Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01741 Brassica carinata HOM05D005637 ORTHO05D006983 2.0e-32 141.7 67 100.0
C03p72380 Brassica napus HOM05D005637 ORTHO05D006983 6.4e-31 136.7 66 97.0
BolC3t19533H Brassica oleracea HOM05D005637 ORTHO05D006983 6.4e-31 136.7 66 97.0
AL1G39180 Arabidopsis lyrata HOM05D005637 ORTHO05D006983 2.9e-23 111.3 53 92.5
AT1G26550 Arabidopsis thaliana HOM05D005637 ORTHO05D006983 2.9e-23 111.3 53 92.5
BcaB03g11995 Brassica carinata HOM05D005637 ORTHO05D006983 2.9e-23 111.3 53 92.5
A08p27370 Brassica napus HOM05D005637 ORTHO05D006983 2.9e-23 111.3 53 92.5
A09p39930 Brassica napus HOM05D005637 ORTHO05D006983 2.9e-23 111.3 53 92.5
C05p24490 Brassica napus HOM05D005637 ORTHO05D006983 2.9e-23 111.3 53 92.5
BolC5t31183H Brassica oleracea HOM05D005637 ORTHO05D006983 2.9e-23 111.3 53 92.5
BraA08t34678Z Brassica rapa HOM05D005637 ORTHO05D006983 2.9e-23 111.3 53 92.5
BraA09t39492Z Brassica rapa HOM05D005637 ORTHO05D006983 2.9e-23 111.3 53 92.5
Thhalv10009046m.g Eutrema salsugineum HOM05D005637 ORTHO05D006983 2.9e-23 111.3 53 92.5
Sp1g22230 Schrenkiella parvula HOM05D005637 ORTHO05D006983 2.9e-23 111.3 53 92.5
CARHR025420 Cardamine hirsuta HOM05D005637 ORTHO05D006983 3.8e-23 110.9 53 90.6
Ciclev10022740m.g Citrus clementina HOM05D005637 ORTHO05D006983 3.8e-23 110.9 53 92.5
CSS0030079 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 4.9e-23 110.5 53 90.6
TWI75G0754 Tripterygium wilfordii HOM05D005637 ORTHO05D006983 4.9e-23 110.5 53 90.6
Haze_07302 Corylus avellana HOM05D005637 ORTHO05D006983 6.4e-23 110.2 53 88.7
Carub.0001s2449 Capsella rubella HOM05D005637 ORTHO05D006983 8.4e-23 109.8 53 90.6
DCAR_026064 Daucus carota HOM05D005637 ORTHO05D006983 8.4e-23 109.8 53 90.6
Migut.I00202 Erythranthe guttata HOM05D005637 ORTHO05D006983 8.4e-23 109.8 53 90.6
Hma1.2p1_0060F.1_g033550 Hydrangea macrophylla HOM05D005637 ORTHO05D006983 8.4e-23 109.8 53 90.6
Rhsim08G0152700 Rhododendron simsii HOM05D005637 ORTHO05D006983 8.4e-23 109.8 53 90.6
SGA_v2.0_scaffold313G48341 Striga asiatica HOM05D005637 ORTHO05D006983 8.4e-23 109.8 53 90.6
unitig_748.g7812 Utricularia gibba HOM05D005637 ORTHO05D006983 8.4e-23 109.8 53 90.6
vmacro17563 Vaccinium macrocarpon HOM05D005637 ORTHO05D006983 8.4e-23 109.8 53 90.6
Atru.chr9.197 Acer truncatum HOM05D005637 ORTHO05D006983 2.4e-22 108.2 53 88.7
Aqoxy3G03463 Aquilegia oxysepala HOM05D005637 ORTHO05D006983 2.4e-22 108.2 59 79.7
CDE02G3019 Ceratophyllum demersum HOM05D005637 ORTHO05D006983 3.2e-22 107.8 53 88.7
Glyma.04G166700 Glycine max HOM05D005637 ORTHO05D006983 3.2e-22 107.8 53 88.7
CANSAT80G1152 Cannabis sativa HOM05D005637 ORTHO05D006983 4.2e-22 107.5 53 86.8
Ca_14657_v3 Cicer arietinum L. HOM05D005637 ORTHO05D006983 4.2e-22 107.5 53 86.8
Lalb_Chr08g0235561 Lupinus albus HOM05D005637 ORTHO05D006983 4.2e-22 107.5 53 86.8
Medtr3g037570 Medicago truncatula HOM05D005637 ORTHO05D006983 4.2e-22 107.5 53 86.8
Phvul.009G185800 Phaseolus vulgaris HOM05D005637 ORTHO05D006983 4.2e-22 107.5 53 86.8
QL10p017509 Quercus lobata HOM05D005637 ORTHO05D006983 4.2e-22 107.5 53 86.8
TPR.G11903 Trifolium pratense HOM05D005637 ORTHO05D006983 4.2e-22 107.5 53 86.8
Dinv10648 Davidia involucrata HOM05D005637 ORTHO05D006983 5.4e-22 107.1 53 86.8
Nitab4.5_0001195g0050 Nicotiana tabacum HOM05D005637 ORTHO05D006983 5.4e-22 107.1 53 86.8
Nitab4.5_0001997g0100 Nicotiana tabacum HOM05D005637 ORTHO05D006983 5.4e-22 107.1 53 86.8
CAN.G648.12 Capsicum annuum HOM05D005637 ORTHO05D006983 7.1e-22 106.7 53 86.8
Cpa.g.sc57.35 Carica papaya HOM05D005637 ORTHO05D006983 7.1e-22 106.7 53 84.9
MBI02_g20483_MAGBIO Magnolia biondii HOM05D005637 ORTHO05D006983 7.1e-22 106.7 51 88.2
Sc04g0002850 Simmondsia chinensis HOM05D005637 ORTHO05D006983 7.1e-22 106.7 52 86.5
ATR0564G491 Amborella trichopoda HOM05D005637 ORTHO05D006983 1.2e-21 105.9 53 84.9
Glyma.06G195800 Glycine max HOM05D005637 ORTHO05D006983 1.2e-21 105.9 53 84.9
Nn2g15887 Nelumbo nucifera HOM05D005637 ORTHO05D006983 1.2e-21 105.9 53 84.9
Os09g0411700 Oryza sativa ssp. japonica HOM05D005637 ORTHO05D006983 1.2e-21 105.9 53 86.8
Psat5g200400 Pisum sativum HOM05D005637 ORTHO05D006983 1.2e-21 105.9 53 84.9
VMungo1309G0753 Vigna mungo HOM05D005637 ORTHO05D006983 1.2e-21 105.9 53 86.8
arahy.Tifrunner.gnm1.ann1.KT0WW2 Arachis hypogaea HOM05D005637 ORTHO05D006983 1.6e-21 105.5 53 84.9
MD00G1081600 Malus domestica HOM05D005637 ORTHO05D006983 1.6e-21 105.5 53 84.9
Mapoly0082s0039 Marchantia polymorpha HOM05D005637 ORTHO05D006983 1.6e-21 105.5 53 88.7
Solyc12g036200.2 Solanum lycopersicum HOM05D005637 ORTHO05D006983 1.6e-21 105.5 53 84.9
Sopen12g016310 Solanum pennellii HOM05D005637 ORTHO05D006983 1.6e-21 105.5 53 84.9
PGSC0003DMG400021937 Solanum tuberosum HOM05D005637 ORTHO05D006983 1.6e-21 105.5 53 84.9
AagrBONN_evm.TU.Sc2ySwM_228.632 Anthoceros agrestis HOM05D005637 ORTHO05D006983 2.7e-21 104.8 53 83.0
AagrBONN_evm.TU.Sc2ySwM_362.586 Anthoceros agrestis HOM05D005637 ORTHO05D006983 2.7e-21 104.8 53 83.0
Sabra08G0067300 Salix brachista HOM05D005637 ORTHO05D006983 2.7e-21 104.8 53 83.0
CSS0007590 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 3.5e-21 104.4 51 88.2
ECA247G3019 Erigeron canadensis HOM05D005637 ORTHO05D006983 3.5e-21 104.4 53 86.8
LjContig00102g0010410 Lotus japonicus HOM05D005637 ORTHO05D006983 3.5e-21 104.4 53 86.8
LjContig00103g0026967 Lotus japonicus HOM05D005637 ORTHO05D006983 3.5e-21 104.4 53 86.8
Pp3c26_7640 Physcomitrium patens HOM05D005637 ORTHO05D006983 3.5e-21 104.4 53 84.9
Prupe.1G278400 Prunus persica HOM05D005637 ORTHO05D006983 3.5e-21 104.4 53 83.0
Sed0018902 Sechium edule HOM05D005637 ORTHO05D006983 3.5e-21 104.4 52 86.5
arahy.Tifrunner.gnm1.ann1.M53U4W Arachis hypogaea HOM05D005637 ORTHO05D006983 4.6e-21 104.0 53 83.0
CiPaw.11G046600 Carya illinoinensis HOM05D005637 ORTHO05D006983 4.6e-21 104.0 53 83.0
Oeu052447.1 Olea europaea HOM05D005637 ORTHO05D006983 4.6e-21 104.0 53 84.9
THA.LOC104822041 Tarenaya hassleriana HOM05D005637 ORTHO05D006983 4.6e-21 104.0 53 84.9
Actinidia04874 Actinidia chinensis HOM05D005637 ORTHO05D006983 6.0e-21 103.6 53 84.9
CSS0002747 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 6.0e-21 103.6 51 88.2
Cc00_g08390 Coffea canephora HOM05D005637 ORTHO05D006983 6.0e-21 103.6 53 83.0
SMO367G1093 Selaginella moellendorffii HOM05D005637 ORTHO05D006983 6.0e-21 103.6 53 83.0
PGR119G0762 Punica granatum HOM05D005637 ORTHO05D006983 7.9e-21 103.2 53 83.0
GSVIVG01007979001 Vitis vinifera HOM05D005637 ORTHO05D006983 7.9e-21 103.2 53 83.0
ClCG09G021890 Citrullus lanatus HOM05D005637 ORTHO05D006983 1.0e-20 102.8 53 84.9
COL.COLO4_36923 Corchorus olitorius HOM05D005637 ORTHO05D006983 1.0e-20 102.8 53 84.9
CsaV3_5G025290 Cucumis sativus L. HOM05D005637 ORTHO05D006983 1.0e-20 102.8 53 84.9
Duzib068G0698 Durio zibethinus HOM05D005637 ORTHO05D006983 1.0e-20 102.8 53 84.9
Duzib205G1800 Durio zibethinus HOM05D005637 ORTHO05D006983 1.0e-20 102.8 53 84.9
HanXRQChr04g0107301 Helianthus annuus HOM05D005637 ORTHO05D006983 1.0e-20 102.8 53 84.9
Peaxi162Scf00106g00427 Petunia axillaris HOM05D005637 ORTHO05D006983 1.0e-20 102.8 53 81.1
TAR496G0002 Trochodendron aralioides HOM05D005637 ORTHO05D006983 1.0e-20 102.8 53 84.9
TAR629G0341 Trochodendron aralioides HOM05D005637 ORTHO05D006983 1.0e-20 102.8 53 84.9
FAN12G2219 Fragaria x ananassa HOM05D005637 ORTHO05D006983 1.3e-20 102.4 65 69.2
Eucgr.G02481 Eucalyptus grandis HOM05D005637 ORTHO05D006983 1.8e-20 102.1 53 81.1
FvH4_4g30970 Fragaria vesca HOM05D005637 ORTHO05D006983 1.8e-20 102.1 53 81.1
FAN07G0507 Fragaria x ananassa HOM05D005637 ORTHO05D006983 1.8e-20 102.1 53 81.1
FAN17G1506 Fragaria x ananassa HOM05D005637 ORTHO05D006983 1.8e-20 102.1 53 81.1
FAN22G0476 Fragaria x ananassa HOM05D005637 ORTHO05D006983 1.8e-20 102.1 53 81.1
Gohir.A07G064200 Gossypium hirsutum HOM05D005637 ORTHO05D006983 1.8e-20 102.1 53 81.1
Gohir.D07G069000 Gossypium hirsutum HOM05D005637 ORTHO05D006983 1.8e-20 102.1 53 81.1
Gorai.001G072500 Gossypium raimondii HOM05D005637 ORTHO05D006983 1.8e-20 102.1 53 81.1
PSO832G2445 Papaver somniferum HOM05D005637 ORTHO05D006983 1.8e-20 102.1 53 83.0
Zm00001eb312430 Zea mays HOM05D005637 ORTHO05D006983 2.3e-20 101.7 53 81.1
MELO3C002951.2 Cucumis melo HOM05D005637 ORTHO05D006983 3.0e-20 101.3 53 83.0
Potri.008G089900 Populus trichocarpa HOM05D005637 ORTHO05D006983 3.0e-20 101.3 53 81.1
Hund02632 Selenicereus undatus HOM05D005637 ORTHO05D006983 3.0e-20 101.3 53 83.0
Thecc.03G093000 Theobroma cacao HOM05D005637 ORTHO05D006983 3.0e-20 101.3 53 83.0
Manes.14G080801 Manihot esculenta HOM05D005637 ORTHO05D006983 3.9e-20 100.9 53 81.1
RcHm_v2.0_Chr4g0439331 Rosa chinensis HOM05D005637 ORTHO05D006983 5.1e-20 100.5 53 79.2
HPP92_011002 Vanilla planifolia HOM05D005637 ORTHO05D006983 5.1e-20 100.5 50 86.0
CBR_g30502 Chara braunii HOM05D005637 ORTHO05D006983 6.7e-20 100.1 52 84.6
Sabra10G0125900 Salix brachista HOM05D005637 ORTHO05D006983 6.7e-20 100.1 48 89.6
EL10Ac5g11048 Beta vulgaris HOM05D005637 ORTHO05D006983 1.1e-19 99.4 52 80.8
CSS0040245 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.9e-19 98.6 51 86.3
Ah.02g113670 Amaranthus hybridus HOM05D005637 ORTHO05D006983 4.3e-19 97.4 49 83.7
CSS0006784 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 4.3e-19 97.4 50 86.0
MBI04_g11434_MAGBIO Magnolia biondii HOM05D005637 ORTHO05D006983 5.6e-19 97.1 53 75.5
CSS0019959 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.6e-18 95.5 53 79.2
BolC7t42459H Brassica oleracea HOM05D005637 ORTHO05D006983 2.1e-18 95.1 67 71.6
Ah.02g113660 Amaranthus hybridus HOM05D005637 ORTHO05D006983 3.6e-18 94.4 49 83.7
C07p19400 Brassica napus HOM05D005637 ORTHO05D006983 3.6e-18 94.4 67 71.6
CANSAT80G0999 Cannabis sativa HOM05D005637 ORTHO05D006983 6.2e-18 93.6 45 88.9
AUR62008440 Chenopodium quinoa HOM05D005637 ORTHO05D006983 5.3e-17 90.5 52 71.2
AUR62021650 Chenopodium quinoa HOM05D005637 ORTHO05D006983 7.1e-14 80.1 43 74.4
BcaC03g15376 Brassica carinata HOM05D005637 ORTHO05D006983 4.6e-13 77.4 35 97.1
BcaC06g35140 Brassica carinata HOM05D005637 ORTHO05D006983 1.8e-12 75.5 39 87.2
Lsat_1_v5_gn_1_14240 Lactuca sativa HOM05D005637 ORTHO05D006983 1.5e-11 72.4 33 90.9
TAR365G0307 Trochodendron aralioides HOM05D005637 ORTHO05D006983 1.9e-11 72.0 34 88.2
LjContig00261g0007071 Lotus japonicus HOM05D005637 ORTHO05D006983 3.3e-11 71.2 36 83.3
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 2.6e-08 61.6 56 46.4
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 1.7e-07 58.9 50 52.0
SalBow5G0960 Salvia bowleyana HOM05D005637 ORTHO05D006983 3.8e-07 57.8 43 65.1
Haze_26720 Corylus avellana HOM05D000811 ORTHO05D004743 6.5e-07 57.0 48 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1572 Anthoceros agrestis HOM05D000811 ORTHO05D004743 1.1e-06 56.2 45 53.3
Duzib147G0350 Durio zibethinus HOM05D000811 ORTHO05D004743 2.5e-06 55.1 52 44.2
Pp3c10_25090 Physcomitrium patens HOM05D000811 ORTHO05D004743 3.2e-06 54.7 45 51.1
CDE05G3463 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 4.2e-06 54.3 52 51.9
Pp3c20_23120 Physcomitrium patens HOM05D000811 ORTHO05D004743 5.5e-06 53.9 45 51.1
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 5.5e-06 53.9 47 48.9
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 9.3e-06 53.1 41 53.7


User provided reference genes

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