Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 3.2e-168 595.1 329 100.0
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 3.2e-168 595.1 329 100.0
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 1.6e-162 576.2 329 97.6
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 1.4e-158 563.1 339 93.5
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 1.4e-158 563.1 339 93.5
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 4.7e-143 511.5 340 85.9
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 1.4e-126 456.8 345 78.8
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 2.1e-111 406.4 339 71.4
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 1.6e-106 390.2 338 69.2
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 5.1e-105 385.2 329 70.2
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 1.5e-104 383.6 340 69.1
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 1.9e-96 356.7 340 67.4
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 4.8e-95 352.1 284 74.3
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 4.8e-87 325.5 309 65.0
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 3.0e-73 279.6 349 53.9
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 1.1e-70 271.2 372 51.6
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 1.4e-49 201.1 368 45.4
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 3.0e-49 199.9 366 43.7
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 6.7e-49 198.7 365 45.2
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 9.7e-48 194.9 371 41.8
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 9.7e-48 194.9 370 42.4
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.7e-47 194.1 368 43.2
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 2.8e-47 193.4 367 43.3
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 6.3e-47 192.2 366 44.0
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 6.3e-47 192.2 367 43.1
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 1.1e-46 191.4 364 44.0
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 1.8e-46 190.7 366 45.4
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 3.1e-46 189.9 382 42.4
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 7.0e-46 188.7 362 43.1
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.2e-45 188.0 358 42.2
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 1.6e-45 187.6 372 41.4
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 2.0e-45 187.2 384 40.6
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 4.5e-45 186.0 352 43.8
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 7.7e-45 185.3 372 41.4
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 1.0e-44 184.9 373 40.2
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 1.7e-44 184.1 379 43.0
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 1.7e-44 184.1 383 43.1
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 2.2e-44 183.7 370 41.9
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 8.5e-44 181.8 368 41.8
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 1.5e-43 181.0 374 42.5
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 2.5e-43 180.3 364 45.3
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 5.5e-43 179.1 382 43.5
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 1.8e-41 174.1 349 43.3
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 2.3e-41 173.7 360 40.8
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 6.8e-41 172.2 370 41.4
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 1.2e-40 171.4 376 41.5
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 1.2e-40 171.4 357 41.2
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 1.5e-40 171.0 374 41.4
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 2.6e-40 170.2 379 40.9
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 7.5e-40 168.7 361 40.7
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 7.5e-40 168.7 358 42.7
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 4.8e-39 166.0 354 40.1
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 6.3e-39 165.6 364 39.3
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 1.1e-38 164.9 373 40.5
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 1.4e-38 164.5 386 40.7
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 1.8e-38 164.1 436 37.6
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 1.8e-38 164.1 372 43.3
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 3.1e-38 163.3 350 40.6
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.2e-37 161.4 358 41.6
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 1.6e-37 161.0 385 39.7
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 2.7e-37 160.2 389 39.3
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 5.9e-37 159.1 355 41.7
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 5.9e-37 159.1 364 38.5
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 5.9e-37 159.1 363 40.5
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 5.9e-37 159.1 366 38.8
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 5.9e-37 159.1 356 40.7
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 1.7e-36 157.5 377 39.3
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 3.8e-36 156.4 345 42.0
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 8.6e-36 155.2 377 41.1
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 8.6e-36 155.2 303 42.9
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 1.1e-35 154.8 360 42.2
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 1.9e-35 154.1 466 35.0
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 3.3e-35 153.3 355 41.1
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 4.2e-35 152.9 349 40.7
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.0e-33 148.3 402 37.3
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 4.4e-32 142.9 351 37.3
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 9.8e-32 141.7 351 37.6
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 3.7e-31 139.8 345 37.4
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 1.1e-30 138.3 412 33.5
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 4.1e-30 136.3 300 38.7
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 7.0e-30 135.6 300 39.0
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 9.2e-30 135.2 402 35.8
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 2.0e-29 134.0 414 32.6
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 6.6e-28 129.0 380 33.7
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 1.1e-27 128.3 311 36.7
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 3.3e-27 126.7 347 37.5
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 5.6e-27 125.9 285 38.6
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 7.3e-27 125.6 420 32.6
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 6.1e-26 122.5 291 39.2
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 3.7e-23 113.2 355 33.8
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 2.3e-20 104.0 341 33.7
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 8.6e-20 102.1 353 30.9
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 4.3e-19 99.8 342 31.9
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 9.5e-19 98.6 394 30.5
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 2.8e-18 97.1 355 32.4
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.1e-17 95.1 358 31.8
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 1.1e-17 95.1 345 32.2
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.5e-16 91.3 348 33.6
BcaNung06177 Brassica carinata HOM05D006327 ORTHO05D007952 7.5e-16 89.0 65 76.9
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 2.2e-15 87.4 310 33.2
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 2.4e-14 84.0 156 46.8
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 4.6e-13 79.7 297 28.6
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 1.1e-11 75.1 357 28.9
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 7.3e-11 72.4 48 66.7
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 7.3e-11 72.4 48 66.7
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 9.5e-11 72.0 52 57.7
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 9.5e-11 72.0 48 66.7
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 9.5e-11 72.0 48 66.7
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.1e-10 70.9 48 64.6
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 2.8e-10 70.5 47 66.0
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 6.2e-10 69.3 331 27.2
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 8.1e-10 68.9 279 33.0
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.4e-09 68.2 48 62.5
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.8e-09 67.8 48 62.5
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.8e-09 67.8 48 62.5
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.8e-09 65.9 48 62.5
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 8.9e-09 65.5 206 33.5
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 3.4e-08 63.5 137 35.8
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 7.5e-08 62.4 204 27.5
Migut.B01064 Erythranthe guttata HOM05D006327 ORTHO05D007952 5.4e-06 56.2 38 68.4


User provided reference genes

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