Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01685 Brassica carinata HOM05D001227 ORTHO05D001082 5.3e-63 244.2 124 100.0
AL6G23610 Arabidopsis lyrata HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
AT5G13020 Arabidopsis thaliana HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
BcaB01g05382 Brassica carinata HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
BcaNung01179 Brassica carinata HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
A03p05760 Brassica napus HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
A10p25170 Brassica napus HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
C03p06710 Brassica napus HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
C09p64080 Brassica napus HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
BolC3t13177H Brassica oleracea HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
BolC9t59245H Brassica oleracea HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
BraA03t09915Z Brassica rapa HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
BraA10t44579Z Brassica rapa HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
Carub.0006s1119 Capsella rubella HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
CARHR200440 Cardamine hirsuta HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
Thhalv10013727m.g Eutrema salsugineum HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
Sp6g30950 Schrenkiella parvula HOM05D001227 ORTHO05D001082 3.1e-07 58.9 29 96.6
HanXRQChr13g0404231 Helianthus annuus HOM05D001227 ORTHO05D001082 4.1e-07 58.5 29 93.1
Lj1A438G30 Lonicera japonica HOM05D001227 ORTHO05D001082 4.1e-07 58.5 29 93.1
QL01p009115 Quercus lobata HOM05D001227 ORTHO05D001082 4.1e-07 58.5 29 93.1
COL.COLO4_10391 Corchorus olitorius HOM05D001227 ORTHO05D001082 7.0e-07 57.8 29 89.7
Duzib168G1128 Durio zibethinus HOM05D001227 ORTHO05D001082 7.0e-07 57.8 29 89.7
Gohir.A13G214900 Gossypium hirsutum HOM05D001227 ORTHO05D001082 7.0e-07 57.8 29 89.7
Gohir.D13G218600 Gossypium hirsutum HOM05D001227 ORTHO05D001082 7.0e-07 57.8 29 89.7
Gorai.013G249400 Gossypium raimondii HOM05D001227 ORTHO05D001082 7.0e-07 57.8 29 89.7
Nn7g36024 Nelumbo nucifera HOM05D001227 ORTHO05D001082 7.0e-07 57.8 29 89.7
PSO339G0172 Papaver somniferum HOM05D001227 ORTHO05D001082 7.0e-07 57.8 29 89.7
PSO384G2814 Papaver somniferum HOM05D001227 ORTHO05D001082 7.0e-07 57.8 29 89.7
Thecc.09G219200 Theobroma cacao HOM05D001227 ORTHO05D001082 7.0e-07 57.8 29 89.7
Lsat_1_v5_gn_6_49820 Lactuca sativa HOM05D001227 ORTHO05D001082 9.2e-07 57.4 29 89.7
Hund07553 Selenicereus undatus HOM05D001227 ORTHO05D001082 1.2e-06 57.0 29 93.1
THA.LOC104799086 Tarenaya hassleriana HOM05D001227 ORTHO05D001082 1.2e-06 57.0 29 93.1
THA.LOC104811122 Tarenaya hassleriana HOM05D001227 ORTHO05D001082 1.2e-06 57.0 29 93.1
CANSAT54G0326 Cannabis sativa HOM05D001227 ORTHO05D001082 1.6e-06 56.6 29 89.7
Duzib150G0579 Durio zibethinus HOM05D001227 ORTHO05D001082 1.6e-06 56.6 29 86.2
Hund21660 Selenicereus undatus HOM05D001227 ORTHO05D001082 1.6e-06 56.6 29 89.7
Gohir.A05G066764 Gossypium hirsutum HOM05D001227 ORTHO05D001082 2.0e-06 56.2 29 89.7
Gohir.D05G069600 Gossypium hirsutum HOM05D001227 ORTHO05D001082 2.0e-06 56.2 29 89.7
Gorai.009G070600 Gossypium raimondii HOM05D001227 ORTHO05D001082 2.0e-06 56.2 29 89.7
Actinidia06315 Actinidia chinensis HOM05D001227 ORTHO05D001082 2.7e-06 55.8 29 89.7
Actinidia39372 Actinidia chinensis HOM05D001227 ORTHO05D001082 2.7e-06 55.8 29 89.7
Ah.06g193320 Amaranthus hybridus HOM05D001227 ORTHO05D001082 2.7e-06 55.8 29 86.2
Dinv29041 Davidia involucrata HOM05D001227 ORTHO05D001082 2.7e-06 55.8 29 89.7
Gohir.D08G023200 Gossypium hirsutum HOM05D001227 ORTHO05D001082 2.7e-06 55.8 29 86.2
Gorai.004G018500 Gossypium raimondii HOM05D001227 ORTHO05D001082 2.7e-06 55.8 29 86.2
HanXRQChr17g0560601 Helianthus annuus HOM05D001227 ORTHO05D001082 3.5e-06 55.5 29 86.2
HanXRQChr17g0560611 Helianthus annuus HOM05D001227 ORTHO05D001082 3.5e-06 55.5 29 86.2
MBI01_g33893_MAGBIO Magnolia biondii HOM05D001227 ORTHO05D001082 3.5e-06 55.5 29 86.2
MBI04_g46410_MAGBIO Magnolia biondii HOM05D001227 ORTHO05D001082 3.5e-06 55.5 29 86.2
Nn2g15649 Nelumbo nucifera HOM05D001227 ORTHO05D001082 3.5e-06 55.5 29 86.2
Atru.chr11.2691 Acer truncatum HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Cpa.g.sc189.25 Carica papaya HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Cfa010716 Carpinus fangiana HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
CiPaw.13G001100 Carya illinoinensis HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Ca_11954_v3 Cicer arietinum L. HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Ciclev10031573m.g Citrus clementina HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Haze_03263 Corylus avellana HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
ECA233G1561 Erigeron canadensis HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Glyma.09G000500 Glycine max HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Glyma.12G240400 Glycine max HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Lj3g0001890 Lotus japonicus HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Lj6g0009139 Lotus japonicus HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Lalb_Chr03g0033891 Lupinus albus HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Lalb_Chr19g0131981 Lupinus albus HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Phvul.011G214500 Phaseolus vulgaris HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Psat0s3568g0080 Pisum sativum HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Psat7g232560 Pisum sativum HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Potri.001G229000 Populus trichocarpa HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Potri.009G022900 Populus trichocarpa HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
QL04p000099 Quercus lobata HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
QL04p003119 Quercus lobata HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Sabra09G0014400 Salix brachista HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
Sabra16G0136600 Salix brachista HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
TPR.G5631 Trifolium pratense HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
TWI09G0581 Tripterygium wilfordii HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
TWI73G0540 Tripterygium wilfordii HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
TAR633G0495 Trochodendron aralioides HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
VMungo1127G1626 Vigna mungo HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
GSVIVG01001373001 Vitis vinifera HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
GSVIVG01033513001 Vitis vinifera HOM05D001227 ORTHO05D001082 4.5e-06 55.1 29 86.2
arahy.Tifrunner.gnm1.ann1.UUWD5T Arachis hypogaea HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
arahy.Tifrunner.gnm1.ann1.VMQ9W0 Arachis hypogaea HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
CSS0016005 Camellia sinensis var. sinensis HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Dinv15835 Davidia involucrata HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Dinv43487 Davidia involucrata HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Glyma.20G246900 Glycine max HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Lju124A28G37 Lonicera japonica HOM05D001227 ORTHO05D001082 5.9e-06 54.7 32 71.9
Lj3g0015046 Lotus japonicus HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Manes.06G169500 Manihot esculenta HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Manes.14G015400 Manihot esculenta HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Manes.16G063500 Manihot esculenta HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Potri.001G013800 Populus trichocarpa HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Potri.003G212300 Populus trichocarpa HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Potri.T070080 Populus trichocarpa HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Rhsim07G0050700 Rhododendron simsii HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Sabra01G0010000 Salix brachista HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
THA.LOC104809928 Tarenaya hassleriana HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 82.8
TWI32G0680 Tripterygium wilfordii HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
TAR369G0562 Trochodendron aralioides HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
vmacro13620 Vaccinium macrocarpon HOM05D001227 ORTHO05D001082 5.9e-06 54.7 29 86.2
Atru.chr3.2432 Acer truncatum HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 89.7
Atru.chr3.2435 Acer truncatum HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 89.7
EL10Ac4g10323 Beta vulgaris HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 82.8
CSS0007047 Camellia sinensis var. sinensis HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 82.8
Cpa.g.sc117.2 Carica papaya HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 89.7
CiPaw.13G168400 Carya illinoinensis HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 86.2
CDE06G2572 Ceratophyllum demersum HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 82.8
CDE07G1878 Ceratophyllum demersum HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 82.8
DCAR_002028 Daucus carota HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 86.2
Medtr4g022860 Medicago truncatula HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 86.2
PGR102G1817 Punica granatum HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 86.2
PGR119G0991 Punica granatum HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 82.8
Sc16g0011920 Simmondsia chinensis HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 82.8
TWI60G0071 Tripterygium wilfordii HOM05D001227 ORTHO05D001082 7.7e-06 54.3 29 86.2


User provided reference genes

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