Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 1.4e-229 799.3 403 100.0
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 1.4e-229 799.3 403 100.0
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 1.9e-226 788.9 403 99.0
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 1.8e-221 772.3 403 97.0
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 1.8e-221 772.3 403 97.0
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 1.1e-210 736.5 395 94.4
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 1.5e-207 726.1 403 90.8
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 3.2e-202 708.4 410 87.8
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 1.3e-200 703.0 410 87.3
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 5.1e-200 701.0 406 88.4
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 4.3e-199 698.0 405 88.1
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 1.4e-197 693.0 410 85.6
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 9.7e-175 617.1 391 81.6
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 1.4e-168 596.7 425 72.9
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 8.9e-152 540.8 458 66.2
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 1.8e-136 490.0 418 63.4
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 6.8e-136 488.0 431 61.0
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.2e-135 487.3 422 61.8
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 1.7e-134 483.4 397 64.7
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.1e-133 480.7 414 62.3
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 2.7e-132 476.1 398 64.6
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 2.7e-132 476.1 424 61.8
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.0e-131 474.2 397 64.7
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 3.9e-131 472.2 397 63.5
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 3.9e-131 472.2 419 61.3
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 5.1e-131 471.9 433 59.4
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 6.6e-131 471.5 410 62.0
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.1e-130 470.7 379 66.8
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 1.5e-130 470.3 417 60.2
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.9e-130 469.9 386 65.8
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 7.3e-130 468.0 429 59.9
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 1.2e-129 467.2 421 61.0
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 1.6e-129 466.8 417 59.5
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 2.8e-129 466.1 434 59.0
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 4.7e-129 465.3 426 60.3
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 8.1e-129 464.5 410 59.8
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 1.8e-128 463.4 424 58.7
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 5.2e-128 461.8 386 62.7
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 8.9e-128 461.1 410 60.0
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 1.2e-127 460.7 429 59.4
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 2.0e-127 459.9 434 58.8
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 2.0e-127 459.9 409 60.6
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.0e-127 459.9 384 62.2
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 2.6e-127 459.5 389 62.7
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 3.4e-127 459.1 438 57.8
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 4.4e-127 458.8 428 58.9
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 4.4e-127 458.8 433 57.7
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 4.4e-127 458.8 399 62.4
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 5.8e-127 458.4 430 60.0
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 5.8e-127 458.4 418 58.4
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 7.6e-127 458.0 381 64.0
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 7.6e-127 458.0 426 59.9
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 6.4e-126 454.9 432 58.3
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 1.1e-125 454.1 432 58.3
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 1.1e-125 454.1 395 60.0
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.9e-125 453.4 425 59.3
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 7.1e-125 451.4 428 58.2
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 1.2e-124 450.7 399 62.7
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 2.1e-124 449.9 422 59.5
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 2.5e-122 443.0 434 56.9
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 5.6e-122 441.8 395 60.3
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 7.3e-122 441.4 450 54.9
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 2.8e-121 439.5 385 60.8
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 1.4e-120 437.2 375 63.5
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 1.4e-120 437.2 438 57.3
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 2.4e-120 436.4 387 61.2
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 8.9e-120 434.5 376 61.2
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 1.2e-119 434.1 374 62.0
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 2.0e-119 433.3 434 55.3
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 2.6e-119 433.0 386 60.9
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 3.4e-119 432.6 436 54.4
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 9.9e-119 431.0 378 61.1
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 6.4e-118 428.3 438 54.6
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 8.4e-118 427.9 392 59.9
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 1.1e-117 427.6 376 62.2
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 5.4e-117 425.2 393 58.5
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 7.1e-117 424.9 378 60.3
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 7.1e-117 424.9 384 60.4
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 2.1e-116 423.3 380 59.7
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 1.0e-115 421.0 385 61.6
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 3.0e-115 419.5 411 56.9
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 3.9e-115 419.1 393 57.8
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.5e-114 417.2 391 59.6
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 1.5e-114 417.2 412 57.8
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 2.5e-114 416.4 411 56.7
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 1.1e-112 411.0 379 59.9
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.5e-111 407.1 407 56.5
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 4.5e-111 405.6 430 52.1
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 7.6e-111 404.8 381 58.5
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 1.3e-110 404.1 362 60.8
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.9e-109 400.2 396 57.3
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 1.2e-108 397.5 364 59.9
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 7.9e-108 394.8 355 60.8
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 7.9e-108 394.8 465 50.5
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 6.7e-107 391.7 349 61.6
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 1.6e-105 387.1 386 57.5
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 6.2e-105 385.2 361 59.3
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 6.2e-105 385.2 373 55.8
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 9.0e-104 381.3 337 63.2
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 2.2e-102 376.7 336 63.7
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 8.2e-97 358.2 404 51.7
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 6.1e-84 315.5 293 58.0
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 3.8e-78 296.2 244 64.8
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 1.8e-75 287.3 393 44.0
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.1e-74 284.6 350 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 7.4e-74 282.0 395 44.8
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 1.8e-72 277.3 392 42.3
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 1.8e-72 277.3 392 42.3
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 2.3e-67 260.4 157 84.1
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 4.0e-35 153.3 371 32.3
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 8.3e-33 145.6 120 63.3
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 8.3e-33 145.6 158 51.9
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.2e-31 141.7 127 59.8
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 4.3e-29 133.3 321 32.1
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 2.8e-20 104.0 84 65.5
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 2.9e-17 94.0 190 35.8
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 4.6e-15 86.7 141 39.0
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 1.2e-12 78.6 46 69.6
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 1.1e-11 75.5 46 69.6
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 1.1e-11 75.5 46 69.6
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 1.2e-10 72.0 48 66.7
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.7e-09 68.2 89 50.6
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 3.8e-09 67.0 50 60.0
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.5e-07 60.5 89 47.2


User provided reference genes

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