Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 4.3e-103 377.9 175 100.0
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 1.3e-102 376.3 175 99.4
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 1.3e-102 376.3 175 99.4
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 1.3e-102 376.3 175 99.4
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 1.3e-102 376.3 175 99.4
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 1.3e-102 376.3 175 99.4
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 1.6e-102 375.9 175 98.9
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 2.8e-102 375.2 175 98.9
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 3.7e-102 374.8 175 98.9
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 3.7e-102 374.8 175 98.3
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 6.2e-102 374.0 175 98.9
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 8.1e-102 373.6 175 98.3
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 1.1e-101 373.2 175 98.9
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 1.1e-101 373.2 175 97.7
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 2.4e-101 372.1 175 98.3
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 1.5e-100 369.4 175 97.1
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 1.5e-100 369.4 175 97.1
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 1.7e-99 365.9 175 96.0
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 1.7e-99 365.9 175 96.0
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 4.9e-99 364.4 175 94.9
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 4.9e-99 364.4 175 95.4
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 6.5e-99 364.0 175 94.3
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 1.1e-98 363.2 175 93.7
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 3.2e-98 361.7 175 94.3
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 3.2e-98 361.7 175 94.3
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 3.2e-98 361.7 175 94.3
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 93.7
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 7.1e-98 360.5 175 93.1
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 7.1e-98 360.5 175 93.1
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 7.1e-98 360.5 175 93.1
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 92.6
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 93.1
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 2.1e-97 359.0 175 93.1
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 2.1e-97 359.0 175 92.0
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 2.1e-97 359.0 174 92.0
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 93.7
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 90.9
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 93.1
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 91.4
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 6.0e-97 357.5 175 92.6
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 92.0
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 93.1
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 91.4
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 91.4
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 92.6
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 92.6
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 91.4
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 91.4
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 92.0
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 91.4
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 90.9
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 1.8e-96 355.9 174 92.0
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 90.3
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 2.3e-96 355.5 174 92.0
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 2.3e-96 355.5 175 92.0
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 2.3e-96 355.5 175 92.0
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 3.0e-96 355.1 175 90.3
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 3.0e-96 355.1 175 92.0
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 90.3
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 6.7e-96 354.0 175 90.9
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 8.7e-96 353.6 175 90.9
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 1.1e-95 353.2 174 92.5
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 1.1e-95 353.2 172 90.7
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 91.4
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 91.4
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 91.4
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 90.3
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.9e-95 352.4 175 89.7
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 90.3
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 89.7
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 90.9
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 90.9
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 90.9
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 3.3e-95 351.7 177 91.5
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 4.3e-95 351.3 175 90.3
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 5.7e-95 350.9 174 90.2
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 5.7e-95 350.9 174 90.2
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 90.9
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 90.9
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 89.7
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 90.3
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 89.1
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 7.4e-95 350.5 173 89.6
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 9.6e-95 350.1 174 87.9
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 1.3e-94 349.7 175 89.1
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 1.3e-94 349.7 175 89.7
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 1.6e-94 349.4 175 89.1
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 1.6e-94 349.4 175 90.9
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 2.1e-94 349.0 175 89.7
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 2.8e-94 348.6 175 89.1
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 2.8e-94 348.6 173 91.3
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 3.7e-94 348.2 172 89.5
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 3.7e-94 348.2 175 89.7
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 6.2e-94 347.4 175 89.1
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 1.4e-93 346.3 174 89.1
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 2.4e-93 345.5 175 89.1
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 3.1e-93 345.1 175 88.6
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 9.0e-93 343.6 175 89.7
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 1.2e-92 343.2 174 90.2
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 1.2e-92 343.2 173 91.9
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 1.2e-92 343.2 172 89.5
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 1.2e-92 343.2 173 89.0
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 1.2e-92 343.2 169 89.3
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 2.0e-92 342.4 175 88.0
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 5.8e-92 340.9 175 87.4
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 5.0e-91 337.8 175 84.6
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.9e-90 335.9 175 87.4
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 2.7e-89 332.0 175 85.1
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 4.3e-87 324.7 175 81.7
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 2.2e-86 322.4 244 65.6
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 2.4e-85 318.9 173 82.7
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 3.1e-85 318.5 174 79.3
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 6.9e-85 317.4 174 78.2
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 1.2e-81 306.6 173 78.0
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 3.6e-81 305.1 167 79.6
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 3.0e-80 302.0 150 88.7
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 2.8e-78 295.4 181 78.5
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 3.7e-78 295.0 175 73.7
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 1.6e-73 279.6 165 71.5
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 3.3e-71 271.9 167 77.8
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 4.4e-71 271.6 131 91.6
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 2.8e-70 268.9 132 90.2
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.2e-68 263.5 131 87.0
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 4.5e-68 261.5 164 68.3
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 4.4e-63 245.0 125 88.8
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 2.5e-58 229.2 124 82.3
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 5.5e-58 228.0 112 90.2
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 1.2e-57 226.9 119 86.6
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 6.1e-57 224.6 125 82.4
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 5.7e-55 218.0 171 57.3
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 4.1e-53 211.8 114 84.2
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 1.5e-50 203.4 112 76.8
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 1.2e-49 200.3 104 86.5
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 2.7e-44 182.6 142 64.1
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 7.2e-42 174.5 95 83.2
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 2.4e-37 159.5 88 81.8
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 1.6e-33 146.7 177 48.0
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 1.8e-32 143.3 109 63.3
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 3.7e-30 135.6 114 60.5
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 9.2e-29 131.0 66 89.4
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 3.4e-23 112.5 92 56.5


User provided reference genes

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