Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 3.1e-53 211.5 103 100.0
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 3.4e-31 138.3 67 100.0
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 3.5e-28 128.3 67 92.5
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 2.3e-27 125.6 67 92.5
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 2.3e-27 125.6 67 92.5
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 2.3e-27 125.6 67 92.5
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 2.3e-27 125.6 67 92.5
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 3.9e-27 124.8 67 92.5
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 1.1e-26 123.2 67 89.6
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 1.1e-26 123.2 67 89.6
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 1.9e-26 122.5 67 88.1
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 7.3e-26 120.6 67 86.6
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 9.5e-26 120.2 67 88.1
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-25 119.4 67 89.6
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-25 119.4 67 89.6
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-25 119.4 67 89.6
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 1.1e-24 116.7 67 86.6
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-24 116.7 69 85.5
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 1.1e-24 116.7 69 85.5
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 1.1e-24 116.7 69 85.5
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 5.2e-24 114.4 70 82.9
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 5.2e-24 114.4 70 82.9
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.2e-23 113.2 68 83.8
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-22 109.0 69 84.1
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-21 106.3 57 89.5
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 4.3e-18 94.7 67 71.6
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 1.1e-16 90.1 75 64.0
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.4e-16 89.7 67 65.7
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 1.4e-16 89.7 69 65.2
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.8e-16 89.4 67 65.7
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 3.1e-16 88.6 67 64.2
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 3.1e-16 88.6 70 62.9
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 5.3e-16 87.8 73 60.3
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 5.3e-16 87.8 72 61.1
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 6.9e-16 87.4 72 58.3
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 9.0e-16 87.0 67 62.7
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 9.0e-16 87.0 75 57.3
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 1.2e-15 86.7 72 61.1
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-15 86.3 43 90.7
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 1.5e-15 86.3 69 63.8
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 1.5e-15 86.3 72 61.1
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 2.0e-15 85.9 67 61.2
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.6e-15 85.5 72 61.1
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.6e-15 85.5 72 61.1
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 2.6e-15 85.5 67 62.7
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 3.4e-15 85.1 67 61.2
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.4e-15 84.7 69 63.8
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 5.8e-15 84.3 73 61.6
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 5.8e-15 84.3 73 58.9
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 7.6e-15 84.0 73 60.3
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 9.9e-15 83.6 69 59.4
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.3e-14 83.2 74 55.4
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 1.3e-14 83.2 72 59.7
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.3e-14 83.2 73 58.9
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 1.3e-14 83.2 68 58.8
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.7e-14 82.8 73 57.5
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 2.9e-14 82.0 73 58.9
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 4.9e-14 81.3 67 62.7
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 4.9e-14 81.3 71 59.2
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 4.9e-14 81.3 71 59.2
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 4.9e-14 81.3 67 62.7
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 4.9e-14 81.3 71 59.2
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 6.4e-14 80.9 76 57.9
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 8.4e-14 80.5 73 54.8
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 8.4e-14 80.5 75 58.7
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 8.4e-14 80.5 67 62.7
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 1.1e-13 80.1 67 61.2
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 1.1e-13 80.1 72 59.7
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 1.9e-13 79.3 73 53.4
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.9e-13 79.3 67 59.7
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.9e-13 79.3 73 56.2
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.9e-13 79.3 73 56.2
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 2.4e-13 79.0 73 56.2
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 2.4e-13 79.0 75 54.7
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 2.4e-13 79.0 69 58.0
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.4e-13 79.0 69 58.0
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.4e-13 79.0 69 58.0
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 2.4e-13 79.0 72 52.8
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 3.2e-13 78.6 74 54.1
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 3.2e-13 78.6 75 54.7
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 3.2e-13 78.6 71 57.7
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 3.2e-13 78.6 78 57.7
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 5.4e-13 77.8 73 53.4
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 5.4e-13 77.8 75 53.3
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 7.1e-13 77.4 75 57.3
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 9.3e-13 77.0 77 57.1
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 1.2e-12 76.6 73 53.4
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 1.2e-12 76.6 67 61.2
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 1.2e-12 76.6 78 53.8
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.2e-12 76.6 73 54.8
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 1.6e-12 76.3 67 58.2
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 1.6e-12 76.3 74 52.7
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 1.6e-12 76.3 78 53.8
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 1.6e-12 76.3 74 54.1
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 2.1e-12 75.9 73 53.4
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 2.1e-12 75.9 74 56.8
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.7e-12 75.5 76 50.0
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.7e-12 75.5 74 52.7
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 2.7e-12 75.5 76 52.6
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 4.6e-12 74.7 75 50.7
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 6.0e-12 74.3 77 53.2
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 7.8e-12 73.9 63 57.1
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.0e-11 73.6 74 51.4
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 1.3e-11 73.2 77 51.9
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 1.7e-11 72.8 74 51.4
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.7e-11 72.8 75 50.7
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 2.3e-11 72.4 73 56.2
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 3.0e-11 72.0 56 60.7
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 3.0e-11 72.0 76 53.9
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 3.9e-11 71.6 74 56.8
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 3.9e-11 71.6 75 50.7
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 5.1e-11 71.2 74 52.7
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 6.6e-11 70.9 74 54.1
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 6.6e-11 70.9 77 50.6
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.1e-10 70.1 82 47.6
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 1.1e-10 70.1 76 53.9
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.9e-10 69.3 73 56.2
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 2.5e-10 68.9 76 51.3
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 2.5e-10 68.9 75 52.0
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 3.3e-10 68.6 75 46.7
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 7.3e-10 67.4 74 50.0
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 7.3e-10 67.4 74 51.4
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 7.3e-10 67.4 41 68.3
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 9.6e-10 67.0 76 50.0
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 1.3e-09 66.6 66 50.0
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 2.8e-09 65.5 39 69.2
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.8e-09 65.5 38 71.1
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 6.2e-09 64.3 64 51.6
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 6.2e-09 64.3 73 49.3
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 8.1e-09 63.9 37 73.0
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 1.4e-08 63.2 74 48.6
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 2.4e-08 62.4 51 60.8
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 3.1e-08 62.0 39 69.2
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 6.9e-08 60.8 61 52.5
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 9.0e-08 60.5 73 45.2
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 2.6e-07 58.9 77 41.6
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.3e-06 56.6 31 71.0
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.7e-06 56.2 31 74.2
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 2.2e-06 55.8 30 73.3
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.2e-06 55.8 75 46.7


User provided reference genes

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