Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 1.2e-68 263.1 140 100.0
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 1.3e-62 243.0 140 95.0
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 1.1e-61 240.0 141 95.0
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 6.2e-60 234.2 141 94.3
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 8.9e-59 230.3 141 79.4
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 2.4e-40 169.1 140 74.3
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 7.1e-40 167.5 140 73.6
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 5.6e-37 157.9 140 71.4
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 5.3e-35 151.4 140 69.3
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 9.0e-35 150.6 141 66.7
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 9.0e-35 150.6 140 69.3
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 9.0e-35 150.6 140 69.3
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 1.2e-34 150.2 141 56.0
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 1.2e-34 150.2 140 70.0
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 1.5e-34 149.8 141 69.5
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 9.9e-34 147.1 142 60.6
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 9.9e-34 147.1 140 67.9
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 8.4e-33 144.1 140 65.7
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 6.0e-31 137.9 141 61.0
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 9.6e-29 130.6 141 65.2
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 1.1e-27 127.1 96 78.1
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 4.6e-23 111.7 143 58.7
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 6.7e-22 107.8 141 44.7
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 6.7e-22 107.8 99 49.5
C03p67010 Brassica napus HOM05D003537 ORTHO05D004180 9.6e-21 104.0 143 48.3
BolC3t18976H Brassica oleracea HOM05D003537 ORTHO05D004180 9.6e-21 104.0 143 48.3
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.8e-20 102.4 88 51.1
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.8e-20 102.4 140 41.4
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 3.7e-20 102.1 96 63.5
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 4.8e-20 101.7 89 67.4
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 4.8e-20 101.7 86 70.9
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 6.2e-20 101.3 96 61.5
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 8.1e-20 100.9 139 40.3
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.4e-19 100.1 136 47.8
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 2.4e-19 99.4 83 68.7
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.4e-19 99.4 88 67.0
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 3.1e-19 99.0 83 59.0
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 5.3e-19 98.2 83 53.0
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 6.9e-19 97.8 142 41.5
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 9.0e-19 97.4 96 62.5
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 1.2e-18 97.1 88 52.3
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.6e-18 95.9 148 42.6
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 2.6e-18 95.9 83 69.9
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 2.6e-18 95.9 83 69.9
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 2.6e-18 95.9 83 69.9
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 3.4e-18 95.5 147 42.9
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 3.4e-18 95.5 143 39.2
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 3.4e-18 95.5 83 67.5
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 4.5e-18 95.1 80 55.0
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 4.5e-18 95.1 86 50.0
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 5.8e-18 94.7 145 39.3
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 5.8e-18 94.7 144 48.6
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 7.6e-18 94.4 142 38.7
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 7.6e-18 94.4 132 43.9
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.0e-17 94.0 129 39.5
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 1.0e-17 94.0 92 46.7
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 1.0e-17 94.0 145 40.7
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.0e-17 94.0 96 49.0
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 1.0e-17 94.0 87 49.4
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 1.3e-17 93.6 92 47.8
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.7e-17 93.2 90 54.4
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 1.7e-17 93.2 90 54.4
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 1.7e-17 93.2 147 49.0
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 2.2e-17 92.8 86 47.7
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.9e-17 92.4 85 50.6
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.9e-17 92.4 85 50.6
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 2.9e-17 92.4 85 65.9
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 3.8e-17 92.0 97 43.3
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 3.8e-17 92.0 87 67.8
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 3.8e-17 92.0 74 55.4
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 4.9e-17 91.7 135 44.4
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 6.5e-17 91.3 145 42.8
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 6.5e-17 91.3 88 59.1
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 6.5e-17 91.3 109 44.0
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 1.1e-16 90.5 80 51.2
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 1.1e-16 90.5 147 49.0
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.1e-16 90.5 143 39.9
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.1e-16 90.5 143 39.9
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.4e-16 90.1 85 65.9
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.9e-16 89.7 86 50.0
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 1.9e-16 89.7 88 47.7
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.9e-16 89.7 90 48.9
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 3.2e-16 89.0 88 63.6
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.2e-16 89.0 88 63.6
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 3.2e-16 89.0 147 46.9
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 4.2e-16 88.6 146 48.6
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 4.2e-16 88.6 93 47.3
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 4.2e-16 88.6 133 39.8
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 5.5e-16 88.2 88 62.5
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 7.1e-16 87.8 85 67.1
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 1.2e-15 87.0 101 40.6
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 1.6e-15 86.7 146 48.6
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 1.6e-15 86.7 88 47.7
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.6e-15 86.7 140 42.1
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 2.7e-15 85.9 147 37.4
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 2.7e-15 85.9 92 45.7
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 2.7e-15 85.9 145 46.2
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 2.7e-15 85.9 145 37.2
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 3.5e-15 85.5 121 49.6
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 4.6e-15 85.1 82 50.0
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 6.0e-15 84.7 91 63.7
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 6.0e-15 84.7 91 63.7
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 1.0e-14 84.0 103 57.3
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 1.0e-14 84.0 77 61.0
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 1.0e-14 84.0 94 57.4
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 1.8e-14 83.2 91 62.6
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.8e-14 83.2 93 53.8
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 5.1e-14 81.6 117 38.5
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 5.1e-14 81.6 122 41.8
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 5.1e-14 81.6 96 43.8
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 5.1e-14 81.6 103 53.4
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 5.1e-14 81.6 90 44.4
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 8.7e-14 80.9 92 57.6
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 8.7e-14 80.9 85 44.7
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 1.1e-13 80.5 87 43.7
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 1.1e-13 80.5 96 45.8
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 1.1e-13 80.5 69 52.2
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 1.1e-13 80.5 89 43.8
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 1.5e-13 80.1 140 41.4
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.9e-13 79.7 77 50.6
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 1.9e-13 79.7 134 46.3
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 1.9e-13 79.7 145 46.9
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 2.5e-13 79.3 107 39.3
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 3.3e-13 79.0 93 39.8
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 4.3e-13 78.6 85 56.5
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 4.3e-13 78.6 90 53.3
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 4.3e-13 78.6 76 65.8
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 4.3e-13 78.6 87 44.8
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 4.3e-13 78.6 86 60.5
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 4.3e-13 78.6 107 40.2
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 5.7e-13 78.2 88 59.1
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 5.7e-13 78.2 88 48.9
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 7.4e-13 77.8 95 42.1
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 7.4e-13 77.8 82 43.9
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.4e-13 77.8 96 41.7
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 9.6e-13 77.4 76 65.8
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 9.6e-13 77.4 53 58.5
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 9.6e-13 77.4 78 52.6
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 1.3e-12 77.0 80 63.8
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 1.3e-12 77.0 89 58.4
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 1.6e-12 76.6 88 40.9
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 2.8e-12 75.9 88 44.3
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 2.8e-12 75.9 96 44.8
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 2.8e-12 75.9 80 56.2
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 2.8e-12 75.9 90 55.6
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 2.8e-12 75.9 132 45.5
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 2.8e-12 75.9 82 53.7
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 2.8e-12 75.9 145 44.8
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 3.7e-12 75.5 68 48.5
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 3.7e-12 75.5 91 44.0
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 6.3e-12 74.7 83 61.4
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 1.1e-11 73.9 87 40.2
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 1.1e-11 73.9 143 35.0
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.4e-11 73.6 59 55.9
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 1.8e-11 73.2 91 53.8
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.8e-11 73.2 80 61.2
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 2.4e-11 72.8 142 35.2
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 3.1e-11 72.4 86 55.8
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.1e-11 72.4 86 55.8
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.1e-11 72.4 86 55.8
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 3.1e-11 72.4 92 58.7
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 6.9e-11 71.2 79 57.0
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 9.0e-11 70.9 87 39.1
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 1.2e-10 70.5 141 44.7
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 1.5e-10 70.1 62 48.4
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 2.6e-10 69.3 76 43.4
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 4.5e-10 68.6 59 50.8
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 1.0e-09 67.4 78 44.9
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 1.3e-09 67.0 122 36.9
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 1.3e-09 67.0 83 54.2
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 2.9e-09 65.9 86 37.2
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 2.9e-09 65.9 72 44.4
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 2.9e-09 65.9 72 44.4
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 5.0e-09 65.1 60 51.7
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 3.2e-08 62.4 101 36.6
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 9.3e-08 60.8 69 40.6
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.6e-07 58.5 98 34.7
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 7.9e-07 57.8 53 47.2
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.3e-06 56.2 59 47.5


User provided reference genes

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