Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.9e-122 442.2 273 100.0
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.5e-110 403.3 363 74.1
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-106 389.4 364 68.1
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-103 380.6 366 70.5
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.8e-103 379.8 370 66.2
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 8.2e-101 370.9 367 65.7
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 2.2e-98 362.8 364 65.1
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-95 353.2 321 76.9
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-94 350.1 364 63.5
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 2.0e-94 349.7 387 55.0
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-93 347.1 366 68.0
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 3.7e-93 345.5 363 59.5
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 6.1e-80 301.6 424 46.2
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.8e-79 300.1 421 46.6
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 2.8e-77 292.7 424 45.8
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 1.6e-75 287.0 424 47.4
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 2.0e-75 286.6 431 44.3
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 1.1e-73 280.8 429 43.8
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 3.1e-71 272.7 439 41.9
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 1.6e-67 260.4 132 97.0
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 7.8e-67 258.1 437 41.9
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 1.7e-66 256.9 334 50.3
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 3.9e-66 255.8 132 96.2
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 5.0e-66 255.4 132 96.2
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 5.0e-66 255.4 132 96.2
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-65 254.2 132 96.2
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-65 254.2 132 95.5
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.9e-65 253.4 430 42.1
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 8.9e-63 244.6 132 92.4
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.7e-61 240.4 131 92.4
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.9e-61 238.8 405 41.0
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 6.4e-61 238.4 126 93.7
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 6.4e-61 238.4 408 40.9
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 8.3e-61 238.0 408 40.9
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-60 237.3 123 95.1
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.4e-60 237.3 123 95.1
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.9e-60 236.9 127 93.7
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.9e-60 236.9 127 93.7
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.9e-60 236.9 127 93.7
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.9e-60 236.9 421 39.7
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 2.4e-60 236.5 407 41.3
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 9.2e-60 234.6 395 41.0
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.2e-59 234.2 416 39.4
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 3.5e-59 232.6 412 39.8
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 4.6e-59 232.3 419 39.1
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 2.3e-58 229.9 442 37.8
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.3e-58 229.9 423 39.5
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 3.9e-58 229.2 416 39.2
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 3.9e-58 229.2 391 41.4
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 5.1e-58 228.8 440 38.9
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.1e-57 227.6 452 37.6
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.1e-57 227.6 425 38.4
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.5e-57 227.3 424 38.9
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 1.9e-57 226.9 421 39.2
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.5e-57 226.5 423 38.1
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 2.5e-57 226.5 431 39.0
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 2.5e-57 226.5 431 39.0
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 3.3e-57 226.1 130 85.4
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 3.3e-57 226.1 427 37.9
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 4.3e-57 225.7 130 84.6
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 5.6e-57 225.3 130 86.2
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 5.6e-57 225.3 452 36.9
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 5.6e-57 225.3 431 38.7
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 7.3e-57 224.9 417 41.0
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 9.5e-57 224.6 130 83.1
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 9.5e-57 224.6 423 37.6
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.6e-56 223.8 132 82.6
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 1.6e-56 223.8 126 86.5
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.1e-56 223.4 130 83.1
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 2.1e-56 223.4 130 84.6
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 3.6e-56 222.6 383 38.9
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 3.6e-56 222.6 390 39.2
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 4.7e-56 222.2 130 83.8
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.7e-56 222.2 130 83.8
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 6.2e-56 221.9 130 85.4
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 6.2e-56 221.9 415 38.6
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 6.2e-56 221.9 130 83.8
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 8.1e-56 221.5 453 36.2
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 8.1e-56 221.5 122 87.7
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 8.1e-56 221.5 130 82.3
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.1e-55 221.1 130 83.8
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.1e-55 221.1 130 82.3
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.1e-55 221.1 130 82.3
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.1e-55 221.1 130 83.1
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 1.8e-55 220.3 416 38.9
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 2.3e-55 219.9 130 81.5
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.1e-55 219.5 131 80.9
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 3.1e-55 219.5 131 80.9
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 3.1e-55 219.5 129 82.9
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 4.0e-55 219.2 122 86.1
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 4.0e-55 219.2 424 37.5
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 5.2e-55 218.8 130 84.6
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 5.2e-55 218.8 130 84.6
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 6.8e-55 218.4 455 36.5
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 8.9e-55 218.0 410 38.0
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 8.9e-55 218.0 387 42.6
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.2e-54 217.6 416 38.7
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.2e-54 217.6 130 80.8
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.2e-54 217.6 130 81.5
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.2e-54 217.6 130 81.5
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.5e-54 217.2 130 81.5
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.5e-54 217.2 129 81.4
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.5e-54 217.2 123 86.2
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 2.0e-54 216.9 453 37.3
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 2.0e-54 216.9 130 80.8
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 2.0e-54 216.9 130 80.8
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.0e-54 216.9 130 82.3
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 2.0e-54 216.9 127 83.5
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.6e-54 216.5 130 81.5
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 3.4e-54 216.1 122 85.2
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 4.4e-54 215.7 129 81.4
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 4.4e-54 215.7 458 36.7
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 7.5e-54 214.9 123 84.6
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 7.5e-54 214.9 123 84.6
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 7.5e-54 214.9 416 38.2
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 7.5e-54 214.9 410 39.0
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 9.9e-54 214.5 123 84.6
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 9.9e-54 214.5 128 82.8
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.3e-53 214.2 328 49.1
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 1.7e-53 213.8 123 84.6
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 3.7e-53 212.6 421 38.2
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 4.9e-53 212.2 439 39.6
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 6.4e-53 211.8 121 83.5
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.1e-52 211.1 419 36.8
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.9e-52 210.3 395 39.0
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 4.1e-52 209.1 427 37.9
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.1e-52 209.1 416 38.2
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 5.4e-52 208.8 421 37.1
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 9.2e-52 208.0 416 38.2
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.2e-52 208.0 419 37.9
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.6e-51 207.2 413 36.8
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.0e-50 204.5 432 36.8
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 3.9e-50 202.6 456 34.6
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 8.6e-50 201.4 448 36.6
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.1e-49 201.1 114 86.0
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 2.5e-49 199.9 456 35.3
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 5.6e-49 198.7 131 75.6
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.6e-48 197.2 130 76.2
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 4.7e-48 195.7 409 38.1
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 4.0e-47 192.6 105 91.4
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-46 190.7 131 77.9
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 9.9e-46 188.0 427 34.9
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 3.3e-41 172.9 100 85.0
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 3.1e-39 166.4 86 96.5
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 5.3e-39 165.6 106 77.4
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.2e-38 164.5 132 64.4
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 2.2e-37 160.2 86 93.0
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 2.9e-37 159.8 80 97.5
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 1.9e-36 157.1 90 91.1
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 1.3e-34 151.0 107 68.2
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 3.0e-34 149.8 87 86.2
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 8.7e-34 148.3 87 85.1
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 3.3e-33 146.4 132 59.8
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 9.6e-33 144.8 100 66.0
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.3e-32 144.4 75 92.0
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.3e-32 144.4 77 89.6
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 4.8e-32 142.5 93 81.7
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.1e-31 141.4 87 80.5
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.0e-30 137.1 93 73.1
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 7.6e-30 135.2 122 59.0
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 6.4e-29 132.1 386 31.3
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 2.1e-27 127.1 70 91.4
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 3.5e-27 126.3 112 51.8
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-26 124.4 70 90.0
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 9.6e-25 118.2 70 81.4
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 1.6e-24 117.5 69 87.0
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-22 110.9 86 73.3
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 2.7e-19 100.1 65 75.4
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 7.4e-17 92.0 56 80.4
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 1.6e-16 90.9 56 82.1
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 4.1e-15 86.3 64 70.3
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 1.5e-14 84.3 70 62.9
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 5.5e-12 75.9 55 69.1
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 9.3e-12 75.1 353 38.5
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 7.9e-11 72.0 72 56.9
BNapus_Darmor_BZH_scaffold_38p02420 Brassica napus HOM05D003848 ORTHO05D004616 2.5e-09 67.0 34 91.2
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 2.5e-09 67.0 102 50.0
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.5e-09 67.0 92 53.3


User provided reference genes

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