciclev10020261m.g Citrus clementina HOM05D003137 ORTHO05D003433 7.9e-18 93.6 82 50.0
MELO3C019066.2 Cucumis melo HOM05D003137 ORTHO05D003433 7.9e-18 93.6 82 48.8
CsaV3_4G029720 Cucumis sativus L. HOM05D003137 ORTHO05D003433 7.9e-18 93.6 82 48.8
Lj8C37T5 Lonicera japonica HOM05D003137 ORTHO05D003433 7.9e-18 93.6 82 48.8
Nitab4.5_0000110g0420 Nicotiana tabacum HOM05D003137 ORTHO05D003433 7.9e-18 93.6 75 52.0
QL08p033861 Quercus lobata HOM05D003137 ORTHO05D003433 7.9e-18 93.6 82 48.8
SGA_v2.0_scaffold24G10245 Striga asiatica HOM05D003137 ORTHO05D003433 7.9e-18 93.6 82 48.8
Thecc.02G162600 Theobroma cacao HOM05D003137 ORTHO05D003433 7.9e-18 93.6 82 48.8
Ah.09g232930 Amaranthus hybridus HOM05D001132 ORTHO05D003433 1.0e-17 93.2 82 48.8
COL.COLO4_12992 Corchorus olitorius HOM05D003137 ORTHO05D003433 1.0e-17 93.2 82 48.8
Manes.13G073300 Manihot esculenta HOM05D003137 ORTHO05D003433 1.0e-17 93.2 82 47.6
Nn4g22018 Nelumbo nucifera HOM05D003137 ORTHO05D003433 1.0e-17 93.2 82 48.8
Nn7g38434 Nelumbo nucifera HOM05D003137 ORTHO05D003433 1.0e-17 93.2 82 48.8
Rhsim07G0131000 Rhododendron simsii HOM05D003137 ORTHO05D003433 1.0e-17 93.2 82 50.0
Sed0002741 Sechium edule HOM05D003137 ORTHO05D003433 1.0e-17 93.2 82 48.8
Sc21g0001670 Simmondsia chinensis HOM05D003137 ORTHO05D003433 1.0e-17 93.2 82 48.8
PGSC0003DMG400031494 Solanum tuberosum HOM05D003137 ORTHO05D003433 1.0e-17 93.2 78 51.3
Atru.chr6.3141 Acer truncatum HOM05D003137 ORTHO05D003433 1.3e-17 92.8 82 48.8
Aa31LG5G17560 Aethionema arabicum HOM05D003137 ORTHO05D003433 1.3e-17 92.8 82 48.8
BolC9t57445H Brassica oleracea HOM05D003137 ORTHO05D003433 1.3e-17 92.8 64 70.3
Cpa.g.sc8.238 Carica papaya HOM05D003137 ORTHO05D003433 1.3e-17 92.8 72 56.9
Ciclev10015128m.g Citrus clementina HOM05D003137 ORTHO05D003433 1.3e-17 92.8 82 47.6
MBI13_g32436_MAGBIO Magnolia biondii HOM05D003137 ORTHO05D003433 1.3e-17 92.8 72 54.2
SGA_v2.0_scaffold48G18065 Striga asiatica HOM05D003137 ORTHO05D003433 1.3e-17 92.8 82 51.2
AL7G44570 Arabidopsis lyrata HOM05D003137 ORTHO05D003433 1.8e-17 92.4 82 47.6
BcaB06g26976 Brassica carinata HOM05D003137 ORTHO05D003433 1.8e-17 92.4 82 47.6
BcaC02g09490 Brassica carinata HOM05D003137 ORTHO05D003433 1.8e-17 92.4 82 47.6
A04p09900 Brassica napus HOM05D003137 ORTHO05D003433 1.8e-17 92.4 82 47.6
C04p43380 Brassica napus HOM05D003137 ORTHO05D003433 1.8e-17 92.4 82 47.6
C08p40320 Brassica napus HOM05D003137 ORTHO05D003433 1.8e-17 92.4 81 58.0
BolC4t25916H Brassica oleracea HOM05D003137 ORTHO05D003433 1.8e-17 92.4 82 47.6
BolC8t51600H Brassica oleracea HOM05D003137 ORTHO05D003433 1.8e-17 92.4 81 58.0
BraA04t16653Z Brassica rapa HOM05D003137 ORTHO05D003433 1.8e-17 92.4 82 47.6
Carub.0007s3147 Capsella rubella HOM05D003137 ORTHO05D003433 1.8e-17 92.4 82 47.6
CARHR216920 Cardamine hirsuta HOM05D003137 ORTHO05D003433 1.8e-17 92.4 82 47.6
Thhalv10004243m.g Eutrema salsugineum HOM05D003137 ORTHO05D003433 1.8e-17 92.4 82 47.6
Potri.007G121400 Populus trichocarpa HOM05D003137 ORTHO05D003433 1.8e-17 92.4 82 46.3
AUR62027561 Chenopodium quinoa HOM05D003137 ORTHO05D003433 2.3e-17 92.0 82 47.6
AUR62035796 Chenopodium quinoa HOM05D003137 ORTHO05D003433 2.3e-17 92.0 82 47.6
Nn6g34282 Nelumbo nucifera HOM05D003137 ORTHO05D003433 2.3e-17 92.0 82 47.6
Sp7g06520 Schrenkiella parvula HOM05D003137 ORTHO05D003433 2.3e-17 92.0 82 47.6
Actinidia11210 Actinidia chinensis HOM05D003137 ORTHO05D003433 3.0e-17 91.7 82 48.8
Dinv39684 Davidia involucrata HOM05D003137 ORTHO05D003433 3.0e-17 91.7 82 48.8
Eucgr.K00863 Eucalyptus grandis HOM05D003137 ORTHO05D003433 3.0e-17 91.7 82 47.6
Potri.017G039000 Populus trichocarpa HOM05D003137 ORTHO05D003433 3.0e-17 91.7 82 46.3
Zm00001eb135290 Zea mays HOM05D003137 ORTHO05D003433 3.0e-17 91.7 82 47.6
AT5G35730 Arabidopsis thaliana HOM05D003137 ORTHO05D003433 3.9e-17 91.3 82 46.3
MSTRG.25153 Avicennia marina HOM05D003137 ORTHO05D003433 3.9e-17 91.3 82 45.1
HanXRQChr17g0560951 Helianthus annuus HOM05D003137 ORTHO05D003433 3.9e-17 91.3 82 47.6
Os12g0595000 Oryza sativa ssp. japonica HOM05D003137 ORTHO05D003433 3.9e-17 91.3 82 47.6
Prupe.2G153500 Prunus persica HOM05D003137 ORTHO05D003433 3.9e-17 91.3 71 56.3
PGR042G2833 Punica granatum HOM05D003137 ORTHO05D003433 3.9e-17 91.3 82 46.3
SHI10274 Sapria himalayana HOM05D003137 ORTHO05D003433 3.9e-17 91.3 82 48.8
Gorai.002G016400 Gossypium raimondii HOM05D003137 ORTHO05D003433 5.1e-17 90.9 82 46.3
Prupe.3G220700 Prunus persica HOM05D003137 ORTHO05D003433 5.1e-17 90.9 82 46.3
THA.LOC104827598 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 5.1e-17 90.9 82 47.6
CAN.G1126.28 Capsicum annuum HOM05D003137 ORTHO05D003433 6.7e-17 90.5 82 46.3
CiPaw.03G163200 Carya illinoinensis HOM05D003137 ORTHO05D003433 6.7e-17 90.5 82 47.6
Haze_12901 Corylus avellana HOM05D003137 ORTHO05D003433 6.7e-17 90.5 62 61.3
Gohir.A01G013400 Gossypium hirsutum HOM05D003137 ORTHO05D003433 6.7e-17 90.5 82 46.3
MD17G1092500 Malus domestica HOM05D003137 ORTHO05D003433 6.7e-17 90.5 82 47.6
Nitab4.5_0003246g0110 Nicotiana tabacum HOM05D003137 ORTHO05D003433 6.7e-17 90.5 76 52.6
SalBow7G2186 Salvia bowleyana HOM05D003137 ORTHO05D003433 6.7e-17 90.5 82 47.6
EL10Ac8g19786 Beta vulgaris HOM05D003137 ORTHO05D003433 8.7e-17 90.1 82 46.3
Cfa014440 Carpinus fangiana HOM05D003137 ORTHO05D003433 8.7e-17 90.1 65 56.9
Gohir.D11G088700 Gossypium hirsutum HOM05D003137 ORTHO05D003433 8.7e-17 90.1 82 47.6
Lj3g0011099 Lotus japonicus HOM05D003137 ORTHO05D003433 8.7e-17 90.1 82 48.8
Actinidia32508 Actinidia chinensis HOM05D003137 ORTHO05D003433 1.1e-16 89.7 82 47.6
COL.COLO4_12634 Corchorus olitorius HOM05D003137 ORTHO05D003433 1.1e-16 89.7 82 48.8
Duzib133G1508 Durio zibethinus HOM05D003137 ORTHO05D003433 1.1e-16 89.7 82 47.6
MD09G1104800 Malus domestica HOM05D003137 ORTHO05D003433 1.1e-16 89.7 82 47.6
Medtr2g088870 Medicago truncatula HOM05D003137 ORTHO05D003433 1.1e-16 89.7 82 47.6
SalBow6G6965 Salvia bowleyana HOM05D003137 ORTHO05D003433 1.1e-16 89.7 82 47.6
GSVIVG01030627001 Vitis vinifera HOM05D003137 ORTHO05D003433 1.1e-16 89.7 82 46.3
CiPaw.04G118000 Carya illinoinensis HOM05D003137 ORTHO05D003433 1.5e-16 89.4 82 47.6
Cc10_g03200 Coffea canephora HOM05D003137 ORTHO05D003433 1.5e-16 89.4 82 47.6
ECA233G5037 Erigeron canadensis HOM05D003137 ORTHO05D003433 1.5e-16 89.4 82 47.6
Glyma.12G196001 Glycine max HOM05D003137 ORTHO05D003433 1.5e-16 89.4 82 47.6
Gohir.D01G014700 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.5e-16 89.4 82 45.1
Gorai.007G094800 Gossypium raimondii HOM05D003137 ORTHO05D003433 1.5e-16 89.4 82 47.6
Thecc.01G369700 Theobroma cacao HOM05D003137 ORTHO05D003433 1.5e-16 89.4 82 47.6
Ah.14g086720 Amaranthus hybridus HOM05D003137 ORTHO05D003433 1.9e-16 89.0 72 54.2
Migut.C00698 Erythranthe guttata HOM05D003137 ORTHO05D003433 1.9e-16 89.0 82 45.1
Gohir.A11G084600 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.9e-16 89.0 82 47.6
PGSC0003DMG402027860 Solanum tuberosum HOM05D003137 ORTHO05D003433 1.9e-16 89.0 82 46.3
CSS0047433 Camellia sinensis var. sinensis HOM05D003137 ORTHO05D003433 2.5e-16 88.6 82 46.3
FAN05G0260 Fragaria x ananassa HOM05D003137 ORTHO05D003433 2.5e-16 88.6 82 43.9
FAN09G4236 Fragaria x ananassa HOM05D003137 ORTHO05D003433 2.5e-16 88.6 82 43.9
RcHm_v2.0_Chr2g0160141 Rosa chinensis HOM05D003137 ORTHO05D003433 2.5e-16 88.6 82 45.1
Sabra17G0026100 Salix brachista HOM05D003137 ORTHO05D003433 2.5e-16 88.6 72 51.4
TPR.G4191 Trifolium pratense HOM05D003137 ORTHO05D003433 2.5e-16 88.6 82 45.1
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 2.5e-16 88.6 78 51.3
CSS0004570 Camellia sinensis var. sinensis HOM05D003137 ORTHO05D003433 3.3e-16 88.2 82 46.3
Solyc07g022830.3 Solanum lycopersicum HOM05D003137 ORTHO05D003433 3.3e-16 88.2 82 46.3
TWI18G1074 Tripterygium wilfordii HOM05D003137 ORTHO05D003433 3.3e-16 88.2 82 45.1
Duzib138G0678 Durio zibethinus HOM05D003137 ORTHO05D003433 4.3e-16 87.8 82 47.6
Glyma.09G263700 Glycine max HOM05D003137 ORTHO05D003433 4.3e-16 87.8 82 47.6
PSO782G4462 Papaver somniferum HOM05D003137 ORTHO05D003433 4.3e-16 87.8 82 45.1
Solyc04g080050.4 Solanum lycopersicum HOM05D003137 ORTHO05D003433 4.3e-16 87.8 82 45.1
Sopen04g033640 Solanum pennellii HOM05D003137 ORTHO05D003433 4.3e-16 87.8 82 45.1
Sopen07g012160 Solanum pennellii HOM05D003137 ORTHO05D003433 5.7e-16 87.4 82 45.1
ATR0787G213 Amborella trichopoda HOM05D003137 ORTHO05D003433 7.4e-16 87.0 82 45.1
Aqoxy7G03817 Aquilegia oxysepala HOM05D003137 ORTHO05D003433 7.4e-16 87.0 82 45.1
CANSAT64G2088 Cannabis sativa HOM05D003137 ORTHO05D003433 7.4e-16 87.0 82 46.3
Dinv15027 Davidia involucrata HOM05D003137 ORTHO05D003433 7.4e-16 87.0 62 59.7
FvH4_6g43560 Fragaria vesca HOM05D003137 ORTHO05D003433 7.4e-16 87.0 82 43.9
FAN08G1693 Fragaria x ananassa HOM05D003137 ORTHO05D003433 7.4e-16 87.0 82 42.7
Hma1.2p1_0613F.1_g189210 Hydrangea macrophylla HOM05D003137 ORTHO05D003433 7.4e-16 87.0 77 49.4
Phvul.005G113400 Phaseolus vulgaris HOM05D003137 ORTHO05D003433 7.4e-16 87.0 82 45.1
VMungo1080G0481 Vigna mungo HOM05D003137 ORTHO05D003433 7.4e-16 87.0 82 45.1
arahy.Tifrunner.gnm1.ann1.VG7JT5 Arachis hypogaea HOM05D003137 ORTHO05D003433 9.7e-16 86.7 82 45.1
DCAR_020205 Daucus carota HOM05D003137 ORTHO05D003433 9.7e-16 86.7 62 58.1
Glyma.13G306500 Glycine max HOM05D003137 ORTHO05D003433 9.7e-16 86.7 82 45.1
Medtr7g076560 Medicago truncatula HOM05D003137 ORTHO05D003433 9.7e-16 86.7 82 47.6
PSO478G0754 Papaver somniferum HOM05D003137 ORTHO05D003433 9.7e-16 86.7 82 45.1
Phvul.008G069800 Phaseolus vulgaris HOM05D003137 ORTHO05D003433 9.7e-16 86.7 82 46.3
Gohir.A12G103350 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.3e-15 86.3 82 46.3
Gorai.008G116200 Gossypium raimondii HOM05D003137 ORTHO05D003433 1.3e-15 86.3 82 46.3
Lsat_1_v5_gn_8_129381 Lactuca sativa HOM05D003137 ORTHO05D003433 1.3e-15 86.3 82 45.1
FAN14G4002 Fragaria x ananassa HOM05D003137 ORTHO05D003433 1.6e-15 85.9 82 42.7
Psat3g112160 Pisum sativum HOM05D003137 ORTHO05D003433 1.6e-15 85.9 82 45.1
Glyma.18G228400 Glycine max HOM05D003137 ORTHO05D003433 2.2e-15 85.5 82 46.3
Oeu016738.1 Olea europaea HOM05D003137 ORTHO05D003433 2.2e-15 85.5 82 45.1
arahy.Tifrunner.gnm1.ann1.HIPE1N Arachis hypogaea HOM05D003137 ORTHO05D003433 2.8e-15 85.1 82 43.9
arahy.Tifrunner.gnm1.ann1.U40R6G Arachis hypogaea HOM05D003137 ORTHO05D003433 2.8e-15 85.1 82 43.9
Lj1g0004776 Lotus japonicus HOM05D003137 ORTHO05D003433 2.8e-15 85.1 82 46.3
Lalb_Chr01g0005541 Lupinus albus HOM05D003137 ORTHO05D003433 2.8e-15 85.1 82 46.3
Peaxi162Scf00057g00421 Petunia axillaris HOM05D003137 ORTHO05D003433 3.7e-15 84.7 72 50.0
VMungo1383G1713 Vigna mungo HOM05D003137 ORTHO05D003433 4.8e-15 84.3 82 43.9
HPP92_010507 Vanilla planifolia HOM05D003137 ORTHO05D003433 6.3e-15 84.0 82 43.9
CDE09G0481 Ceratophyllum demersum HOM05D003137 ORTHO05D003433 8.2e-15 83.6 82 43.9
Lalb_Chr01g0021071 Lupinus albus HOM05D003137 ORTHO05D003433 2.4e-14 82.0 82 43.9
RcHm_v2.0_Chr1g0352051 Rosa chinensis HOM05D003137 ORTHO05D003433 2.4e-14 82.0 88 44.3
TWI75G1854 Tripterygium wilfordii HOM05D003137 ORTHO05D003433 4.1e-14 81.3 62 56.5
arahy.Tifrunner.gnm1.ann1.D87ERS Arachis hypogaea HOM05D003137 ORTHO05D003433 9.0e-14 80.1 62 51.6
Lalb_Chr24g0393061 Lupinus albus HOM05D003137 ORTHO05D003433 1.2e-13 79.7 83 43.4
FAN02G1637 Fragaria x ananassa HOM05D003137 ORTHO05D003433 2.0e-13 79.0 81 44.4
SMO367G1117 Selaginella moellendorffii HOM05D003137 ORTHO05D003433 2.0e-13 79.0 66 54.5
SEGI_18577 Sequoiadendron giganteum HOM05D003137 ORTHO05D003433 2.6e-13 78.6 85 43.5
Pp3c9_25080 Physcomitrium patens HOM05D003137 ORTHO05D003433 6.5e-12 73.9 82 39.0
MBI11_g02542_MAGBIO Magnolia biondii HOM05D003137 ORTHO05D003433 8.5e-12 73.6 95 40.0
CBR_g2888 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-11 72.8 63 50.8
Pp3c15_24780 Physcomitrium patens HOM05D003137 ORTHO05D003433 1.4e-11 72.8 82 40.2
Mapoly0008s0085 Marchantia polymorpha HOM05D003137 ORTHO05D003433 4.2e-11 71.2 81 40.7
Mapoly0060s0006 Marchantia polymorpha HOM05D003137 ORTHO05D003433 1.0e-09 66.6 62 48.4
C08p43710 Brassica napus HOM05D003137 ORTHO05D003433 3.0e-09 65.1 82 41.5
RcHm_v2.0_Chr2g0127371 Rosa chinensis HOM05D003137 ORTHO05D003433 1.1e-08 63.2 69 43.5
TAR365G0865 Trochodendron aralioides HOM05D003137 ORTHO05D003433 1.9e-08 62.4 59 45.8
Gohir.D12G106800 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.3e-07 59.7 59 44.1
AagrBONN_evm.TU.Sc2ySwM_117.2028 Anthoceros agrestis HOM05D003137 ORTHO05D003433 3.7e-07 58.2 55 43.6
Hund21479 Selenicereus undatus HOM05D003137 ORTHO05D003433 6.3e-07 57.4 75 37.3


User provided reference genes

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