Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01461 Brassica carinata HOM05D000179 ORTHO05D000107 2.8e-51 204.9 99 100.0
BcaC01g01465 Brassica carinata HOM05D000179 ORTHO05D000107 7.7e-49 196.8 94 100.0
A08p00950 Brassica napus HOM05D000179 ORTHO05D000107 2.2e-48 195.3 94 98.9
BolC3t21540H Brassica oleracea HOM05D000179 ORTHO05D000107 2.2e-48 195.3 94 98.9
BraA08t32150Z Brassica rapa HOM05D000179 ORTHO05D000107 2.2e-48 195.3 94 98.9
C03p92260 Brassica napus HOM05D000179 ORTHO05D000107 7.2e-47 190.3 94 97.9
BraA08t32152Z Brassica rapa HOM05D000179 ORTHO05D024114 1.6e-41 172.6 99 86.9
BcaB04g16992 Brassica carinata HOM05D000179 ORTHO05D000107 2.5e-39 165.2 95 86.3
BcaB02g10846 Brassica carinata HOM05D000179 ORTHO05D000107 1.2e-36 156.4 94 80.9
Sp1g40770 Schrenkiella parvula HOM05D000179 ORTHO05D000107 3.7e-35 151.4 90 81.1
AL1G63110 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 1.7e-32 142.5 91 78.0
CARHR044700 Cardamine hirsuta HOM05D000179 ORTHO05D000107 5.2e-29 131.0 100 74.0
BcaC01g01458 Brassica carinata HOM05D000179 ORTHO05D024114 2.6e-28 128.6 73 86.3
C03p92240 Brassica napus HOM05D000179 ORTHO05D024114 2.6e-28 128.6 73 86.3
Thhalv10011450m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 3.9e-24 114.8 95 69.5
AT1G55110 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 7.3e-23 110.5 89 67.4
A08p00990 Brassica napus HOM05D000179 ORTHO05D024114 4.4e-20 101.3 60 85.0
Carub.0001s4361 Capsella rubella HOM05D000179 ORTHO05D000107 8.1e-14 80.5 98 54.1
BraA05t22366Z Brassica rapa HOM05D000179 ORTHO05D000107 9.9e-12 73.6 108 50.0
Carub.0003s1336 Capsella rubella HOM05D000179 ORTHO05D000107 9.9e-12 73.6 102 55.9
A05p35570 Brassica napus HOM05D000179 ORTHO05D000107 5.4e-10 67.8 86 51.2
CARHR088580 Cardamine hirsuta HOM05D000179 ORTHO05D000107 1.2e-09 66.6 88 54.5
AL3G25950 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 2.7e-09 65.5 88 55.7
BraA01t04018Z Brassica rapa HOM05D000179 ORTHO05D000107 2.7e-09 65.5 89 52.8
Aa31LG8G1000 Aethionema arabicum HOM05D000179 ORTHO05D000107 1.0e-08 63.5 92 46.7
AT3G13810 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 1.3e-08 63.2 86 52.3
BcaC05g29154 Brassica carinata HOM05D000179 ORTHO05D000107 2.3e-08 62.4 104 46.2
C05p53960 Brassica napus HOM05D000179 ORTHO05D000107 2.3e-08 62.4 104 46.2
BolC5t34062H Brassica oleracea HOM05D000179 ORTHO05D000107 2.3e-08 62.4 104 46.2
BcaC09g48374 Brassica carinata HOM05D000179 ORTHO05D000107 6.6e-08 60.8 97 47.4
C01p50790 Brassica napus HOM05D000179 ORTHO05D000107 6.6e-08 60.8 89 49.4
BolC1t05027H Brassica oleracea HOM05D000179 ORTHO05D000107 6.6e-08 60.8 89 49.4
Sp3g12040 Schrenkiella parvula HOM05D000179 ORTHO05D000107 1.5e-07 59.7 92 50.0
BcaB04g18800 Brassica carinata HOM05D000179 ORTHO05D000107 7.3e-07 57.4 71 52.1
BcaB06g25432 Brassica carinata HOM05D000179 ORTHO05D000107 7.3e-07 57.4 71 52.1
Thhalv10020544m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 7.3e-07 57.4 88 51.1
THA.LOC104810341 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 1.6e-06 56.2 102 45.1
BcaB04g20977 Brassica carinata HOM05D000179 ORTHO05D000107 2.1e-06 55.8 90 47.8
A01p39790 Brassica napus HOM05D000179 ORTHO05D000107 3.6e-06 55.1 90 47.8


User provided reference genes

Program Settings