Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01444 Brassica carinata HOM05D000160 ORTHO05D095734 6.6e-115 417.5 236 100.0
BcaB08g36646 Brassica carinata HOM05D000160 ORTHO05D000914 7.3e-21 105.1 65 81.5
BcaC04g18648 Brassica carinata HOM05D000160 ORTHO05D000914 2.1e-15 87.0 55 76.4
A10p20830 Brassica napus HOM05D000160 ORTHO05D000914 2.1e-15 87.0 55 76.4
C09p57710 Brassica napus HOM05D000160 ORTHO05D000914 2.1e-15 87.0 55 76.4
BolC9t58642H Brassica oleracea HOM05D000160 ORTHO05D000914 2.1e-15 87.0 55 76.4
BraA10t44148Z Brassica rapa HOM05D000160 ORTHO05D000914 2.1e-15 87.0 55 76.4
Sp6g25630 Schrenkiella parvula HOM05D000160 ORTHO05D000914 3.0e-14 83.2 59 69.5
Thhalv10012639m.g Eutrema salsugineum HOM05D000160 ORTHO05D000914 3.9e-14 82.8 59 69.5
AL6G30080 Arabidopsis lyrata HOM05D000160 ORTHO05D000914 4.3e-13 79.3 59 66.1
BcaC01g01443 Brassica carinata HOM05D000160 ORTHO05D011801 9.5e-13 78.2 64 64.1
Aa31LG11G10910 Aethionema arabicum HOM05D000160 ORTHO05D000914 2.1e-12 77.0 60 63.3
AT5G18750 Arabidopsis thaliana HOM05D000160 ORTHO05D000914 4.7e-12 75.9 49 73.5
Carub.0006s1707 Capsella rubella HOM05D000160 ORTHO05D000914 2.0e-10 70.5 59 61.0
CARHR194240 Cardamine hirsuta HOM05D000160 ORTHO05D000914 2.6e-10 70.1 53 64.2
Hma1.2p1_0078F.1_g040875 Hydrangea macrophylla HOM05D000160 ORTHO05D000914 1.4e-08 64.3 53 56.6
Sc19g0004870 Simmondsia chinensis HOM05D000160 ORTHO05D000914 1.9e-08 63.9 55 50.9
Actinidia40219 Actinidia chinensis HOM05D000160 ORTHO05D000914 2.4e-08 63.5 53 56.6
Dinv38334 Davidia involucrata HOM05D000160 ORTHO05D009988 4.1e-08 62.8 53 52.8
Hma1.2p1_1671F.1_g296750 Hydrangea macrophylla HOM05D000160 ORTHO05D000914 4.1e-08 62.8 53 54.7
Lj6C667T12 Lonicera japonica HOM05D000160 ORTHO05D000914 5.4e-08 62.4 53 56.6
Actinidia23439 Actinidia chinensis HOM05D000160 ORTHO05D000914 9.2e-08 61.6 53 56.6
FvH4_2g06370 Fragaria vesca HOM05D000160 ORTHO05D000914 1.6e-07 60.8 51 56.9
EL10Ac3g06556 Beta vulgaris HOM05D000160 ORTHO05D000914 2.1e-07 60.5 51 54.9
RcHm_v2.0_Chr4g0420721 Rosa chinensis HOM05D000160 ORTHO05D000914 2.1e-07 60.5 53 54.7
Duzib212G0642 Durio zibethinus HOM05D000160 ORTHO05D000914 2.7e-07 60.1 60 48.3
DCAR_027117 Daucus carota HOM05D000160 ORTHO05D000914 3.5e-07 59.7 51 56.9
CSS0005936 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D000914 6.0e-07 58.9 53 49.1
Medtr2g020420 Medicago truncatula HOM05D000160 ORTHO05D000914 7.8e-07 58.5 54 55.6
QL06p006981 Quercus lobata HOM05D000160 ORTHO05D000914 7.8e-07 58.5 53 52.8
Rhsim04G0215400 Rhododendron simsii HOM05D000160 ORTHO05D000914 7.8e-07 58.5 60 50.0
COL.COLO4_13944 Corchorus olitorius HOM05D000160 ORTHO05D000914 1.0e-06 58.2 53 50.9
FAN24G0185 Fragaria x ananassa HOM05D000160 ORTHO05D000914 1.0e-06 58.2 51 54.9
Manes.03G190300 Manihot esculenta HOM05D000160 ORTHO05D000914 1.0e-06 58.2 49 53.1
CSS0015092 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D000914 1.3e-06 57.8 56 51.8
Hund20632 Selenicereus undatus HOM05D000160 ORTHO05D000914 1.3e-06 57.8 53 49.1
Duzib052G0920 Durio zibethinus HOM05D000160 ORTHO05D000914 1.7e-06 57.4 60 48.3
Cc03_g02490 Coffea canephora HOM05D000160 ORTHO05D000914 2.3e-06 57.0 53 50.9
FAN15G2454 Fragaria x ananassa HOM05D000160 ORTHO05D000914 2.3e-06 57.0 51 54.9
FAN27G0892 Fragaria x ananassa HOM05D000160 ORTHO05D000914 2.3e-06 57.0 51 54.9
MD16G1176500 Malus domestica HOM05D000160 ORTHO05D000914 2.3e-06 57.0 53 49.1
PGR004G2342 Punica granatum HOM05D000160 ORTHO05D000914 2.3e-06 57.0 53 50.9
CANSAT78G2024 Cannabis sativa HOM05D000160 ORTHO05D000914 3.0e-06 56.6 53 49.1
CiPaw.01G154700 Carya illinoinensis HOM05D000160 ORTHO05D000914 3.0e-06 56.6 53 49.1
MD13G1174800 Malus domestica HOM05D000160 ORTHO05D000914 3.0e-06 56.6 53 49.1
Nitab4.5_0006501g0040 Nicotiana tabacum HOM05D000160 ORTHO05D000914 3.0e-06 56.6 53 52.8
CANSAT78G1252 Cannabis sativa HOM05D000160 ORTHO05D000914 3.9e-06 56.2 53 45.3
CANSAT78G1266 Cannabis sativa HOM05D000160 ORTHO05D000914 3.9e-06 56.2 53 50.9
Eucgr.H03712 Eucalyptus grandis HOM05D000160 ORTHO05D000914 3.9e-06 56.2 70 44.3
Thecc.04G275600 Theobroma cacao HOM05D000160 ORTHO05D000914 3.9e-06 56.2 53 50.9
Cfa015508 Carpinus fangiana HOM05D000160 ORTHO05D000914 5.1e-06 55.8 53 49.1
Nitab4.5_0001624g0010 Nicotiana tabacum HOM05D000160 ORTHO05D000914 5.1e-06 55.8 53 50.9
Prupe.1G143400 Prunus persica HOM05D000160 ORTHO05D000914 5.1e-06 55.8 53 50.9
Hund20631 Selenicereus undatus HOM05D000160 ORTHO05D000914 5.1e-06 55.8 53 49.1
Peaxi162Scf01067g00026 Petunia axillaris HOM05D000160 ORTHO05D000914 6.6e-06 55.5 49 55.1
CANSAT78G0852 Cannabis sativa HOM05D000160 ORTHO05D000914 8.6e-06 55.1 54 48.1
DCAR_027116 Daucus carota HOM05D000160 ORTHO05D000914 8.6e-06 55.1 49 55.1
Nitab4.5_0000303g0010 Nicotiana tabacum HOM05D000160 ORTHO05D000914 8.6e-06 55.1 53 50.9
Sabra10G0010200 Salix brachista HOM05D000160 ORTHO05D000914 8.6e-06 55.1 53 47.2
Sed0011495 Sechium edule HOM05D000160 ORTHO05D000914 8.6e-06 55.1 54 50.0
GSVIVG01017824001 Vitis vinifera HOM05D000160 ORTHO05D000914 8.6e-06 55.1 51 54.9


User provided reference genes

Program Settings