Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-69 266.5 134 100.0
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-69 266.5 134 100.0
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 4.1e-69 264.6 134 99.3
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 4.1e-69 264.6 134 99.3
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 4.1e-69 264.6 134 99.3
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 4.1e-69 264.6 134 99.3
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 4.1e-69 264.6 134 99.3
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 4.1e-69 264.6 134 99.3
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-68 263.1 134 98.5
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-68 262.7 134 98.5
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-68 262.7 134 98.5
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 2.6e-68 261.9 134 97.8
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 3.5e-68 261.5 134 97.8
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 5.9e-68 260.8 134 97.0
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 5.9e-68 260.8 134 97.0
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-67 260.0 134 97.8
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-67 259.6 134 97.8
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 3.8e-67 258.1 131 99.2
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.5e-66 256.1 134 96.3
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 2.5e-66 255.4 131 98.5
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 4.2e-66 254.6 134 94.8
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 1.2e-65 253.1 134 94.8
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 2.1e-65 252.3 134 94.0
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-65 251.9 134 94.8
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 3.6e-65 251.5 132 96.2
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 4.0e-64 248.1 134 91.8
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 2.6e-63 245.4 125 97.6
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.3e-62 243.0 131 94.7
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.7e-62 242.7 132 91.7
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 4.8e-62 241.1 126 96.0
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 4.8e-62 241.1 132 90.9
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 8.2e-62 240.4 123 97.6
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-61 239.6 127 96.1
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-61 239.6 127 96.1
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.4e-61 239.6 127 96.1
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 4.5e-60 234.6 132 88.6
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 4.5e-60 234.6 132 87.1
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 7.7e-60 233.8 132 87.9
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 7.7e-60 233.8 132 87.1
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 7.7e-60 233.8 132 86.4
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 1.0e-59 233.4 132 86.4
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 1.0e-59 233.4 132 87.1
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.3e-59 233.0 134 87.3
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.3e-59 233.0 132 86.4
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 1.3e-59 233.0 132 86.4
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 2.2e-59 232.3 132 85.6
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 2.2e-59 232.3 132 85.6
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 3.8e-59 231.5 134 85.1
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 5.0e-59 231.1 131 88.5
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 5.0e-59 231.1 132 85.6
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 5.0e-59 231.1 132 85.6
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 5.0e-59 231.1 132 87.1
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 5.0e-59 231.1 134 85.1
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 5.0e-59 231.1 132 85.6
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 6.5e-59 230.7 133 87.2
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 6.5e-59 230.7 134 85.1
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 6.5e-59 230.7 134 85.1
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 6.5e-59 230.7 134 85.1
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 8.5e-59 230.3 130 86.9
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 8.5e-59 230.3 132 85.6
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 8.5e-59 230.3 132 85.6
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 8.5e-59 230.3 132 85.6
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.1e-58 229.9 135 85.9
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.1e-58 229.9 132 86.4
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.5e-58 229.6 132 87.9
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.5e-58 229.6 133 86.5
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 1.5e-58 229.6 133 86.5
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.5e-58 229.6 132 84.8
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 1.5e-58 229.6 132 86.4
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.5e-58 229.6 132 86.4
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.9e-58 229.2 132 84.8
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.9e-58 229.2 132 84.8
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.9e-58 229.2 133 85.0
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.9e-58 229.2 124 90.3
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.9e-58 229.2 132 84.8
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 2.5e-58 228.8 132 84.8
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 2.5e-58 228.8 132 84.8
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 2.5e-58 228.8 128 88.3
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.5e-58 228.8 132 85.6
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 3.2e-58 228.4 125 88.8
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.2e-58 228.0 133 85.7
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 4.2e-58 228.0 133 85.0
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 4.2e-58 228.0 132 84.8
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 4.2e-58 228.0 132 84.1
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 5.5e-58 227.6 132 85.6
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 5.5e-58 227.6 131 86.3
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 7.2e-58 227.3 130 86.9
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 7.2e-58 227.3 132 85.6
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 7.2e-58 227.3 132 84.1
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 9.4e-58 226.9 133 83.5
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.4e-58 226.9 133 83.5
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.4e-58 226.9 133 83.5
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.4e-58 226.9 133 83.5
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 9.4e-58 226.9 133 83.5
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.2e-57 226.5 131 86.3
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.2e-57 226.5 134 83.6
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 1.2e-57 226.5 123 89.4
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.6e-57 226.1 133 83.5
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.6e-57 226.1 133 83.5
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.6e-57 226.1 132 83.3
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.6e-57 226.1 132 83.3
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.6e-57 226.1 124 88.7
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 2.1e-57 225.7 123 89.4
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 2.7e-57 225.3 132 83.3
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 3.6e-57 224.9 132 84.1
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 3.6e-57 224.9 123 88.6
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 3.6e-57 224.9 132 83.3
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 3.6e-57 224.9 131 84.7
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 4.7e-57 224.6 132 83.3
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 4.7e-57 224.6 132 83.3
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 4.7e-57 224.6 129 86.0
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 6.1e-57 224.2 132 84.1
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 6.1e-57 224.2 131 87.0
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 6.1e-57 224.2 131 87.0
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 6.1e-57 224.2 123 88.6
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 8.0e-57 223.8 134 82.8
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.4e-56 223.0 125 87.2
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.4e-56 223.0 125 87.2
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.4e-56 223.0 131 86.3
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.4e-56 223.0 131 86.3
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.4e-56 223.0 131 86.3
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.4e-56 223.0 131 86.3
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.8e-56 222.6 131 83.2
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 1.8e-56 222.6 125 87.2
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.8e-56 222.6 125 88.0
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.3e-56 222.2 132 84.1
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 2.3e-56 222.2 130 85.4
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 4.0e-56 221.5 124 87.1
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 4.0e-56 221.5 123 87.8
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 5.2e-56 221.1 131 83.2
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 5.2e-56 221.1 131 85.5
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 8.8e-56 220.3 125 86.4
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.2e-55 219.9 123 86.2
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.5e-55 219.5 126 86.5
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 2.4e-53 212.2 125 82.4
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.1e-53 211.8 116 89.7
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 5.4e-53 211.1 115 90.4
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 7.7e-52 207.2 133 78.2
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.9e-50 202.6 131 78.6
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 2.7e-49 198.7 133 80.5
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 6.8e-48 194.1 105 93.3
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.3e-46 189.9 133 75.9
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 7.0e-45 184.1 102 89.2
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-40 169.1 83 100.0
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 3.0e-40 168.7 107 79.4
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 5.2e-40 167.9 86 98.8
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.5e-39 166.4 133 65.4
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 3.7e-38 161.8 86 95.3
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 9.2e-37 157.1 107 72.0
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 7.8e-36 154.1 84 88.1
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.3e-35 153.3 89 85.4
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 2.9e-35 152.1 77 94.8
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 2.9e-35 152.1 134 61.9
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 5.0e-35 151.4 87 88.5
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 8.6e-35 150.6 79 91.1
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 1.5e-34 149.8 87 87.4
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 2.1e-33 146.0 100 68.0
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.4e-32 143.3 124 62.1
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.6e-31 139.0 93 75.3
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 9.2e-29 130.6 103 58.3
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 3.5e-28 128.6 70 94.3
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-27 125.9 70 92.9
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 1.2e-25 120.2 70 84.3
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 2.1e-25 119.4 69 89.9
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 3.5e-20 102.1 65 78.5
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 3.3e-18 95.5 90 62.2
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.6e-17 92.0 56 82.1
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 3.4e-15 85.5 56 78.6
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.7e-14 83.2 39 97.4
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.7e-14 83.2 106 46.2
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 1.2e-12 77.0 53 73.6
BNapus_Darmor_BZH_scaffold_38p02420 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-08 63.5 34 88.2


User provided reference genes

Program Settings