Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01606 Brassica carinata HOM05D000555 ORTHO05D018464 2.8e-33 144.8 80 100.0
C03p74130 Brassica napus HOM05D000555 ORTHO05D018464 1.1e-32 142.9 79 98.7
BolC3t19676H Brassica oleracea HOM05D000555 ORTHO05D018464 1.4e-32 142.5 78 100.0
BcaB05g25062 Brassica carinata HOM05D000555 ORTHO05D001906 3.4e-31 137.9 79 96.2
A02p21430 Brassica napus HOM05D000555 ORTHO05D001906 2.2e-30 135.2 79 93.7
BraA02t07153Z Brassica rapa HOM05D000555 ORTHO05D001906 5.5e-29 130.6 79 92.4
Sp5g32750 Schrenkiella parvula HOM05D000555 ORTHO05D001906 1.2e-28 129.4 79 89.9
BolC2t09500H Brassica oleracea HOM05D000555 ORTHO05D001906 3.0e-27 124.8 79 88.6
Thhalv10018009m.g Eutrema salsugineum HOM05D000555 ORTHO05D001906 3.0e-27 124.8 79 86.1
C02p34810 Brassica napus HOM05D000555 ORTHO05D001906 1.5e-26 122.5 79 86.1
BcaC03g15748 Brassica carinata HOM05D000555 ORTHO05D001906 2.5e-26 121.7 79 86.1
C03p73990 Brassica napus HOM05D000555 ORTHO05D018464 1.8e-24 115.5 64 100.0
CARHR071110 Cardamine hirsuta HOM05D000555 ORTHO05D001906 5.3e-24 114.0 79 79.7
Aa31LG4G7710 Aethionema arabicum HOM05D000555 ORTHO05D001906 2.6e-23 111.7 79 77.2
C03p73930 Brassica napus HOM05D000313 ORTHO05D018464 7.7e-23 110.2 61 98.4
Carub.0002s2449 Capsella rubella HOM05D000555 ORTHO05D001906 1.4e-21 105.9 79 77.2
AL142U10010 Arabidopsis lyrata HOM05D000555 ORTHO05D018464 2.1e-20 102.1 79 74.7
AL2G37810 Arabidopsis lyrata HOM05D000555 ORTHO05D001906 2.1e-20 102.1 79 74.7
AT1G77600 Arabidopsis thaliana HOM05D000555 ORTHO05D001906 1.5e-18 95.9 79 70.9
Potri.002G084300 Populus trichocarpa HOM05D000555 ORTHO05D001906 2.5e-13 78.6 78 57.7
Sabra02G0065900 Salix brachista HOM05D000555 ORTHO05D001906 9.4e-13 76.6 78 55.1
Gohir.A01G188800 Gossypium hirsutum HOM05D000555 ORTHO05D001906 6.1e-12 73.9 75 53.3
Duzib116G0370 Durio zibethinus HOM05D000555 ORTHO05D001906 1.4e-11 72.8 75 54.7
Gohir.D01G180700 Gossypium hirsutum HOM05D000555 ORTHO05D001906 3.0e-11 71.6 75 52.0
Gorai.002G221900 Gossypium raimondii HOM05D000555 ORTHO05D001906 3.0e-11 71.6 75 52.0
Manes.18G076700 Manihot esculenta HOM05D000555 ORTHO05D001906 3.0e-11 71.6 78 51.3
Atru.chr13.1458 Acer truncatum HOM05D000555 ORTHO05D001906 4.0e-11 71.2 77 50.6
Atru.chr13.1481 Acer truncatum HOM05D000555 ORTHO05D001906 4.0e-11 71.2 77 50.6
Eucgr.F03787 Eucalyptus grandis HOM05D000555 ORTHO05D001906 3.3e-10 68.2 79 43.0
Ciclev10003517m.g Citrus clementina HOM05D000555 ORTHO05D001906 4.4e-10 67.8 78 53.8
Cpa.g.sc36.61 Carica papaya HOM05D000555 ORTHO05D001906 7.5e-10 67.0 78 48.7
Thecc.08G124600 Theobroma cacao HOM05D000555 ORTHO05D001906 4.1e-08 61.2 75 45.3
TWI56G0829 Tripterygium wilfordii HOM05D000555 ORTHO05D001906 1.2e-07 59.7 78 48.7
QL09p034959 Quercus lobata HOM05D000555 ORTHO05D001906 1.6e-07 59.3 79 43.0
RcHm_v2.0_Chr6g0295681 Rosa chinensis HOM05D000555 ORTHO05D001906 2.0e-07 58.9 79 43.0
TPR.G8250 Trifolium pratense HOM05D000555 ORTHO05D001906 3.5e-07 58.2 76 44.7
CANSAT11G2461 Cannabis sativa HOM05D000555 ORTHO05D001906 7.7e-07 57.0 79 39.2
Cfa016012 Carpinus fangiana HOM05D000555 ORTHO05D001906 7.7e-07 57.0 72 44.4
FvH4_2g26820 Fragaria vesca HOM05D000555 ORTHO05D001906 7.7e-07 57.0 79 41.8
FAN20G1220 Fragaria x ananassa HOM05D000555 ORTHO05D001906 7.7e-07 57.0 79 41.8
FAN27G2775 Fragaria x ananassa HOM05D000555 ORTHO05D001906 7.7e-07 57.0 79 41.8
FAN15G2287 Fragaria x ananassa HOM05D000555 ORTHO05D001906 1.0e-06 56.6 79 41.8
Ca_14564_v3 Cicer arietinum L. HOM05D000555 ORTHO05D001906 1.3e-06 56.2 78 42.3
VMungo0647G1974 Vigna mungo HOM05D000555 ORTHO05D001906 2.2e-06 55.5 78 43.6


User provided reference genes

Program Settings