Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 5.8e-127 457.6 237 100.0
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 5.8e-127 457.6 237 100.0
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.4e-125 453.0 237 99.2
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.5e-114 416.4 239 93.3
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 3.7e-113 411.8 244 91.4
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 4.2e-101 371.7 244 82.0
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 1.2e-100 370.2 240 82.5
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 2.5e-98 362.5 238 85.3
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.6e-97 359.8 239 81.2
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 6.5e-94 347.8 244 77.0
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 6.5e-94 347.8 237 79.3
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.4e-93 346.7 240 77.1
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.2e-93 345.5 240 78.8
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.9e-85 319.7 230 73.0
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 2.1e-84 316.2 236 71.2
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 7.9e-84 314.3 234 72.6
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 5.1e-83 311.6 233 72.1
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 2.0e-82 309.7 231 71.9
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 3.3e-82 308.9 230 71.7
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 3.3e-82 308.9 230 71.7
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 2.8e-81 305.8 230 71.7
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 6.3e-81 304.7 230 70.4
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 8.2e-81 304.3 228 71.1
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 2.4e-80 302.8 228 71.1
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 2.4e-80 302.8 228 71.1
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 7.0e-80 301.2 241 69.3
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 3.8e-70 268.9 215 64.2
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 1.5e-69 266.9 238 60.9
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 2.7e-68 262.7 225 62.7
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 4.7e-68 261.9 226 60.6
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 3.0e-67 259.2 242 59.9
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 6.8e-67 258.1 241 61.8
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.5e-66 256.9 247 58.3
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.5e-66 256.9 215 60.9
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 2.0e-66 256.5 222 61.7
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 2.0e-66 256.5 227 59.9
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 2.6e-66 256.1 240 61.2
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 2.6e-66 256.1 215 60.9
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 4.4e-66 255.4 215 60.9
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 7.5e-66 254.6 221 62.4
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 2.2e-65 253.1 240 61.2
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 7.0e-64 248.1 233 58.8
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.6e-63 246.9 233 57.5
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.5e-63 245.7 236 55.9
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 1.7e-62 243.4 231 58.9
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 2.2e-62 243.0 231 56.7
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 6.5e-62 241.5 233 56.7
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 6.5e-62 241.5 216 61.1
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.1e-61 240.7 240 57.1
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.5e-61 240.4 204 61.3
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 2.5e-61 239.6 235 57.0
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 2.5e-61 239.6 249 56.2
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 7.2e-61 238.0 233 57.1
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 2.7e-60 236.1 246 55.7
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 2.7e-60 236.1 225 58.7
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 4.7e-60 235.3 217 58.1
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 6.1e-60 235.0 242 56.2
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 6.1e-60 235.0 238 53.8
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 8.0e-60 234.6 229 57.2
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.0e-59 234.2 234 56.8
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.4e-59 233.8 228 55.7
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.4e-59 233.8 194 63.9
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 2.3e-59 233.0 218 57.3
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 3.0e-59 232.6 239 54.0
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 4.0e-59 232.3 230 54.3
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 8.8e-59 231.1 219 58.4
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 3.4e-58 229.2 218 56.4
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 3.4e-58 229.2 250 52.0
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 3.4e-58 229.2 238 53.8
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 4.4e-58 228.8 217 56.7
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 5.7e-58 228.4 254 50.4
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 7.5e-58 228.0 227 57.3
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.3e-57 227.3 158 68.4
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.7e-57 226.9 252 52.0
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.7e-57 226.9 237 52.3
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.2e-57 226.5 232 53.0
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.8e-57 226.1 233 53.6
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 2.8e-57 226.1 225 56.0
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 3.7e-57 225.7 153 68.0
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 4.8e-57 225.3 235 54.9
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 8.3e-57 224.6 252 51.6
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 8.3e-57 224.6 197 61.4
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.8e-56 223.4 199 59.3
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 2.4e-56 223.0 245 52.7
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 5.4e-56 221.9 238 53.4
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 1.6e-55 220.3 222 55.4
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 3.8e-54 215.7 187 57.2
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 5.0e-54 215.3 224 54.0
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 6.6e-54 214.9 233 55.8
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 8.6e-54 214.5 149 68.5
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.5e-53 213.8 240 50.4
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 1.5e-53 213.8 205 58.5
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 1.9e-53 213.4 230 50.0
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.9e-53 213.4 242 51.7
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 9.5e-53 211.1 269 48.0
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.2e-52 210.7 150 68.0
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 3.6e-52 209.1 229 52.4
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 4.7e-52 208.8 267 46.8
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 1.0e-51 207.6 239 51.9
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.4e-51 207.2 146 66.4
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 3.0e-51 206.1 144 67.4
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 1.2e-50 204.1 152 65.1
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 7.5e-50 201.4 241 49.0
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.1e-48 197.6 146 64.4
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 2.0e-47 193.4 133 66.9
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 3.9e-46 189.1 205 52.7
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 5.8e-42 175.3 140 68.6
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.3e-41 174.1 167 52.7
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 2.2e-41 173.3 137 59.9
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 3.2e-40 169.5 131 61.8
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 1.0e-38 164.5 134 58.2
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 1.0e-38 164.5 227 46.3
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 1.1e-37 161.0 136 57.4
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 7.3e-37 158.3 111 66.7
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 6.2e-36 155.2 194 47.4
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 4.0e-35 152.5 131 55.0
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 1.2e-34 151.0 222 43.2
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.7e-33 147.1 161 50.3
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 2.0e-26 123.6 74 75.7
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 7.6e-26 121.7 187 43.3
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 7.6e-26 121.7 86 68.6
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 1.3e-25 120.9 87 66.7
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 2.7e-23 113.2 124 54.0
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 2.4e-19 100.1 138 36.2
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 5.8e-18 95.5 56 71.4
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 3.3e-13 79.7 74 54.1
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.3e-13 78.6 50 72.0
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 3.6e-12 76.3 100 43.0
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 4.4e-10 69.3 97 43.3
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.9e-08 63.9 128 32.0
Aa31sc158G40 Aethionema arabicum HOM05D005904 ORTHO05D007074 5.1e-06 55.8 42 64.3
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 6.6e-06 55.5 128 32.8


User provided reference genes

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