Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 3.3e-77 291.6 141 100.0
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 8.4e-49 197.2 133 74.4
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 8.4e-49 197.2 133 74.4
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 8.4e-49 197.2 133 74.4
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 8.4e-49 197.2 133 74.4
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 4.2e-48 194.9 133 72.9
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 1.3e-46 189.9 133 71.4
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-45 186.8 133 71.4
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 2.5e-45 185.7 133 69.9
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 3.3e-45 185.3 133 70.7
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 5.6e-45 184.5 133 69.9
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 4.8e-44 181.4 133 69.2
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 3.1e-43 178.7 135 68.9
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 3.1e-43 178.7 135 68.9
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 3.1e-43 178.7 135 68.9
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 4.0e-43 178.3 136 68.4
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 4.0e-43 178.3 136 68.4
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 5.3e-43 177.9 134 68.7
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 2.6e-42 175.6 133 67.7
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 2.9e-41 172.2 135 68.1
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-40 169.9 148 60.8
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 3.3e-37 158.7 134 64.2
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 4.8e-36 154.8 133 60.2
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 5.3e-35 151.4 135 57.8
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 9.0e-35 150.6 141 56.7
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 5.9e-34 147.9 136 55.1
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 1.0e-33 147.1 139 56.1
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 1.0e-33 147.1 139 54.0
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 1.3e-33 146.7 133 57.1
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 1.3e-33 146.7 135 56.3
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.7e-33 146.4 139 55.4
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 2.2e-33 146.0 139 55.4
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 2.2e-33 146.0 138 54.3
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 2.2e-33 146.0 139 54.7
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 2.2e-33 146.0 138 52.9
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 2.9e-33 145.6 134 55.2
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 2.9e-33 145.6 135 55.6
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 3.8e-33 145.2 133 56.4
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.8e-33 145.2 138 54.3
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.8e-33 145.2 138 54.3
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 5.0e-33 144.8 139 54.7
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 6.5e-33 144.4 138 55.8
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 6.5e-33 144.4 148 52.7
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 1.1e-32 143.7 139 53.2
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 1.4e-32 143.3 133 55.6
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 2.5e-32 142.5 138 55.1
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.5e-32 142.5 138 55.1
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.5e-32 142.5 138 55.1
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.5e-32 142.5 138 55.1
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.5e-32 142.5 138 55.1
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 2.5e-32 142.5 138 55.1
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 3.2e-32 142.1 133 54.9
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 3.2e-32 142.1 139 53.2
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 4.2e-32 141.7 115 58.3
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 5.5e-32 141.4 139 54.7
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 5.5e-32 141.4 138 51.4
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 7.2e-32 141.0 141 51.1
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 9.3e-32 140.6 138 54.3
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.2e-31 140.2 140 50.0
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 1.2e-31 140.2 139 55.4
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.6e-31 139.8 141 53.9
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 1.6e-31 139.8 141 54.6
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 2.1e-31 139.4 141 51.8
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 2.1e-31 139.4 140 50.7
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 2.1e-31 139.4 141 54.6
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 2.1e-31 139.4 140 52.9
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 2.1e-31 139.4 142 50.7
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 2.7e-31 139.0 141 51.8
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 2.7e-31 139.0 148 50.0
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 2.7e-31 139.0 133 53.4
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 3.6e-31 138.7 138 50.7
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 3.6e-31 138.7 116 56.0
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 4.6e-31 138.3 141 55.3
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 4.6e-31 138.3 141 51.1
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 6.1e-31 137.9 141 49.6
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 6.1e-31 137.9 141 50.4
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 6.1e-31 137.9 139 51.8
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 7.9e-31 137.5 138 50.0
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 7.9e-31 137.5 134 51.5
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 1.0e-30 137.1 140 50.7
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 1.0e-30 137.1 133 53.4
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 1.0e-30 137.1 139 51.1
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 1.0e-30 137.1 141 51.8
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 1.3e-30 136.7 133 52.6
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 1.8e-30 136.3 140 50.7
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 1.8e-30 136.3 139 53.2
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 3.0e-30 135.6 142 51.4
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 3.0e-30 135.6 142 51.4
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 3.0e-30 135.6 136 53.7
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 5.1e-30 134.8 137 50.4
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 5.1e-30 134.8 138 49.3
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 6.7e-30 134.4 138 52.9
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 8.7e-30 134.0 137 50.4
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 8.7e-30 134.0 143 51.0
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 1.1e-29 133.7 113 55.8
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.1e-29 133.7 110 57.3
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 1.5e-29 133.3 133 51.1
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 2.5e-29 132.5 138 49.3
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 3.3e-29 132.1 110 56.4
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 4.3e-29 131.7 138 48.6
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 5.7e-29 131.3 138 47.8
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 5.7e-29 131.3 134 49.3
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 7.4e-29 131.0 119 52.1
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 7.4e-29 131.0 109 56.9
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 1.3e-28 130.2 138 48.6
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.3e-28 130.2 140 47.9
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.3e-28 130.2 140 47.9
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 1.6e-28 129.8 109 56.0
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.8e-28 129.0 111 54.1
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 2.8e-28 129.0 134 48.5
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 4.8e-28 128.3 140 48.6
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 8.2e-28 127.5 109 55.0
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.1e-27 127.1 131 48.9
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 1.8e-27 126.3 140 48.6
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 2.4e-27 125.9 114 54.4
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.9e-26 121.3 130 50.8
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 1.0e-25 120.6 111 55.0
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.7e-25 119.8 132 47.7
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 3.8e-25 118.6 105 54.3
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 8.5e-25 117.5 139 43.9
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 1.1e-24 117.1 106 51.9
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.4e-24 116.7 105 54.3
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 1.9e-24 116.3 141 45.4
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 2.5e-24 115.9 113 50.4
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.2e-23 113.6 149 47.7
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 6.1e-23 111.3 106 52.8
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 7.9e-23 110.9 106 50.0
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-22 110.2 58 89.7
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.8e-22 109.8 105 49.5
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.8e-22 109.8 106 49.1
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 8.8e-22 107.5 57 89.5
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 8.8e-22 107.5 57 89.5
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 9.7e-21 104.0 111 46.8
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 2.8e-20 102.4 96 49.0
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 6.3e-20 101.3 105 48.6
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.4e-19 99.4 115 46.1
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.3e-19 98.2 114 47.4
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.0e-18 96.3 104 50.0
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 3.8e-17 92.0 112 44.6
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 5.0e-17 91.7 81 59.3
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 5.0e-17 91.7 135 43.0
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 1.1e-16 90.5 47 80.9
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.4e-16 90.1 135 43.0
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 1.9e-16 89.7 48 77.1
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 3.2e-16 89.0 96 44.8
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.4e-11 73.6 113 36.3
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 3.1e-11 72.4 58 56.9
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 2.2e-09 66.2 67 52.2
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 8.8e-06 54.3 94 43.6


User provided reference genes

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