Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 3.3e-56 221.5 111 100.0
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 2.1e-26 122.5 58 100.0
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 4.6e-26 121.3 82 76.8
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-25 119.8 86 75.6
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 8.7e-25 117.1 86 73.3
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-24 116.7 86 73.3
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 2.5e-24 115.5 58 93.1
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 4.3e-24 114.8 86 73.3
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 7.4e-24 114.0 86 70.9
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 7.4e-24 114.0 82 72.0
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 5.3e-22 107.8 58 87.9
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-21 105.9 97 62.9
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.0e-20 103.6 58 86.2
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 3.8e-20 101.7 58 81.0
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 8.4e-20 100.5 58 79.3
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 2.5e-19 99.0 83 62.7
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 3.2e-19 98.6 58 79.3
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 1.6e-18 96.3 83 60.2
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 2.7e-18 95.5 82 61.0
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 3.5e-18 95.1 94 56.4
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 3.0e-17 92.0 102 58.8
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 1.9e-16 89.4 58 79.3
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.3e-15 86.7 58 69.0
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 2.2e-15 85.9 58 74.1
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 2.2e-15 85.9 58 74.1
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.1e-14 83.6 58 70.7
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.1e-14 83.6 64 67.2
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.8e-14 82.8 57 64.9
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 2.4e-14 82.4 58 63.8
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 2.4e-14 82.4 58 63.8
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.1e-14 82.0 58 63.8
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 4.1e-14 81.6 58 67.2
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 5.3e-14 81.3 58 65.5
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 5.3e-14 81.3 58 70.7
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 5.3e-14 81.3 82 57.3
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 9.0e-14 80.5 59 72.9
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 1.2e-13 80.1 59 69.5
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 1.2e-13 80.1 59 69.5
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 1.2e-13 80.1 59 69.5
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 1.5e-13 79.7 105 45.7
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 5.9e-13 77.8 59 69.5
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 7.6e-13 77.4 59 67.8
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.0e-12 77.0 59 67.8
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.3e-12 76.6 82 58.5
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.3e-12 76.6 82 58.5
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 3.8e-12 75.1 51 68.6
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.8e-12 75.1 63 61.9
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 5.0e-12 74.7 61 62.3
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 5.0e-12 74.7 83 54.2
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 5.0e-12 74.7 59 66.1
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 8.5e-12 73.9 61 70.5
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 8.5e-12 73.9 59 66.1
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 8.5e-12 73.9 59 66.1
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 1.4e-11 73.2 83 59.0
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.4e-11 73.2 57 61.4
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 2.5e-11 72.4 55 63.6
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.5e-11 72.4 82 53.7
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 4.2e-11 71.6 60 65.0
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 4.2e-11 71.6 62 59.7
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 4.2e-11 71.6 61 63.9
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 4.2e-11 71.6 55 61.8
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 5.5e-11 71.2 60 66.7
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 5.5e-11 71.2 61 63.9
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 9.4e-11 70.5 80 53.8
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 9.4e-11 70.5 83 54.2
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 1.2e-10 70.1 58 58.6
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.6e-10 69.7 103 43.7
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 1.6e-10 69.7 62 64.5
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.6e-10 69.7 59 64.4
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.6e-10 69.7 99 40.4
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 2.1e-10 69.3 58 58.6
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 2.7e-10 68.9 43 69.8
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 2.7e-10 68.9 43 69.8
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-10 68.9 43 69.8
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-10 68.9 43 69.8
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 2.7e-10 68.9 43 69.8
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 2.7e-10 68.9 43 69.8
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 2.7e-10 68.9 61 62.3
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 3.6e-10 68.6 63 63.5
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 4.6e-10 68.2 58 58.6
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 7.9e-10 67.4 43 67.4
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.0e-09 67.0 110 39.1
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.0e-09 67.0 87 46.0
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 1.8e-09 66.2 87 49.4
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 6.7e-09 64.3 94 44.7
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 8.8e-09 63.9 55 58.2
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 8.8e-09 63.9 84 46.4
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 8.8e-09 63.9 52 65.4
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 8.8e-09 63.9 52 65.4
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 8.8e-09 63.9 51 58.8
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 8.8e-09 63.9 78 47.4
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.5e-08 63.2 65 55.4
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.5e-08 63.2 105 40.0
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.5e-08 63.2 80 47.5
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.9e-08 62.8 52 65.4
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.9e-08 62.8 48 62.5
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 2.5e-08 62.4 51 58.8
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 4.3e-08 61.6 86 43.0
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 7.4e-08 60.8 53 58.5
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 9.7e-08 60.5 88 45.5
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.3e-07 60.1 71 49.3
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.7e-07 59.7 58 56.9
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.7e-07 59.7 51 54.9
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 2.2e-07 59.3 62 53.2
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.7e-07 58.5 59 59.3
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 4.8e-07 58.2 87 42.5
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 6.3e-07 57.8 78 47.4
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 8.2e-07 57.4 95 43.2
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 8.2e-07 57.4 80 45.0
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 8.2e-07 57.4 56 51.8
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.1e-06 57.0 52 55.8
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.1e-06 57.0 59 59.3
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.1e-06 57.0 60 58.3
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 1.8e-06 56.2 60 53.3
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 2.4e-06 55.8 61 54.1
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.1e-06 55.5 89 46.1
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 3.1e-06 55.5 59 55.9
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.1e-06 55.5 59 55.9
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.1e-06 55.1 59 55.9
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 9.1e-06 53.9 46 60.9


User provided reference genes

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