Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01473 Brassica carinata HOM05D001560 ORTHO05D003613 1.0e-30 136.0 63 100.0
C03p92380 Brassica napus HOM05D001560 ORTHO05D003613 1.0e-30 136.0 63 100.0
BolSC28t60329H Brassica oleracea HOM05D001560 ORTHO05D003613 2.1e-15 85.1 40 97.5
BraSC77t46661Z Brassica rapa HOM05D001560 ORTHO05D003613 2.1e-15 85.1 40 97.5
Sp3g25920 Schrenkiella parvula HOM05D001560 ORTHO05D003613 2.1e-15 85.1 40 97.5
ATMG00520 Arabidopsis thaliana HOM05D001560 ORTHO05D003613 2.7e-15 84.7 40 95.0
CARHR282880 Cardamine hirsuta HOM05D001560 ORTHO05D003613 2.7e-15 84.7 40 95.0
BraSC48t46281Z Brassica rapa HOM05D001560 ORTHO05D003613 6.1e-15 83.6 40 95.0
C01p34990 Brassica napus HOM05D001560 ORTHO05D003613 1.3e-14 82.4 41 95.1
CANSAT16G0039 Cannabis sativa HOM05D001560 ORTHO05D003613 6.7e-14 80.1 40 90.0
Ca_14833_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 6.7e-14 80.1 40 90.0
Ca_22165_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 6.7e-14 80.1 40 90.0
TWI75G1342 Tripterygium wilfordii HOM05D001560 ORTHO05D003613 6.7e-14 80.1 40 90.0
CsaV3_UNG210420 Cucumis sativus L. HOM05D001560 ORTHO05D003613 1.1e-13 79.3 40 87.5
PGR028G0023 Punica granatum HOM05D001560 ORTHO05D003613 1.5e-13 79.0 40 87.5
PGR071G0003 Punica granatum HOM05D001560 ORTHO05D003613 1.5e-13 79.0 40 87.5
Cpa.g.sc89.22 Carica papaya HOM05D001560 ORTHO05D003613 1.9e-13 78.6 40 85.0
ClCG10G004690 Citrullus lanatus HOM05D001560 ORTHO05D003613 1.9e-13 78.6 40 87.5
Dinv06700 Davidia involucrata HOM05D001560 ORTHO05D003613 1.9e-13 78.6 40 90.0
LjContig00315g0001212 Lotus japonicus HOM05D001560 ORTHO05D003613 1.9e-13 78.6 40 87.5
Sed0003843 Sechium edule HOM05D001560 ORTHO05D003613 1.9e-13 78.6 40 87.5
Sed0013276 Sechium edule HOM05D001560 ORTHO05D003613 1.9e-13 78.6 40 87.5
Actinidia34853 Actinidia chinensis HOM05D001560 ORTHO05D003613 5.7e-13 77.0 40 87.5
Lj2C1229T3 Lonicera japonica HOM05D001560 ORTHO05D003613 5.7e-13 77.0 40 87.5
CDE02G0303 Ceratophyllum demersum HOM05D001560 ORTHO05D003613 9.7e-13 76.3 40 85.0
ClCG10G004710 Citrullus lanatus HOM05D001560 ORTHO05D003613 9.7e-13 76.3 40 85.0
unitig_87.g27957 Utricularia gibba HOM05D001560 ORTHO05D003613 9.7e-13 76.3 40 85.0
RhsimMtG0005500 Rhododendron simsii HOM05D001560 ORTHO05D003613 1.6e-12 75.5 40 85.0
CAN.G1180.6 Capsicum annuum HOM05D001560 ORTHO05D003613 2.2e-12 75.1 39 87.2
CAN.G745.35 Capsicum annuum HOM05D001560 ORTHO05D003613 2.2e-12 75.1 39 87.2
Peaxi162Scf00622g00016 Petunia axillaris HOM05D001560 ORTHO05D003613 2.2e-12 75.1 39 87.2
Sopen11g018210 Solanum pennellii HOM05D001560 ORTHO05D003613 2.2e-12 75.1 39 87.2
COL.COLO4_04089 Corchorus olitorius HOM05D001560 ORTHO05D003613 2.8e-12 74.7 40 82.5
DCAR_032442 Daucus carota HOM05D001560 ORTHO05D003613 2.8e-12 74.7 40 85.0
TPR.G162 Trifolium pratense HOM05D001560 ORTHO05D003613 2.8e-12 74.7 40 87.5
Sc04g0005570 Simmondsia chinensis HOM05D001560 ORTHO05D003613 6.3e-12 73.6 40 85.0
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 8.2e-12 73.2 63 57.1
SHI45575 Sapria himalayana HOM05D001560 ORTHO05D003613 1.1e-11 72.8 41 78.0
AUR62042345 Chenopodium quinoa HOM05D001560 ORTHO05D003613 1.8e-11 72.0 40 82.5
Ah.10g028460 Amaranthus hybridus HOM05D001560 ORTHO05D003613 2.4e-11 71.6 40 82.5
Nn1g09975 Nelumbo nucifera HOM05D001560 ORTHO05D003613 2.4e-11 71.6 40 82.5
Nn1g10043 Nelumbo nucifera HOM05D001560 ORTHO05D003613 2.4e-11 71.6 40 82.5
Nn4g26006 Nelumbo nucifera HOM05D001560 ORTHO05D003613 2.4e-11 71.6 40 82.5
Nn4g26010 Nelumbo nucifera HOM05D001560 ORTHO05D003613 2.4e-11 71.6 40 82.5
Lalb_Chr00c21g0406061 Lupinus albus HOM05D001560 ORTHO05D003613 3.1e-11 71.2 44 79.5
Lalb_Chr00c39g0409051 Lupinus albus HOM05D001560 ORTHO05D003613 3.1e-11 71.2 44 79.5
Lalb_Chr00c39g0409231 Lupinus albus HOM05D001560 ORTHO05D003613 3.1e-11 71.2 44 79.5
Lalb_Chr00c51g0413141 Lupinus albus HOM05D001560 ORTHO05D003613 3.1e-11 71.2 44 79.5
SHI40317 Sapria himalayana HOM05D001560 ORTHO05D003613 3.1e-11 71.2 41 75.6
Hma1.2p1_0261F.1_g105120 Hydrangea macrophylla HOM05D001560 ORTHO05D003613 4.1e-11 70.9 40 80.0
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 5.3e-11 70.5 41 75.6
SHI43894 Sapria himalayana HOM05D001560 ORTHO05D003613 5.3e-11 70.5 41 75.6
SHI36270 Sapria himalayana HOM05D001560 ORTHO05D003613 9.1e-11 69.7 37 83.8
Hund12886 Selenicereus undatus HOM05D001560 ORTHO05D003613 9.1e-11 69.7 40 82.5
Hund27586 Selenicereus undatus HOM05D001560 ORTHO05D003613 9.1e-11 69.7 40 82.5
Hund27816 Selenicereus undatus HOM05D001560 ORTHO05D003613 9.1e-11 69.7 40 82.5
Hund27900 Selenicereus undatus HOM05D001560 ORTHO05D003613 9.1e-11 69.7 40 82.5
Hund28069 Selenicereus undatus HOM05D001560 ORTHO05D003613 9.1e-11 69.7 40 82.5
Hund28082 Selenicereus undatus HOM05D001560 ORTHO05D003613 9.1e-11 69.7 40 82.5
Hund28866 Selenicereus undatus HOM05D001560 ORTHO05D003613 9.1e-11 69.7 40 82.5
Hund28883 Selenicereus undatus HOM05D001560 ORTHO05D003613 9.1e-11 69.7 40 82.5
Hund29084 Selenicereus undatus HOM05D001560 ORTHO05D003613 9.1e-11 69.7 40 82.5
Hund29205 Selenicereus undatus HOM05D001560 ORTHO05D003613 9.1e-11 69.7 40 82.5
SHI34998 Sapria himalayana HOM05D001560 ORTHO05D003613 1.2e-10 69.3 41 73.2
SHI36584 Sapria himalayana HOM05D001560 ORTHO05D003613 1.2e-10 69.3 41 75.6
CSS0047048 Camellia sinensis var. sinensis HOM05D001560 ORTHO05D003613 1.5e-10 68.9 40 77.5
AUR62038665 Chenopodium quinoa HOM05D001560 ORTHO05D003613 1.5e-10 68.9 40 80.0
HanXRQChr13g0415511 Helianthus annuus HOM05D001560 ORTHO05D003613 2.0e-10 68.6 41 80.5
SHI34996 Sapria himalayana HOM05D001560 ORTHO05D003613 2.0e-10 68.6 41 73.2
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 2.0e-10 68.6 41 70.7
arahy.Tifrunner.gnm1.ann1.7G246T Arachis hypogaea HOM05D001560 ORTHO05D003613 2.6e-10 68.2 40 80.0
arahy.Tifrunner.gnm1.ann1.JTWL6Q Arachis hypogaea HOM05D001560 ORTHO05D003613 2.6e-10 68.2 40 80.0
HanXRQMTg0579631 Helianthus annuus HOM05D001560 ORTHO05D003613 2.6e-10 68.2 40 80.0
SHI37134 Sapria himalayana HOM05D001560 ORTHO05D003613 2.6e-10 68.2 41 70.7
Nitab4.5_0001152g0950 Nicotiana tabacum HOM05D001560 ORTHO05D003613 4.5e-10 67.4 39 79.5
SHI38463 Sapria himalayana HOM05D001560 ORTHO05D003613 5.9e-10 67.0 41 70.7
HanXRQChr10g0297191 Helianthus annuus HOM05D001560 ORTHO05D003613 7.7e-10 66.6 40 77.5
Lsat_1_v5_gn_6_108960 Lactuca sativa HOM05D001560 ORTHO05D003613 7.7e-10 66.6 40 77.5
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 7.7e-10 66.6 41 73.2
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 7.7e-10 66.6 37 81.1
Hund12883 Selenicereus undatus HOM05D001560 ORTHO05D003613 7.7e-10 66.6 38 81.6
HanXRQChr09g0251121 Helianthus annuus HOM05D001560 ORTHO05D003613 1.0e-09 66.2 40 77.5
SHI27345 Sapria himalayana HOM05D001560 ORTHO05D003613 1.0e-09 66.2 37 81.1
SHI35000 Sapria himalayana HOM05D001560 ORTHO05D003613 1.0e-09 66.2 41 73.2
SHI36374 Sapria himalayana HOM05D001560 ORTHO05D003613 2.9e-09 64.7 37 78.4
Potri.007G062302 Populus trichocarpa HOM05D001560 ORTHO05D003613 3.8e-09 64.3 40 80.0
SabraMtG0009600 Salix brachista HOM05D001560 ORTHO05D003613 3.8e-09 64.3 40 80.0
SHI54049 Sapria himalayana HOM05D001560 ORTHO05D003613 3.8e-09 64.3 41 70.7
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 5.0e-09 63.9 40 77.5
Solyc11g030890.3 Solanum lycopersicum HOM05D001560 ORTHO05D003613 1.9e-08 62.0 40 72.5
Gorai.005G104100 Gossypium raimondii HOM05D001560 ORTHO05D003613 7.2e-08 60.1 34 76.5
Lsat_1_v5_gn_3_89520 Lactuca sativa HOM05D001560 ORTHO05D003613 7.2e-08 60.1 40 70.0
PSO675G8388 Papaver somniferum HOM05D001560 ORTHO05D003613 9.4e-08 59.7 40 75.0
arahy.Tifrunner.gnm1.ann1.K9CWE8 Arachis hypogaea HOM05D001560 ORTHO05D003613 2.7e-07 58.2 38 71.1
Lsat_1_v5_gn_5_16600 Lactuca sativa HOM05D001560 ORTHO05D003613 3.6e-07 57.8 44 65.9
Nitab4.5_0000307g0350 Nicotiana tabacum HOM05D001560 ORTHO05D003613 3.6e-07 57.8 31 80.6
Solyc09g056070.1 Solanum lycopersicum HOM05D001560 ORTHO05D003613 6.1e-07 57.0 55 52.7
CSS0014898 Camellia sinensis var. sinensis HOM05D001560 ORTHO05D003613 1.0e-06 56.2 32 78.1
SHI53219 Sapria himalayana HOM05D001560 ORTHO05D003613 1.8e-06 55.5 34 67.6
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 6.7e-06 53.5 32 65.6
SHI46061 Sapria himalayana HOM05D001560 ORTHO05D003613 6.7e-06 53.5 29 82.8


User provided reference genes

Program Settings