Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 1.9e-48 195.7 108 100.0
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 1.9e-48 195.7 108 100.0
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 2.0e-42 175.6 99 97.0
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 5.8e-42 174.1 99 96.0
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 2.2e-41 172.2 97 96.9
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 1.0e-33 146.7 102 85.3
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 1.0e-33 146.7 102 85.3
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 3.8e-33 144.8 104 82.7
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 1.1e-32 143.3 92 89.1
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 4.6e-31 137.9 94 80.9
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 6.1e-31 137.5 94 80.9
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 7.9e-31 137.1 95 82.1
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 2.8e-28 128.6 94 74.5
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 2.8e-28 128.6 96 80.2
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 8.2e-28 127.1 87 82.8
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 2.4e-27 125.6 95 74.7
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 2.6e-18 95.5 97 61.9
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 3.8e-17 91.7 97 64.9
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 1.9e-16 89.4 96 61.5
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 9.4e-16 87.0 96 59.4
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 3.6e-15 85.1 96 59.4
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 5.2e-14 81.3 99 54.5
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 1.1e-13 80.1 97 57.7
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 5.7e-13 77.8 96 54.2
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 1.3e-12 76.6 99 55.6
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 1.7e-12 76.3 96 54.2
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 3.7e-12 75.1 96 56.2
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 8.2e-12 73.9 95 49.5
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 1.1e-11 73.6 95 49.5
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 1.1e-11 73.6 97 52.6
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 1.1e-11 73.6 95 51.6
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 1.1e-11 73.6 98 56.1
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 1.4e-11 73.2 100 54.0
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 1.8e-11 72.8 94 53.2
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 2.4e-11 72.4 98 52.0
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 2.4e-11 72.4 95 49.5
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 2.4e-11 72.4 103 49.5
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 4.1e-11 71.6 97 50.5
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 5.3e-11 71.2 96 52.1
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 7.0e-11 70.9 98 53.1
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 7.0e-11 70.9 102 49.0
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 1.2e-10 70.1 90 52.2
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 1.2e-10 70.1 98 54.1
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 1.2e-10 70.1 96 50.0
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 1.6e-10 69.7 94 48.9
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 2.0e-10 69.3 94 51.1
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 2.0e-10 69.3 95 49.5
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 2.6e-10 68.9 96 50.0
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 3.5e-10 68.6 94 52.1
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 3.5e-10 68.6 90 51.1
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 5.9e-10 67.8 98 46.9
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 1.3e-09 66.6 71 53.5
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 1.7e-09 66.2 92 48.9
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 1.7e-09 66.2 94 50.0
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 2.2e-09 65.9 98 48.0
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 2.2e-09 65.9 94 47.9
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 2.9e-09 65.5 56 66.1
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.9e-09 65.5 102 45.1
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 3.8e-09 65.1 96 51.0
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 3.8e-09 65.1 75 50.7
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 3.8e-09 65.1 100 52.0
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 3.8e-09 65.1 97 50.5
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 3.8e-09 65.1 97 50.5
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 5.0e-09 64.7 103 46.6
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 6.5e-09 64.3 103 45.6
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 8.5e-09 63.9 65 55.4
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 1.1e-08 63.5 100 50.0
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 1.1e-08 63.5 75 53.3
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 1.5e-08 63.2 87 49.4
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 1.5e-08 63.2 113 43.4
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.9e-08 62.8 97 46.4
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.9e-08 62.8 95 46.3
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 3.2e-08 62.0 95 46.3
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 3.2e-08 62.0 97 43.3
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 3.2e-08 62.0 89 46.1
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 4.2e-08 61.6 96 45.8
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 4.2e-08 61.6 97 49.5
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 4.2e-08 61.6 96 50.0
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 5.5e-08 61.2 43 72.1
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 5.5e-08 61.2 95 45.3
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 7.2e-08 60.8 95 45.3
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 7.2e-08 60.8 99 46.5
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 9.4e-08 60.5 96 45.8
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 1.2e-07 60.1 90 47.8
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 1.2e-07 60.1 106 40.6
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 2.1e-07 59.3 95 41.1
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 2.7e-07 58.9 93 50.5
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 3.6e-07 58.5 95 51.6
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 3.6e-07 58.5 96 49.0
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 6.1e-07 57.8 55 63.6
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 6.1e-07 57.8 71 47.9
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 1.4e-06 56.6 85 47.1
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 1.8e-06 56.2 94 50.0
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 1.8e-06 56.2 100 44.0
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 2.3e-06 55.8 80 46.2
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 4.0e-06 55.1 75 50.7


User provided reference genes

Program Settings